Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2021-input.r007-tall-162037989800323.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-05, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r007-tall-162037989800323
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 404K
-rw-r--r-- 1 mcc users 16K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 107K May 10 09:42 CTLCardinality.xml
-rw-r--r-- 1 mcc users 9.1K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 89K May 10 09:42 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.0K Apr 26 07:40 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Apr 26 07:40 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K Apr 26 07:40 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 26 07:40 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 23 01:45 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K Mar 23 01:45 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Mar 22 10:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Mar 22 10:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Mar 22 09:09 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 22 09:09 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 3 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 33K May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1620740140156

Running Version 0
[2021-05-11 13:35:41] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-11 13:35:41] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-11 13:35:42] [INFO ] Load time of PNML (sax parser for PT used): 32 ms
[2021-05-11 13:35:42] [INFO ] Transformed 39 places.
[2021-05-11 13:35:42] [INFO ] Transformed 64 transitions.
[2021-05-11 13:35:42] [INFO ] Parsed PT model containing 39 places and 64 transitions in 73 ms.
Parsed 16 properties from file /home/mcc/execution/CTLCardinality.xml in 16 ms.
Support contains 39 out of 39 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 39/39 places, 64/64 transitions.
Applied a total of 0 rules in 7 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 13:35:42] [INFO ] Computed 8 place invariants in 8 ms
[2021-05-11 13:35:42] [INFO ] Implicit Places using invariants in 98 ms returned []
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 13:35:42] [INFO ] Computed 8 place invariants in 2 ms
[2021-05-11 13:35:42] [INFO ] Implicit Places using invariants and state equation in 66 ms returned []
Implicit Place search using SMT with State Equation took 189 ms to find 0 implicit places.
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 13:35:42] [INFO ] Computed 8 place invariants in 2 ms
[2021-05-11 13:35:42] [INFO ] Dead Transitions using invariants and state equation in 65 ms returned []
Finished structural reductions, in 1 iterations. Remains : 39/39 places, 64/64 transitions.
[2021-05-11 13:35:42] [INFO ] Flatten gal took : 27 ms
[2021-05-11 13:35:42] [INFO ] Flatten gal took : 10 ms
[2021-05-11 13:35:42] [INFO ] Input system was already deterministic with 64 transitions.
Incomplete random walk after 100003 steps, including 2 resets, run finished after 504 ms. (steps per millisecond=198 ) properties (out of 73) seen :33
Running SMT prover for 40 properties.
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 13:35:43] [INFO ] Computed 8 place invariants in 6 ms
[2021-05-11 13:35:43] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned sat
[2021-05-11 13:35:43] [INFO ] SMT Verify possible in real domain returnedunsat :17 sat :0 real:23
[2021-05-11 13:35:43] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2021-05-11 13:35:43] [INFO ] SMT Verify possible in nat domain returned unsat :23 sat :17
Successfully simplified 40 atomic propositions for a total of 16 simplifications.
[2021-05-11 13:35:43] [INFO ] Initial state test concluded for 4 properties.
FORMULA Angiogenesis-PT-05-CTLCardinality-04 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-CTLCardinality-05 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-CTLCardinality-06 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-CTLCardinality-13 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 0 place count 39 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 37 transition count 63
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: 5
Deduced a syphon composed of 5 places in 0 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 0 with 10 rules applied. Total rules applied 13 place count 32 transition count 58
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 15 place count 31 transition count 58
Drop transitions removed 2 transitions
Redundant transition composition rules discarded 2 transitions
Iterating global reduction 0 with 2 rules applied. Total rules applied 17 place count 31 transition count 56
Partial Post-agglomeration rule applied 2 times.
Drop transitions removed 2 transitions
Iterating global reduction 0 with 2 rules applied. Total rules applied 19 place count 31 transition count 56
Applied a total of 19 rules in 18 ms. Remains 31 /39 variables (removed 8) and now considering 56/64 (removed 8) transitions.
