About the Execution of ITS-Tools for ViralEpidemic-PT-S03D1C1A08
| Execution Summary | |||||
| Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
| 5783.008 | 3600000.00 | 3748554.00 | 9848.90 | [undef] | Time out reached |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/data/fkordon/mcc2021-input.r273-smll-162123879900266.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2021-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is ViralEpidemic-PT-S03D1C1A08, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r273-smll-162123879900266
=====================================================================
--------------------
preparation of the directory to be used:
/home/mcc/execution
total 57M
-rw-r--r-- 1 mcc users 23K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 130K May 10 09:44 CTLCardinality.xml
-rw-r--r-- 1 mcc users 16K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 96K May 10 09:44 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.8K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.6K Mar 28 16:47 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K Mar 28 16:47 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K Mar 28 16:47 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Mar 28 16:47 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K Mar 27 15:09 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K Mar 27 15:09 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.2K Mar 26 06:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K Mar 26 06:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K Mar 22 08:16 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K Mar 22 08:16 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:52 equiv_col
-rw-r--r-- 1 mcc users 11 May 5 16:52 instance
-rw-r--r-- 1 mcc users 6 May 5 16:52 iscolored
-rw-r--r-- 1 mcc users 57M May 5 16:52 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-00
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-01
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-02
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-03
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-04
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-05
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-06
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-07
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-08
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-09
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-10
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-11
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-12
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-13
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-14
FORMULA_NAME ViralEpidemic-PT-S03D1C1A08-CTLFireability-15
=== Now, execution of the tool begins
BK_START 1621518790358
Running Version 0
[2021-05-20 13:53:13] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-20 13:53:13] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-20 13:53:16] [INFO ] Load time of PNML (sax parser for PT used): 3243 ms
[2021-05-20 13:53:17] [INFO ] Transformed 49206 places.
[2021-05-20 13:53:17] [INFO ] Transformed 68887 transitions.
[2021-05-20 13:53:17] [INFO ] Found NUPN structural information;
[2021-05-20 13:53:17] [INFO ] Parsed PT model containing 49206 places and 68887 transitions in 3735 ms.
Parsed 16 properties from file /home/mcc/execution/CTLFireability.xml in 43 ms.
Support contains 1105 out of 49206 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 49206/49206 places, 68887/68887 transitions.
Applied a total of 0 rules in 335 ms. Remains 49206 /49206 variables (removed 0) and now considering 68887/68887 (removed 0) transitions.
// Phase 1: matrix 68887 rows 49206 cols
[2021-05-20 13:54:46] [INFO ] Invariants computation overflowed in 87955 ms
[2021-05-20 13:54:55] [INFO ] Implicit Places using invariants in 97625 ms returned []
Implicit Place search using SMT only with invariants took 97668 ms to find 0 implicit places.
// Phase 1: matrix 68887 rows 49206 cols
[2021-05-20 13:56:20] [INFO ] Invariants computation overflowed in 84848 ms
[2021-05-20 13:56:29] [INFO ] Dead Transitions using invariants and state equation in 93147 ms returned []
Finished structural reductions, in 1 iterations. Remains : 49206/49206 places, 68887/68887 transitions.
[2021-05-20 13:56:33] [INFO ] Flatten gal took : 3405 ms
[2021-05-20 13:56:35] [INFO ] Flatten gal took : 2403 ms
[2021-05-20 13:56:40] [INFO ] Input system was already deterministic with 68887 transitions.
Interrupted random walk after 62674 steps, including 429 resets, run timeout after 30001 ms. (steps per millisecond=2 ) properties seen :{0=1, 1=1, 2=1, 3=1, 5=1, 6=1, 7=1, 8=1, 9=1, 11=1, 12=1, 13=1, 14=1, 15=1, 16=1, 17=1, 18=1, 19=1, 20=1, 21=1, 22=1, 23=1, 24=1, 25=1, 26=1, 27=1, 28=1, 30=1, 32=1, 33=1, 34=1, 35=1, 36=1, 37=1, 38=1, 39=1, 40=1, 41=1, 42=1, 43=1, 44=1, 45=1, 46=1, 47=1, 48=1, 49=1, 50=1, 51=1, 52=1, 53=1, 54=1, 56=1, 57=1, 58=1, 59=1, 60=1, 61=1, 62=1, 63=1, 64=1, 65=1, 66=1, 67=1, 68=1, 69=1, 70=1, 71=1, 72=1, 73=1, 74=1, 75=1, 76=1, 77=1, 79=1, 81=1, 82=1, 84=1, 86=1, 87=1, 88=1, 89=1, 90=1, 91=1, 93=1, 95=1, 97=1, 98=1, 99=1, 100=1, 101=1, 102=1, 103=1}
Running SMT prover for 12 properties.
