About the Execution of ITS-Tools for ViralEpidemic-PT-S02D1C1A10
| Execution Summary | |||||
| Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
| 1036.144 | 102958.00 | 164744.00 | 614.70 | F | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/data/fkordon/mcc2021-input.r280-smll-162123888100143.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2021-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is ViralEpidemic-PT-S02D1C1A10, examination is StableMarking
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r280-smll-162123888100143
=====================================================================
--------------------
preparation of the directory to be used:
/home/mcc/execution
total 9.3M
-rw-r--r-- 1 mcc users 22K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 125K May 10 09:44 CTLCardinality.xml
-rw-r--r-- 1 mcc users 19K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 97K May 10 09:44 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.4K Mar 28 16:47 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Mar 28 16:47 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Mar 28 16:47 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Mar 28 16:47 LTLFireability.xml
-rw-r--r-- 1 mcc users 5.2K Mar 27 14:40 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K Mar 27 14:40 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.4K Mar 26 05:40 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Mar 26 05:40 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K Mar 22 08:16 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K Mar 22 08:16 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:52 equiv_col
-rw-r--r-- 1 mcc users 11 May 5 16:52 instance
-rw-r--r-- 1 mcc users 6 May 5 16:52 iscolored
-rw-r--r-- 1 mcc users 8.8M May 5 16:52 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
FORMULA_NAME StableMarking
=== Now, execution of the tool begins
BK_START 1621380590524
Running Version 0
[2021-05-18 23:29:53] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StableMarking, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2021-05-18 23:29:53] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-18 23:29:54] [INFO ] Load time of PNML (sax parser for PT used): 891 ms
[2021-05-18 23:29:54] [INFO ] Transformed 8189 places.
[2021-05-18 23:29:54] [INFO ] Transformed 10235 transitions.
[2021-05-18 23:29:54] [INFO ] Found NUPN structural information;
[2021-05-18 23:29:54] [INFO ] Parsed PT model containing 8189 places and 10235 transitions in 1052 ms.
Structural test allowed to assert that 4095 places are NOT stable. Took 75 ms.
Incomplete random walk after 10000 steps, including 920 resets, run finished after 4157 ms. (steps per millisecond=2 ) properties (out of 4094) seen :791
Running SMT prover for 3303 properties.
// Phase 1: matrix 10235 rows 8189 cols
[2021-05-18 23:30:02] [INFO ] Invariants computation overflowed in 2768 ms
[2021-05-18 23:30:27] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-18 23:30:27] [WARNING] SMT solver failed with error :SMT solver raised an error when submitting script.... while checking expressions.
Fused 3303 Parikh solutions to 1 different solutions.
Support contains 3303 out of 8189 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 8189/8189 places, 10235/10235 transitions.
Graph (complete) has 4094 edges and 8189 vertex of which 7253 are kept as prefixes of interest. Removing 936 places using SCC suffix rule.26 ms
Discarding 936 places :
Also discarding 299 output transitions
Drop transitions removed 299 transitions
Drop transitions removed 1351 transitions
Reduce isomorphic transitions removed 1351 transitions.
Drop transitions removed 9 transitions
Trivial Post-agglo rules discarded 9 transitions
Performed 9 trivial Post agglomeration. Transition count delta: 9
Iterating post reduction 0 with 1360 rules applied. Total rules applied 1361 place count 7253 transition count 8576
Reduce places removed 9 places and 0 transitions.
Iterating post reduction 1 with 9 rules applied. Total rules applied 1370 place count 7244 transition count 8576
Discarding 963 places :
Symmetric choice reduction at 2 with 963 rule applications. Total rules 2333 place count 6281 transition count 6650
Iterating global reduction 2 with 963 rules applied. Total rules applied 3296 place count 6281 transition count 6650
Performed 502 Post agglomeration using F-continuation condition.Transition count delta: 502
Deduced a syphon composed of 502 places in 2 ms
Reduce places removed 502 places and 0 transitions.
Iterating global reduction 2 with 1004 rules applied. Total rules applied 4300 place count 5779 transition count 6148
Renaming transitions due to excessive name length > 1024 char.
Reduce places removed 1 places and 1 transitions.
Iterating global reduction 2 with 1 rules applied. Total rules applied 4301 place count 5778 transition count 6147
Applied a total of 4301 rules in 2502 ms. Remains 5778 /8189 variables (removed 2411) and now considering 6147/10235 (removed 4088) transitions.
Finished structural reductions, in 1 iterations. Remains : 5778/8189 places, 6147/10235 transitions.
[2021-05-18 23:30:31] [INFO ] Flatten gal took : 640 ms
[2021-05-18 23:30:31] [INFO ] Flatten gal took : 334 ms
[2021-05-18 23:30:31] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality10869184018971522849.gal : 103 ms
[2021-05-18 23:30:31] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality727235253593387418.prop : 14 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality10869184018971522849.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality727235253593387418.prop, --nowitness, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-reach command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality10869184018971522849.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality727235253593387418.prop --nowitness --gen-order FOLLOW
Loading property file /tmp/ReachabilityCardinality727235253593387418.prop.
Detected timeout of ITS tools.
[2021-05-18 23:30:46] [INFO ] Flatten gal took : 277 ms
[2021-05-18 23:30:46] [INFO ] Applying decomposition
[2021-05-18 23:30:47] [INFO ] Flatten gal took : 297 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph15305225703369735502.txt, -o, /tmp/graph15305225703369735502.bin, -w, /tmp/graph15305225703369735502.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph15305225703369735502.bin, -l, -1, -v, -w, /tmp/graph15305225703369735502.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-18 23:30:48] [INFO ] Decomposing Gal with order
[2021-05-18 23:30:49] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-18 23:30:53] [INFO ] Removed a total of 3770 redundant transitions.
[2021-05-18 23:30:53] [INFO ] Flatten gal took : 839 ms
[2021-05-18 23:30:54] [INFO ] Fuse similar labels procedure discarded/fused a total of 1270 labels/synchronizations in 512 ms.
[2021-05-18 23:30:55] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality3819746253967047867.gal : 81 ms
[2021-05-18 23:30:55] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality16283659206945025486.prop : 9 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality3819746253967047867.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality16283659206945025486.prop, --nowitness], workingDir=/home/mcc/execution]
its-reach command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality3819746253967047867.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality16283659206945025486.prop --nowitness
Loading property file /tmp/ReachabilityCardinality16283659206945025486.prop.
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin10876839318934792261
[2021-05-18 23:31:10] [INFO ] Built C files in 150ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin10876839318934792261
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin10876839318934792261]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin10876839318934792261] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin10876839318934792261] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Finished random walk after 129748 steps, including 119 resets, run visited all 3303 properties in 21163 ms. (steps per millisecond=6 )
Able to resolve query StableMarking after proving 4095 properties.
FORMULA StableMarking FALSE TECHNIQUES RANDOM_WALK MARKED_SUFFIX_TEST TOPOLOGICAL
BK_STOP 1621380693482
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StableMarking = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination StableMarking -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="ViralEpidemic-PT-S02D1C1A10"
export BK_EXAMINATION="StableMarking"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is ViralEpidemic-PT-S02D1C1A10, examination is StableMarking"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r280-smll-162123888100143"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/ViralEpidemic-PT-S02D1C1A10.tgz
mv ViralEpidemic-PT-S02D1C1A10 execution
cd execution
if [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "UpperBounds" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] || [ "StableMarking" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StableMarking" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StableMarking" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StableMarking.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StableMarking.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StableMarking.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
elif [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] ; then
echo "FORMULA_NAME StableMarking"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;