About the Execution of ITS-Tools for CircadianClock-PT-010000
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/data/fko/mcc2021-input.r045-oct2-162038291300035.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fko/mcc2021-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is CircadianClock-PT-010000, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r045-oct2-162038291300035
=====================================================================
--------------------
preparation of the directory to be used:
/home/mcc/execution
total 380K
-rw-r--r-- 1 mcc users 15K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 153K May 5 16:58 CTLCardinality.xml
-rw-r--r-- 1 mcc users 7.4K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 52K May 5 16:58 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.4K Mar 28 15:49 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Mar 28 15:49 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Mar 28 15:49 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Mar 28 15:49 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K Mar 23 03:04 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K Mar 23 03:04 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.5K Mar 22 12:30 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 21K Mar 22 12:30 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Mar 22 09:10 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 22 09:10 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 7 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 11K May 5 16:51 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of positive values
NUM_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-00
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-01
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-02
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-03
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-04
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-05
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-06
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-07
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-08
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-09
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-10
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-11
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-12
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-13
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-14
FORMULA_NAME CircadianClock-PT-010000-UpperBounds-15
=== Now, execution of the tool begins
BK_START 1620558645463
Running Version 0
[2021-05-09 11:10:47] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-09 11:10:47] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-09 11:10:47] [INFO ] Load time of PNML (sax parser for PT used): 22 ms
[2021-05-09 11:10:47] [INFO ] Transformed 14 places.
[2021-05-09 11:10:47] [INFO ] Transformed 16 transitions.
[2021-05-09 11:10:47] [INFO ] Parsed PT model containing 14 places and 16 transitions in 65 ms.
Parsed 16 properties from file /home/mcc/execution/UpperBounds.xml in 9 ms.
Normalized transition count is 14 out of 16 initially.
// Phase 1: matrix 14 rows 14 cols
[2021-05-09 11:10:48] [INFO ] Computed 7 place invariants in 41 ms
FORMULA CircadianClock-PT-010000-UpperBounds-14 1 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-10 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-09 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-07 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-06 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-05 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-04 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-02 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA CircadianClock-PT-010000-UpperBounds-00 10000 TECHNIQUES TOPOLOGICAL INITIAL_STATE
Incomplete random walk after 10001 steps, including 0 resets, run finished after 8 ms. (steps per millisecond=1250 ) properties (out of 7) seen :1
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=909 ) properties (out of 7) seen :1243
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 37 ms. (steps per millisecond=270 ) properties (out of 7) seen :1668
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 7 ms. (steps per millisecond=1428 ) properties (out of 7) seen :1669
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 5 ms. (steps per millisecond=2000 ) properties (out of 7) seen :836
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 6 ms. (steps per millisecond=1666 ) properties (out of 7) seen :79
FORMULA CircadianClock-PT-010000-UpperBounds-12 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 5 ms. (steps per millisecond=2000 ) properties (out of 6) seen :667
[2021-05-09 11:10:48] [INFO ] Flow matrix only has 14 transitions (discarded 2 similar events)
// Phase 1: matrix 14 rows 14 cols
[2021-05-09 11:10:48] [INFO ] Computed 7 place invariants in 1 ms
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using 7 positive place invariants in 5 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using state equation in 12 ms returned sat
[2021-05-09 11:10:48] [INFO ] State equation strengthened by 4 read => feed constraints.
[2021-05-09 11:10:48] [INFO ] [Real]Added 4 Read/Feed constraints in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] Solution in real domain found non-integer solution.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using state equation in 26 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Added 4 Read/Feed constraints in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] Computed and/alt/rep : 12/23/12 causal constraints (skipped 0 transitions) in 1 ms.
[2021-05-09 11:10:48] [INFO ] Added : 8 causal constraints over 2 iterations in 48 ms. Result :sat
Minimization took 4 ms.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using 7 positive place invariants in 3 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using state equation in 4 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Added 4 Read/Feed constraints in 3 ms returned sat
[2021-05-09 11:10:48] [INFO ] Solution in real domain found non-integer solution.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using state equation in 5 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Added 4 Read/Feed constraints in 0 ms returned sat
[2021-05-09 11:10:48] [INFO ] Computed and/alt/rep : 12/23/12 causal constraints (skipped 0 transitions) in 2 ms.
