Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2021-input.r197-smll-162089452100232.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2021-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
..................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is SafeBus-COL-10, examination is StateSpace
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r197-smll-162089452100232
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 448K
-rw-r--r-- 1 mcc users 14K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 122K May 10 09:44 CTLCardinality.xml
-rw-r--r-- 1 mcc users 15K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 122K May 10 09:44 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.5K Mar 28 16:34 LTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Mar 28 16:34 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Mar 28 16:34 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Mar 28 16:34 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.3K Mar 27 11:12 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K Mar 27 11:12 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Mar 25 14:24 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Mar 25 14:24 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Mar 22 08:15 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Mar 22 08:15 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 5 16:51 equiv_pt
-rw-r--r-- 1 mcc users 3 May 5 16:51 instance
-rw-r--r-- 1 mcc users 5 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 42K May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

no data necessary for post analysis


=== Now, execution of the tool begins

BK_START 1621031703685

Running Version 0
[2021-05-14 22:35:06] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StateSpace, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-14 22:35:06] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-14 22:35:06] [INFO ] Detected file is not PT type :http://www.pnml.org/version-2009/grammar/symmetricnet
log4j:WARN No appenders could be found for logger (org.apache.axiom.locator.DefaultOMMetaFactoryLocator).
log4j:WARN Please initialize the log4j system properly.
[2021-05-14 22:35:06] [WARNING] Using fallBack plugin, rng conformance not checked
[2021-05-14 22:35:07] [INFO ] Load time of PNML (colored model parsed with PNMLFW) : 1042 ms
[2021-05-14 22:35:07] [INFO ] Detected 1 constant HL places corresponding to 10 PT places.
[2021-05-14 22:35:07] [INFO ] Imported 20 HL places and 14 HL transitions for a total of 326 PT places and 12821.0 transition bindings in 30 ms.
[2021-05-14 22:35:07] [INFO ] Unfolded HLPN to a Petri net with 326 places and 1651 transitions in 58 ms.
[2021-05-14 22:35:07] [INFO ] Unfolded HLPN properties in 0 ms.
Deduced a syphon composed of 10 places in 5 ms
Reduce places removed 20 places and 20 transitions.
Starting structural reductions, iteration 0 : 306/306 places, 1631/1631 transitions.
[2021-05-14 22:35:08] [INFO ] Redundant transitions in 204 ms returned []
[2021-05-14 22:35:08] [INFO ] Flow matrix only has 642 transitions (discarded 989 similar events)
// Phase 1: matrix 642 rows 306 cols
[2021-05-14 22:35:08] [INFO ] Computed 45 place invariants in 58 ms
[2021-05-14 22:35:10] [INFO ] Dead Transitions using invariants and state equation in 1924 ms returned [91, 101, 111, 121, 131, 141, 151, 161, 171, 181, 192, 202, 212, 222, 232, 242, 252, 262, 272, 282, 293, 303, 313, 323, 333, 343, 353, 363, 373, 383, 394, 404, 414, 424, 434, 444, 454, 464, 474, 484, 495, 505, 515, 525, 535, 545, 555, 565, 575, 585, 596, 606, 616, 626, 636, 646, 656, 666, 676, 686, 697, 707, 717, 727, 737, 747, 757, 767, 777, 787, 798, 808, 818, 828, 838, 848, 858, 868, 878, 888, 899, 909, 919, 929, 939, 949, 959, 969, 979, 989, 1000, 1010, 1020, 1030, 1040, 1050, 1060, 1070, 1080, 1090]
Found 100 dead transitions using SMT.
Drop transitions removed 100 transitions
Dead transitions reduction (with SMT) removed 100 transitions :[1090, 1080, 1070, 1060, 1050, 1040, 1030, 1020, 1010, 1000, 989, 979, 969, 959, 949, 939, 929, 919, 909, 899, 888, 878, 868, 858, 848, 838, 828, 818, 808, 798, 787, 777, 767, 757, 747, 737, 727, 717, 707, 697, 686, 676, 666, 656, 646, 636, 626, 616, 606, 596, 585, 575, 565, 555, 545, 535, 525, 515, 505, 495, 484, 474, 464, 454, 444, 434, 424, 414, 404, 394, 383, 373, 363, 353, 343, 333, 323, 313, 303, 293, 282, 272, 262, 252, 242, 232, 222, 212, 202, 192, 181, 171, 161, 151, 141, 131, 121, 111, 101, 91]
Starting structural reductions, iteration 1 : 306/306 places, 1531/1631 transitions.
