Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2021-input.r178-tajo-162089415300121.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is RERS17pb113-PT-1, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r178-tajo-162089415300121
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 15M
-rw-r--r-- 1 mcc users 16K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 151K May 10 09:43 CTLCardinality.xml
-rw-r--r-- 1 mcc users 17K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 84K May 10 09:43 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.4K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.3K Mar 28 16:28 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Mar 28 16:28 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Mar 28 16:28 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Mar 28 16:28 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.6K Mar 27 10:02 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Mar 27 10:02 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.0K Mar 25 13:10 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K Mar 25 13:10 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Mar 22 08:13 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Mar 22 08:13 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 2 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 15M May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-00
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-01
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-02
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-03
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-04
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-05
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-06
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-07
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-08
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-09
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-10
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-11
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-12
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-13
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-14
FORMULA_NAME RERS17pb113-PT-1-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1621237360846

Running Version 0
[2021-05-17 07:42:42] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-17 07:42:42] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-17 07:42:43] [INFO ] Load time of PNML (sax parser for PT used): 596 ms
[2021-05-17 07:42:43] [INFO ] Transformed 639 places.
[2021-05-17 07:42:43] [INFO ] Transformed 31353 transitions.
[2021-05-17 07:42:43] [INFO ] Found NUPN structural information;
[2021-05-17 07:42:43] [INFO ] Parsed PT model containing 639 places and 31353 transitions in 765 ms.
Parsed 16 properties from file /home/mcc/execution/CTLCardinality.xml in 18 ms.
FORMULA RERS17pb113-PT-1-CTLCardinality-03 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Support contains 511 out of 639 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 639/639 places, 31353/31353 transitions.
Ensure Unique test removed 1 places
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 638 transition count 31353
Applied a total of 1 rules in 134 ms. Remains 638 /639 variables (removed 1) and now considering 31353/31353 (removed 0) transitions.
[2021-05-17 07:42:43] [INFO ] Flow matrix only has 18326 transitions (discarded 13027 similar events)
// Phase 1: matrix 18326 rows 638 cols
[2021-05-17 07:42:43] [INFO ] Computed 24 place invariants in 106 ms
[2021-05-17 07:42:44] [INFO ] Implicit Places using invariants in 780 ms returned []
Implicit Place search using SMT only with invariants took 802 ms to find 0 implicit places.
[2021-05-17 07:42:44] [INFO ] Flow matrix only has 18326 transitions (discarded 13027 similar events)
// Phase 1: matrix 18326 rows 638 cols
[2021-05-17 07:42:44] [INFO ] Computed 24 place invariants in 94 ms
[2021-05-17 07:42:55] [INFO ] Dead Transitions using invariants and state equation in 10678 ms returned []
Finished structural reductions, in 1 iterations. Remains : 638/639 places, 31353/31353 transitions.
[2021-05-17 07:42:56] [INFO ] Flatten gal took : 1054 ms
[2021-05-17 07:42:57] [INFO ] Flatten gal took : 835 ms
[2021-05-17 07:42:59] [INFO ] Input system was already deterministic with 31353 transitions.
Incomplete random walk after 100000 steps, including 16 resets, run finished after 5029 ms. (steps per millisecond=19 ) properties (out of 103) seen :29
Running SMT prover for 74 properties.
[2021-05-17 07:43:04] [INFO ] Flow matrix only has 18326 transitions (discarded 13027 similar events)
// Phase 1: matrix 18326 rows 638 cols
[2021-05-17 07:43:04] [INFO ] Computed 24 place invariants in 93 ms
[2021-05-17 07:43:05] [INFO ] [Real]Absence check using 13 positive place invariants in 7 ms returned sat
[2021-05-17 07:43:05] [INFO ] [Real]Absence check using 13 positive and 11 generalized place invariants in 2 ms returned sat
[2021-05-17 07:43:05] [INFO ] SMT Verify possible in real domain returnedunsat :66 sat :0 real:8
[2021-05-17 07:43:05] [INFO ] [Nat]Absence check using 13 positive place invariants in 7 ms returned sat
[2021-05-17 07:43:05] [INFO ] [Nat]Absence check using 13 positive and 11 generalized place invariants in 2 ms returned sat
[2021-05-17 07:43:05] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-17 07:43:16] [INFO ] [Nat]Absence check using state equation in 11555 ms returned unsat :6 sat :68
[2021-05-17 07:43:17] [INFO ] State equation strengthened by 829 read => feed constraints.
[2021-05-17 07:43:19] [INFO ] [Nat]Added 829 Read/Feed constraints in 2449 ms returned sat
Attempting to minimize the solution found.
Minimization took 546 ms.