// Phase 1: matrix 68887 rows 49206 cols
[2021-05-20 13:58:28] [INFO ] Invariants computation overflowed in 77851 ms
[2021-05-20 13:59:05] [INFO ] SMT Verify possible in real domain returnedunsat :0 sat :0 real:12
[2021-05-20 13:59:50] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-20 14:00:38] [INFO ] [Nat]Absence check using state equation in 47956 ms returned unsat :0 sat :12
Attempting to minimize the solution found.
Minimization took 7498 ms.
[2021-05-20 14:00:46] [INFO ] SMT Verify possible in nat domain returned unsat :0 sat :12
Reduce places removed 1 places and 1 transitions.
Applied a total of 0 rules in 749 ms. Remains 49205 /49206 variables (removed 1) and now considering 68886/68887 (removed 1) transitions.
[2021-05-20 14:00:50] [INFO ] Flatten gal took : 1970 ms
[2021-05-20 14:00:53] [INFO ] Flatten gal took : 2271 ms
[2021-05-20 14:00:56] [INFO ] Input system was already deterministic with 68886 transitions.
[2021-05-20 14:00:59] [INFO ] Flatten gal took : 2299 ms
[2021-05-20 14:01:01] [INFO ] Flatten gal took : 2321 ms
[2021-05-20 14:01:02] [INFO ] Time to serialize gal into /tmp/CTLFireability6178907196783030214.gal : 540 ms
[2021-05-20 14:01:02] [INFO ] Time to serialize properties into /tmp/CTLFireability9004707744603828403.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability6178907196783030214.gal, -t, CGAL, -ctl, /tmp/CTLFireability9004707744603828403.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability6178907196783030214.gal -t CGAL -ctl /tmp/CTLFireability9004707744603828403.ctl --gen-order FOLLOW
Detected timeout of ITS tools.
[2021-05-20 14:01:34] [INFO ] Flatten gal took : 2371 ms
[2021-05-20 14:01:34] [INFO ] Applying decomposition
[2021-05-20 14:01:37] [INFO ] Flatten gal took : 2217 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph13437468812346078984.txt, -o, /tmp/graph13437468812346078984.bin, -w, /tmp/graph13437468812346078984.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph13437468812346078984.bin, -l, -1, -v, -w, /tmp/graph13437468812346078984.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-20 14:01:42] [INFO ] Decomposing Gal with order
[2021-05-20 14:03:27] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-20 14:33:05] [INFO ] Removed a total of 69739 redundant transitions.
[2021-05-20 14:33:07] [INFO ] Flatten gal took : 5142 ms
[2021-05-20 14:33:47] [INFO ] Fuse similar labels procedure discarded/fused a total of 98451 labels/synchronizations in 36583 ms.
[2021-05-20 14:33:47] [INFO ] Time to serialize gal into /tmp/CTLFireability17307274979754506194.gal : 498 ms
[2021-05-20 14:33:47] [INFO ] Time to serialize properties into /tmp/CTLFireability468725824622314814.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability17307274979754506194.gal, -t, CGAL, -ctl, /tmp/CTLFireability468725824622314814.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability17307274979754506194.gal -t CGAL -ctl /tmp/CTLFireability468725824622314814.ctl
Detected timeout of ITS tools.
[2021-05-20 14:34:20] [INFO ] Flatten gal took : 2473 ms
[2021-05-20 14:34:23] [INFO ] Flatten gal took : 2338 ms
[2021-05-20 14:34:24] [INFO ] Applying decomposition
[2021-05-20 14:34:26] [INFO ] Flatten gal took : 2165 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph10602702067072834821.txt, -o, /tmp/graph10602702067072834821.bin, -w, /tmp/graph10602702067072834821.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph10602702067072834821.bin, -l, -1, -v, -w, /tmp/graph10602702067072834821.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-20 14:34:31] [INFO ] Decomposing Gal with order
[2021-05-20 14:35:16] [INFO ] Rewriting arrays to variables to allow decomposition.
BK_TIME_CONFINEMENT_REACHED
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="ViralEpidemic-PT-S03D1C1A08"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is ViralEpidemic-PT-S03D1C1A08, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r273-smll-162123879900266"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/ViralEpidemic-PT-S03D1C1A08.tgz
mv ViralEpidemic-PT-S03D1C1A08 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;