[2021-05-14 22:35:10] [INFO ] Redundant transitions in 73 ms returned []
[2021-05-14 22:35:10] [INFO ] Flow matrix only has 642 transitions (discarded 889 similar events)
// Phase 1: matrix 642 rows 306 cols
[2021-05-14 22:35:10] [INFO ] Computed 45 place invariants in 55 ms
[2021-05-14 22:35:11] [INFO ] Dead Transitions using invariants and state equation in 1278 ms returned []
Finished structural reductions, in 2 iterations. Remains : 306/306 places, 1531/1631 transitions.
Final net has 306 places and 1531 transitions.
[2021-05-14 22:35:12] [INFO ] Flatten gal took : 427 ms
[2021-05-14 22:35:12] [INFO ] Applying decomposition
[2021-05-14 22:35:12] [INFO ] Flatten gal took : 253 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph3018782145726712576.txt, -o, /tmp/graph3018782145726712576.bin, -w, /tmp/graph3018782145726712576.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph3018782145726712576.bin, -l, -1, -v, -w, /tmp/graph3018782145726712576.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-14 22:35:13] [INFO ] Decomposing Gal with order
[2021-05-14 22:35:13] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-14 22:35:14] [INFO ] Removed a total of 3281 redundant transitions.
[2021-05-14 22:35:14] [INFO ] Flatten gal took : 794 ms
[2021-05-14 22:35:14] [INFO ] Fuse similar labels procedure discarded/fused a total of 667 labels/synchronizations in 91 ms.
[2021-05-14 22:35:14] [INFO ] Time to serialize gal into /tmp/StateSpace1012874060695984759.gal : 21 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/StateSpace1012874060695984759.gal, -t, CGAL, --stats], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/StateSpace1012874060695984759.gal -t CGAL --stats
Detected timeout of ITS tools.
[2021-05-14 22:55:18] [INFO ] Applying decomposition
[2021-05-14 22:55:19] [INFO ] Flatten gal took : 544 ms
[2021-05-14 22:55:19] [INFO ] Decomposing Gal with order
[2021-05-14 22:55:19] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-14 22:55:21] [INFO ] Removed a total of 6671 redundant transitions.
[2021-05-14 22:55:21] [INFO ] Flatten gal took : 1066 ms
[2021-05-14 22:55:21] [INFO ] Fuse similar labels procedure discarded/fused a total of 80 labels/synchronizations in 87 ms.
[2021-05-14 22:55:21] [INFO ] Time to serialize gal into /tmp/StateSpace954327602224298687.gal : 178 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/StateSpace954327602224298687.gal, -t, CGAL, --stats], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/StateSpace954327602224298687.gal -t CGAL --stats
Detected timeout of ITS tools.
[2021-05-14 23:15:26] [INFO ] Flatten gal took : 1513 ms
[2021-05-14 23:15:28] [INFO ] Input system was already deterministic with 1531 transitions.
[2021-05-14 23:15:28] [INFO ] Transformed 306 places.
[2021-05-14 23:15:28] [INFO ] Transformed 1531 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
P-invariant computation with GreatSPN timed out. Skipping.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2021-05-14 23:15:59] [INFO ] Time to serialize gal into /tmp/StateSpace6571366232872998058.gal : 56 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/StateSpace6571366232872998058.gal, -t, CGAL, --stats, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/StateSpace6571366232872998058.gal -t CGAL --stats --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StateSpace = StateSpace ]]
+ [[ -f modelMain.xml ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution StateSpace -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination StateSpace -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SafeBus-COL-10"
export BK_EXAMINATION="StateSpace"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is SafeBus-COL-10, examination is StateSpace"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r197-smll-162089452100232"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/SafeBus-COL-10.tgz
mv SafeBus-COL-10 execution
cd execution
if [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "UpperBounds" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] || [ "StateSpace" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StateSpace" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StateSpace" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StateSpace.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StateSpace.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StateSpace.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StateSpace.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] ; then
echo "FORMULA_NAME StateSpace"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;