[2021-05-17 07:43:32] [INFO ] SMT Verify possible in nat domain returned unsat :6 sat :67
Successfully simplified 72 atomic propositions for a total of 15 simplifications.
[2021-05-17 07:43:32] [INFO ] Initial state test concluded for 2 properties.
FORMULA RERS17pb113-PT-1-CTLCardinality-09 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA RERS17pb113-PT-1-CTLCardinality-14 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Ensure Unique test removed 11 places
Reduce places removed 1 places and 1 transitions.
Iterating global reduction 0 with 1 rules applied. Total rules applied 1 place count 626 transition count 31352
Applied a total of 1 rules in 479 ms. Remains 626 /638 variables (removed 12) and now considering 31352/31353 (removed 1) transitions.
[2021-05-17 07:43:34] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
[2021-05-17 07:43:34] [INFO ] Flatten gal took : 906 ms
FORMULA RERS17pb113-PT-1-CTLCardinality-06 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-17 07:43:35] [INFO ] Flatten gal took : 1119 ms
[2021-05-17 07:43:38] [INFO ] Input system was already deterministic with 31352 transitions.
[2021-05-17 07:43:38] [INFO ] Initial state reduction rules for CTL removed 3 formulas.
[2021-05-17 07:43:39] [INFO ] Flatten gal took : 650 ms
[2021-05-17 07:43:39] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
FORMULA RERS17pb113-PT-1-CTLCardinality-13 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA RERS17pb113-PT-1-CTLCardinality-12 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA RERS17pb113-PT-1-CTLCardinality-08 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA RERS17pb113-PT-1-CTLCardinality-04 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-17 07:43:39] [INFO ] Flatten gal took : 687 ms
[2021-05-17 07:43:40] [INFO ] Applying decomposition
[2021-05-17 07:43:41] [INFO ] Flatten gal took : 875 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph4753887867183724240.txt, -o, /tmp/graph4753887867183724240.bin, -w, /tmp/graph4753887867183724240.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph4753887867183724240.bin, -l, -1, -v, -w, /tmp/graph4753887867183724240.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-17 07:43:43] [INFO ] Decomposing Gal with order
[2021-05-17 07:43:43] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-17 07:43:47] [INFO ] Removed a total of 91088 redundant transitions.
[2021-05-17 07:43:47] [INFO ] Flatten gal took : 2842 ms
[2021-05-17 07:43:50] [INFO ] Fuse similar labels procedure discarded/fused a total of 1943 labels/synchronizations in 1698 ms.
[2021-05-17 07:43:51] [INFO ] Time to serialize gal into /tmp/CTLCardinality6182549696786452907.gal : 132 ms
[2021-05-17 07:43:51] [INFO ] Time to serialize properties into /tmp/CTLCardinality5040274514368590727.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality6182549696786452907.gal, -t, CGAL, -ctl, /tmp/CTLCardinality5040274514368590727.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality6182549696786452907.gal -t CGAL -ctl /tmp/CTLCardinality5040274514368590727.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 8 CTL formulae.
ITS-tools command line returned an error code 137
[2021-05-17 07:59:44] [INFO ] Applying decomposition
[2021-05-17 07:59:47] [INFO ] Flatten gal took : 3282 ms
[2021-05-17 07:59:48] [INFO ] Decomposing Gal with order
[2021-05-17 07:59:48] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-17 08:00:02] [INFO ] Removed a total of 59926 redundant transitions.
[2021-05-17 08:00:02] [INFO ] Flatten gal took : 11923 ms
[2021-05-17 08:00:04] [INFO ] Fuse similar labels procedure discarded/fused a total of 2721 labels/synchronizations in 1531 ms.
[2021-05-17 08:00:04] [INFO ] Time to serialize gal into /tmp/CTLCardinality10470603789660565898.gal : 11 ms
[2021-05-17 08:00:04] [INFO ] Time to serialize properties into /tmp/CTLCardinality17233897998418736838.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality10470603789660565898.gal, -t, CGAL, -ctl, /tmp/CTLCardinality17233897998418736838.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality10470603789660565898.gal -t CGAL -ctl /tmp/CTLCardinality17233897998418736838.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 8 CTL formulae.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
ITS-tools command line returned an error code 134
[2021-05-17 08:11:43] [INFO ] Flatten gal took : 2278 ms
[2021-05-17 08:11:46] [INFO ] Input system was already deterministic with 31353 transitions.
[2021-05-17 08:11:46] [INFO ] Transformed 638 places.
[2021-05-17 08:11:47] [INFO ] Transformed 31353 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2021-05-17 08:11:50] [INFO ] Time to serialize gal into /tmp/CTLCardinality14468123214462560911.gal : 130 ms
[2021-05-17 08:11:50] [INFO ] Time to serialize properties into /tmp/CTLCardinality5036143247973457481.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality14468123214462560911.gal, -t, CGAL, -ctl, /tmp/CTLCardinality5036143247973457481.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality14468123214462560911.gal -t CGAL -ctl /tmp/CTLCardinality5036143247973457481.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 8 CTL formulae.
ITS-tools command line returned an error code 137

BK_STOP 1621239837257

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="RERS17pb113-PT-1"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is RERS17pb113-PT-1, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r178-tajo-162089415300121"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/RERS17pb113-PT-1.tgz
mv RERS17pb113-PT-1 execution
cd execution
if [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "UpperBounds" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] || [ "CTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;