[2021-05-11 13:35:43] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 5 ms
FORMULA Angiogenesis-PT-05-CTLCardinality-02 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 4 ms
[2021-05-11 13:35:43] [INFO ] Input system was already deterministic with 56 transitions.
Partial Post-agglomeration rule applied 4 times.
Drop transitions removed 4 transitions
Iterating global reduction 0 with 4 rules applied. Total rules applied 4 place count 39 transition count 64
Applied a total of 4 rules in 3 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
[2021-05-11 13:35:43] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 5 ms
FORMULA Angiogenesis-PT-05-CTLCardinality-03 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 4 ms
[2021-05-11 13:35:43] [INFO ] Input system was already deterministic with 64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.1 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Performed 6 Post agglomeration using F-continuation condition.Transition count delta: 6
Deduced a syphon composed of 6 places in 0 ms
Reduce places removed 6 places and 0 transitions.
Iterating global reduction 0 with 12 rules applied. Total rules applied 16 place count 30 transition count 57
Performed 2 Post agglomeration using F-continuation condition.Transition count delta: -3
Deduced a syphon composed of 2 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 4 rules applied. Total rules applied 20 place count 28 transition count 60
Drop transitions removed 7 transitions
Redundant transition composition rules discarded 7 transitions
Iterating global reduction 0 with 7 rules applied. Total rules applied 27 place count 28 transition count 53
Partial Post-agglomeration rule applied 2 times.
Drop transitions removed 2 transitions
Iterating global reduction 0 with 2 rules applied. Total rules applied 29 place count 28 transition count 53
Applied a total of 29 rules in 10 ms. Remains 28 /39 variables (removed 11) and now considering 53/64 (removed 11) transitions.
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 3 ms
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 4 ms
[2021-05-11 13:35:43] [INFO ] Input system was already deterministic with 53 transitions.
Finished random walk after 3904 steps, including 1 resets, run visited all 1 properties in 10 ms. (steps per millisecond=390 )
FORMULA Angiogenesis-PT-05-CTLCardinality-08 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.1 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 3 place count 37 transition count 63
Partial Post-agglomeration rule applied 2 times.
Drop transitions removed 2 transitions
Iterating global reduction 0 with 2 rules applied. Total rules applied 5 place count 37 transition count 63
Applied a total of 5 rules in 5 ms. Remains 37 /39 variables (removed 2) and now considering 63/64 (removed 1) transitions.
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 4 ms
[2021-05-11 13:35:43] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
FORMULA Angiogenesis-PT-05-CTLCardinality-11 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 4 ms
[2021-05-11 13:35:43] [INFO ] Input system was already deterministic with 63 transitions.
[2021-05-11 13:35:43] [INFO ] Initial state reduction rules for CTL removed 5 formulas.
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 5 ms
FORMULA Angiogenesis-PT-05-CTLCardinality-14 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-CTLCardinality-12 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-CTLCardinality-09 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-CTLCardinality-07 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-CTLCardinality-01 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 4 ms
[2021-05-11 13:35:43] [INFO ] Applying decomposition
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 4 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph13663318800220182608.txt, -o, /tmp/graph13663318800220182608.bin, -w, /tmp/graph13663318800220182608.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph13663318800220182608.bin, -l, -1, -v, -w, /tmp/graph13663318800220182608.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 13:35:43] [INFO ] Decomposing Gal with order
[2021-05-11 13:35:43] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 13:35:43] [INFO ] Removed a total of 35 redundant transitions.
[2021-05-11 13:35:43] [INFO ] Flatten gal took : 30 ms
[2021-05-11 13:35:43] [INFO ] Fuse similar labels procedure discarded/fused a total of 16 labels/synchronizations in 5 ms.
