Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2021-input.r197-smll-162089452200303.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2021-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is SafeBus-PT-20, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r197-smll-162089452200303
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 33M
-rw-r--r-- 1 mcc users 456K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 2.3M May 10 09:44 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.3M May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 13M May 10 09:44 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 61K Mar 28 16:34 LTLCardinality.txt
-rw-r--r-- 1 mcc users 203K Mar 28 16:34 LTLCardinality.xml
-rw-r--r-- 1 mcc users 266K Mar 28 16:34 LTLFireability.txt
-rw-r--r-- 1 mcc users 889K Mar 28 16:34 LTLFireability.xml
-rw-r--r-- 1 mcc users 27K Mar 27 11:13 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 88K Mar 27 11:13 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 248K Mar 25 14:30 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 762K Mar 25 14:30 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 14K Mar 22 08:15 UpperBounds.txt
-rw-r--r-- 1 mcc users 33K Mar 22 08:15 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 3 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 11M May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-00
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-01
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-02
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-03
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-04
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-05
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-06
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-07
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-08
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-09
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-10
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-11
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-12
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-13
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-14
FORMULA_NAME SafeBus-PT-20-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1621109936532

Running Version 0
[2021-05-15 20:19:00] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-15 20:19:00] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-15 20:19:01] [INFO ] Load time of PNML (sax parser for PT used): 916 ms
[2021-05-15 20:19:01] [INFO ] Transformed 1026 places.
[2021-05-15 20:19:01] [INFO ] Transformed 10461 transitions.
[2021-05-15 20:19:01] [INFO ] Found NUPN structural information;
[2021-05-15 20:19:01] [INFO ] Parsed PT model containing 1026 places and 10461 transitions in 1124 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 133 ms.
Working with output stream class java.io.PrintStream
Reduce places removed 20 places and 0 transitions.
Incomplete random walk after 10000 steps, including 2 resets, run finished after 799 ms. (steps per millisecond=12 ) properties (out of 16) seen :11
FORMULA SafeBus-PT-20-ReachabilityFireability-15 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-11 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-10 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-07 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-06 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-05 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-04 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-03 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-02 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-01 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA SafeBus-PT-20-ReachabilityFireability-00 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 147 ms. (steps per millisecond=68 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 127 ms. (steps per millisecond=78 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 123 ms. (steps per millisecond=81 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 114 ms. (steps per millisecond=87 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 130 ms. (steps per millisecond=76 ) properties (out of 5) seen :0
Running SMT prover for 5 properties.
[2021-05-15 20:19:03] [INFO ] Flow matrix only has 2482 transitions (discarded 7979 similar events)
// Phase 1: matrix 2482 rows 1006 cols
[2021-05-15 20:19:04] [INFO ] Computed 85 place invariants in 497 ms
[2021-05-15 20:19:05] [INFO ] SMT Verify possible in real domain returnedunsat :0 sat :0 real:5
[2021-05-15 20:19:05] [INFO ] [Nat]Absence check using 44 positive place invariants in 50 ms returned sat
[2021-05-15 20:19:06] [INFO ] [Nat]Absence check using 44 positive and 41 generalized place invariants in 92 ms returned sat
[2021-05-15 20:19:06] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-15 20:19:07] [INFO ] [Nat]Absence check using state equation in 1241 ms returned unsat :4 sat :1
[2021-05-15 20:19:07] [INFO ] State equation strengthened by 421 read => feed constraints.
[2021-05-15 20:19:08] [INFO ] [Nat]Added 421 Read/Feed constraints in 694 ms returned sat
Attempting to minimize the solution found.
Minimization took 137 ms.
[2021-05-15 20:19:10] [INFO ] SMT Verify possible in nat domain returned unsat :4 sat :1
FORMULA SafeBus-PT-20-ReachabilityFireability-14 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA SafeBus-PT-20-ReachabilityFireability-12 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA SafeBus-PT-20-ReachabilityFireability-09 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA SafeBus-PT-20-ReachabilityFireability-08 TRUE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 5 Parikh solutions to 1 different solutions.
This parikh vector is obviously unfeasible : no match in initial state.
Support contains 4 out of 1006 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 1006/1006 places, 10461/10461 transitions.
Free-agglomeration rule (complex) applied 20 times.
Iterating global reduction 0 with 20 rules applied. Total rules applied 20 place count 1006 transition count 10441
Reduce places removed 20 places and 0 transitions.
Iterating post reduction 0 with 20 rules applied. Total rules applied 40 place count 986 transition count 10441
Applied a total of 40 rules in 14281 ms. Remains 986 /1006 variables (removed 20) and now considering 10441/10461 (removed 20) transitions.
Finished structural reductions, in 1 iterations. Remains : 986/1006 places, 10441/10461 transitions.
[2021-05-15 20:19:26] [INFO ] Flatten gal took : 1209 ms
[2021-05-15 20:19:27] [INFO ] Flatten gal took : 818 ms
[2021-05-15 20:19:27] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality3724465532784065742.gal : 247 ms
[2021-05-15 20:19:27] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality8386099876584856737.prop : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality3724465532784065742.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality8386099876584856737.prop, --nowitness, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality3724465532784065742.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality8386099876584856737.prop --nowitness --gen-order FOLLOW
Loading property file /tmp/ReachabilityCardinality8386099876584856737.prop.
Detected timeout of ITS tools.
[2021-05-15 20:19:43] [INFO ] Flatten gal took : 659 ms
[2021-05-15 20:19:43] [INFO ] Applying decomposition
[2021-05-15 20:19:43] [INFO ] Flatten gal took : 781 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph13075098820184932364.txt, -o, /tmp/graph13075098820184932364.bin, -w, /tmp/graph13075098820184932364.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph13075098820184932364.bin, -l, -1, -v, -w, /tmp/graph13075098820184932364.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-15 20:19:46] [INFO ] Decomposing Gal with order
[2021-05-15 20:19:46] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-15 20:19:52] [INFO ] Removed a total of 24917 redundant transitions.
[2021-05-15 20:19:52] [INFO ] Flatten gal took : 5745 ms
[2021-05-15 20:19:54] [INFO ] Fuse similar labels procedure discarded/fused a total of 3063 labels/synchronizations in 865 ms.
[2021-05-15 20:19:54] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality3825460508996941129.gal : 56 ms
[2021-05-15 20:19:54] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality2516766239549971692.prop : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality3825460508996941129.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality2516766239549971692.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality3825460508996941129.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality2516766239549971692.prop --nowitness
Loading property file /tmp/ReachabilityCardinality2516766239549971692.prop.
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin18069628719962721552
[2021-05-15 20:20:09] [INFO ] Built C files in 230ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin18069628719962721552
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin18069628719962721552]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin18069628719962721552] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin18069628719962721552] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Finished random walk after 3297 steps, including 0 resets, run visited all 1 properties in 153 ms. (steps per millisecond=21 )
FORMULA SafeBus-PT-20-ReachabilityFireability-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
All properties solved without resorting to model-checking.

BK_STOP 1621110012358

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityFireability -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SafeBus-PT-20"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is SafeBus-PT-20, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r197-smll-162089452200303"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/SafeBus-PT-20.tgz
mv SafeBus-PT-20 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;