[2021-05-11 13:35:43] [INFO ] Time to serialize gal into /tmp/CTLCardinality17440000068140599275.gal : 3 ms
[2021-05-11 13:35:43] [INFO ] Time to serialize properties into /tmp/CTLCardinality5288002202854539128.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality17440000068140599275.gal, -t, CGAL, -ctl, /tmp/CTLCardinality5288002202854539128.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality17440000068140599275.gal -t CGAL -ctl /tmp/CTLCardinality5288002202854539128.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 3 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.27349e+07,6.27554,158612,2,36216,5,802809,6,0,227,781233,0


Converting to forward existential form...Done !
original formula: (!(AF((((((gu3.KdStar+gu0.Akt)+gi1.gu1.KdStarPg)+gu0.GP3)+gi1.gu1.DAG)<=(((gi1.gu1.GStarP3kP3+gi1.gu1.KdStarGStar)+gi1.gu1.KdStarGStarPgStarP2)+gi1.gu1.PtP3P2)))) * EG(EF((EG(((((((((((gu3.AktStar+gi1.gu1.GStarP3kP3)+gi1.gu2.KdStarGStarP3kStarP3)+gi1.gu1.KdStarPg)+gi1.gu1.KdStarGStar)+gi1.gu2.PtP2)+gu0.KdStarGStarP3kStar)+gu0.Akt)+gu3.KdStarGStarP3kStarP3P2)+gu0.GP3)<=((((gu0.KdStarGStarPg+gi1.gu2.PtP3)+gi1.gu1.KdStarPg)+gu0.DAGE)+gu3.KdStarGStarPgStarP3))) + AX(FALSE)))))
=> equivalent forward existential formula: [FwdG((Init * !(!(EG(!((((((gu3.KdStar+gu0.Akt)+gi1.gu1.KdStarPg)+gu0.GP3)+gi1.gu1.DAG)<=(((gi1.gu1.GStarP3kP3+gi1.gu1.KdStarGStar)+gi1.gu1.KdStarGStarPgStarP2)+gi1.gu1.PtP3P2))))))),E(TRUE U (EG(((((((((((gu3.AktStar+gi1.gu1.GStarP3kP3)+gi1.gu2.KdStarGStarP3kStarP3)+gi1.gu1.KdStarPg)+gi1.gu1.KdStarGStar)+gi1.gu2.PtP2)+gu0.KdStarGStarP3kStar)+gu0.Akt)+gu3.KdStarGStarP3kStarP3P2)+gu0.GP3)<=((((gu0.KdStarGStarPg+gi1.gu2.PtP3)+gi1.gu1.KdStarPg)+gu0.DAGE)+gu3.KdStarGStarPgStarP3))) + !(EX(!(FALSE))))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions gi1.gu2.t61, t12, t53, t57, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/55/4/59
(forward)formula 0,1,823.491,10056732,1,0,521,5.62092e+07,26,280,44934,6.07146e+07,194
FORMULA Angiogenesis-PT-05-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EF(((!(EX(((gi1.gu2.GStarPgP3>=50)||((((gu3.KdStarGStarP3kStarP3P2+gu3.KdStar)+gu3.AktP3)<=(((((((gu3.KdStarGStarP3k+gu3.AktP3)+gu3.KdStarGStarPgStarP3)+gu3.KdStarGStarP3kP3)+gu3.Pten)+gu3.AktStar)+gu3.KdStarPgStarP2)+gu3.Pip2))&&((((gu0.Enz+gu3.KdStarGStarP3kP3)+gi1.gu2.KdStarGStarPgStar)+gu0.KdStarGStarP3kStar)<=7))))) * !(AF((((gu3.Pten+gu0.Enz)+gu0.KdStarGStarP3kStarP2)<=(((((gu0.Akt+gu0.GP3)+gi1.gu2.Pg)+gu3.Pip2)+gu0.KdStarG)+gu0.DAGE))))) * (((((gi1.gu2.KdStarGStarP3kStarP3+gi1.gu1.KdStarGStarPgStarP2)+gi1.gu2.KdStarGStarPgStar)+gi1.gu2.Pip3)+gu3.KdStarGStarPgStarP3)>(((((gi1.gu2.PtP3+gi1.gu2.Pg)+gi1.gu2.KdStarGStarP3)+gi1.gu2.PtP2)+gi1.gu1.KdStarGStar)+gi1.gu1.KdStarPg))))
=> equivalent forward existential formula: [FwdG(((FwdU(Init,TRUE) * (((((gi1.gu2.KdStarGStarP3kStarP3+gi1.gu1.KdStarGStarPgStarP2)+gi1.gu2.KdStarGStarPgStar)+gi1.gu2.Pip3)+gu3.KdStarGStarPgStarP3)>(((((gi1.gu2.PtP3+gi1.gu2.Pg)+gi1.gu2.KdStarGStarP3)+gi1.gu2.PtP2)+gi1.gu1.KdStarGStar)+gi1.gu1.KdStarPg))) * !(EX(((gi1.gu2.GStarPgP3>=50)||((((gu3.KdStarGStarP3kStarP3P2+gu3.KdStar)+gu3.AktP3)<=(((((((gu3.KdStarGStarP3k+gu3.AktP3)+gu3.KdStarGStarPgStarP3)+gu3.KdStarGStarP3kP3)+gu3.Pten)+gu3.AktStar)+gu3.KdStarPgStarP2)+gu3.Pip2))&&((((gu0.Enz+gu3.KdStarGStarP3kP3)+gi1.gu2.KdStarGStarPgStar)+gu0.KdStarGStarP3kStar)<=7)))))),!((((gu3.Pten+gu0.Enz)+gu0.KdStarGStarP3kStarP2)<=(((((gu0.Akt+gu0.GP3)+gi1.gu2.Pg)+gu3.Pip2)+gu0.KdStarG)+gu0.DAGE))))] != FALSE
Hit Full ! (commute/partial/dont) 23/0/36
Detected timeout of ITS tools.
[2021-05-11 13:55:43] [INFO ] Flatten gal took : 6 ms
[2021-05-11 13:55:43] [INFO ] Time to serialize gal into /tmp/CTLCardinality8690305232536518673.gal : 1 ms
[2021-05-11 13:55:43] [INFO ] Time to serialize properties into /tmp/CTLCardinality11868864021454847467.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality8690305232536518673.gal, -t, CGAL, -ctl, /tmp/CTLCardinality11868864021454847467.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality8690305232536518673.gal -t CGAL -ctl /tmp/CTLCardinality11868864021454847467.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 2 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.27349e+07,1.1326,37664,2,12182,5,180021,6,0,220,174759,0


Converting to forward existential form...Done !
original formula: EF(((!(EX(((GStarPgP3>=50)||((((KdStarGStarP3kStarP3P2+KdStar)+AktP3)<=(((((((KdStarGStarP3k+AktP3)+KdStarGStarPgStarP3)+KdStarGStarP3kP3)+Pten)+AktStar)+KdStarPgStarP2)+Pip2))&&((((Enz+KdStarGStarP3kP3)+KdStarGStarPgStar)+KdStarGStarP3kStar)<=7))))) * !(AF((((Pten+Enz)+KdStarGStarP3kStarP2)<=(((((Akt+GP3)+Pg)+Pip2)+KdStarG)+DAGE))))) * (((((KdStarGStarP3kStarP3+KdStarGStarPgStarP2)+KdStarGStarPgStar)+Pip3)+KdStarGStarPgStarP3)>(((((PtP3+Pg)+KdStarGStarP3)+PtP2)+KdStarGStar)+KdStarPg))))
=> equivalent forward existential formula: [FwdG(((FwdU(Init,TRUE) * (((((KdStarGStarP3kStarP3+KdStarGStarPgStarP2)+KdStarGStarPgStar)+Pip3)+KdStarGStarPgStarP3)>(((((PtP3+Pg)+KdStarGStarP3)+PtP2)+KdStarGStar)+KdStarPg))) * !(EX(((GStarPgP3>=50)||((((KdStarGStarP3kStarP3P2+KdStar)+AktP3)<=(((((((KdStarGStarP3k+AktP3)+KdStarGStarPgStarP3)+KdStarGStarP3kP3)+Pten)+AktStar)+KdStarPgStarP2)+Pip2))&&((((Enz+KdStarGStarP3kP3)+KdStarGStarPgStar)+KdStarGStarP3kStar)<=7)))))),!((((Pten+Enz)+KdStarGStarP3kStarP2)<=(((((Akt+GP3)+Pg)+Pip2)+KdStarG)+DAGE))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions t12, t51, t57, t61, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
Hit Full ! (commute/partial/dont) 27/0/37
ITS-tools command line returned an error code 139
[2021-05-11 13:58:27] [INFO ] Flatten gal took : 4 ms
[2021-05-11 13:58:27] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 13:58:27] [INFO ] Transformed 39 places.
[2021-05-11 13:58:27] [INFO ] Transformed 64 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2021-05-11 13:58:27] [INFO ] Time to serialize gal into /tmp/CTLCardinality8286380986853663458.gal : 6 ms
[2021-05-11 13:58:27] [INFO ] Time to serialize properties into /tmp/CTLCardinality1334837234012745714.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality8286380986853663458.gal, -t, CGAL, -ctl, /tmp/CTLCardinality1334837234012745714.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality8286380986853663458.gal -t CGAL -ctl /tmp/CTLCardinality1334837234012745714.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 2 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.27349e+07,1.08912,36876,2,6165,5,168541,6,0,220,173304,0


Converting to forward existential form...Done !
original formula: EF(((!(EX(((GStarPgP3>=50)||((((KdStarGStarP3kStarP3P2+KdStar)+AktP3)<=(((((((KdStarGStarP3k+AktP3)+KdStarGStarPgStarP3)+KdStarGStarP3kP3)+Pten)+AktStar)+KdStarPgStarP2)+Pip2))&&((((Enz+KdStarGStarP3kP3)+KdStarGStarPgStar)+KdStarGStarP3kStar)<=7))))) * !(AF((((Pten+Enz)+KdStarGStarP3kStarP2)<=(((((Akt+GP3)+Pg)+Pip2)+KdStarG)+DAGE))))) * (((((KdStarGStarP3kStarP3+KdStarGStarPgStarP2)+KdStarGStarPgStar)+Pip3)+KdStarGStarPgStarP3)>(((((PtP3+Pg)+KdStarGStarP3)+PtP2)+KdStarGStar)+KdStarPg))))
=> equivalent forward existential formula: [FwdG(((FwdU(Init,TRUE) * (((((KdStarGStarP3kStarP3+KdStarGStarPgStarP2)+KdStarGStarPgStar)+Pip3)+KdStarGStarPgStarP3)>(((((PtP3+Pg)+KdStarGStarP3)+PtP2)+KdStarGStar)+KdStarPg))) * !(EX(((GStarPgP3>=50)||((((KdStarGStarP3kStarP3P2+KdStar)+AktP3)<=(((((((KdStarGStarP3k+AktP3)+KdStarGStarPgStarP3)+KdStarGStarP3kP3)+Pten)+AktStar)+KdStarPgStarP2)+Pip2))&&((((Enz+KdStarGStarP3kP3)+KdStarGStarPgStar)+KdStarGStarP3kStar)<=7)))))),!((((Pten+Enz)+KdStarGStarP3kStarP2)<=(((((Akt+GP3)+Pg)+Pip2)+KdStarG)+DAGE))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions t12, t51, t57, t61, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
Hit Full ! (commute/partial/dont) 27/0/37
(forward)formula 0,1,114.504,2184524,1,0,87,8.12455e+06,156,58,12945,1.59109e+07,142
FORMULA Angiogenesis-PT-05-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AX(FALSE)
=> equivalent forward existential formula: [(EY(Init) * !(FALSE))] = FALSE
(forward)formula 1,0,114.505,2184524,1,0,88,8.1246e+06,156,59,12945,1.5911e+07,143
FORMULA Angiogenesis-PT-05-CTLCardinality-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1620741623804

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-05, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r007-tall-162037989800323"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution
cd execution
if [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "UpperBounds" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] || [ "CTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;