[2021-05-09 11:10:48] [INFO ] Added : 8 causal constraints over 2 iterations in 7 ms. Result :sat
Minimization took 3 ms.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using state equation in 4 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Added 4 Read/Feed constraints in 2 ms returned sat
[2021-05-09 11:10:48] [INFO ] Solution in real domain found non-integer solution.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using 7 positive place invariants in 5 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using state equation in 8 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Added 4 Read/Feed constraints in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] Computed and/alt/rep : 12/23/12 causal constraints (skipped 0 transitions) in 1 ms.
[2021-05-09 11:10:48] [INFO ] Added : 8 causal constraints over 2 iterations in 16 ms. Result :sat
Minimization took 3 ms.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using 7 positive place invariants in 3 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using state equation in 50 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Added 4 Read/Feed constraints in 0 ms returned sat
[2021-05-09 11:10:48] [INFO ] Solution in real domain found non-integer solution.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using 7 positive place invariants in 28 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using state equation in 26 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Added 4 Read/Feed constraints in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] Computed and/alt/rep : 12/23/12 causal constraints (skipped 0 transitions) in 27 ms.
[2021-05-09 11:10:48] [INFO ] Added : 10 causal constraints over 2 iterations in 36 ms. Result :sat
Minimization took 5 ms.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using 7 positive place invariants in 4 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using state equation in 7 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Added 4 Read/Feed constraints in 0 ms returned sat
[2021-05-09 11:10:48] [INFO ] Solution in real domain found non-integer solution.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using state equation in 4 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Added 4 Read/Feed constraints in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] Computed and/alt/rep : 12/23/12 causal constraints (skipped 0 transitions) in 1 ms.
[2021-05-09 11:10:48] [INFO ] Added : 10 causal constraints over 2 iterations in 7 ms. Result :sat
Minimization took 3 ms.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Real]Absence check using state equation in 3 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Real]Added 4 Read/Feed constraints in 0 ms returned sat
[2021-05-09 11:10:48] [INFO ] Solution in real domain found non-integer solution.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-09 11:10:48] [INFO ] [Nat]Absence check using state equation in 4 ms returned sat
[2021-05-09 11:10:48] [INFO ] [Nat]Added 4 Read/Feed constraints in 3 ms returned sat
[2021-05-09 11:10:48] [INFO ] Computed and/alt/rep : 12/23/12 causal constraints (skipped 0 transitions) in 12 ms.
[2021-05-09 11:10:48] [INFO ] Added : 10 causal constraints over 2 iterations in 21 ms. Result :sat
Minimization took 6 ms.
Current structural bounds on expressions (after SMT) : [10000, 10000, 10000, 10000, 10000, 10000] Max seen :[556, 556, 556, 416, 416, 667]
Incomplete Parikh walk after 1001000 steps, including 97 resets, run finished after 741 ms. (steps per millisecond=1350 ) properties (out of 6) seen :11739 could not realise parikh vector
FORMULA CircadianClock-PT-010000-UpperBounds-15 10000 TECHNIQUES TOPOLOGICAL PARIKH_WALK
Incomplete Parikh walk after 1000600 steps, including 248 resets, run finished after 575 ms. (steps per millisecond=1740 ) properties (out of 5) seen :20003 could not realise parikh vector
FORMULA CircadianClock-PT-010000-UpperBounds-13 10000 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA CircadianClock-PT-010000-UpperBounds-11 10000 TECHNIQUES TOPOLOGICAL PARIKH_WALK
Incomplete Parikh walk after 1000600 steps, including 232 resets, run finished after 432 ms. (steps per millisecond=2316 ) properties (out of 3) seen :0 could not realise parikh vector
Incomplete Parikh walk after 1001200 steps, including 172 resets, run finished after 434 ms. (steps per millisecond=2306 ) properties (out of 3) seen :30000 could not realise parikh vector
FORMULA CircadianClock-PT-010000-UpperBounds-08 10000 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA CircadianClock-PT-010000-UpperBounds-03 10000 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA CircadianClock-PT-010000-UpperBounds-01 10000 TECHNIQUES TOPOLOGICAL PARIKH_WALK
All properties solved without resorting to model-checking.
BK_STOP 1620558651353
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="CircadianClock-PT-010000"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is CircadianClock-PT-010000, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r045-oct2-162038291300035"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/CircadianClock-PT-010000.tgz
mv CircadianClock-PT-010000 execution
cd execution
if [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "UpperBounds" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] || [ "UpperBounds" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
elif [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] ; then
echo "FORMULA_NAME UpperBounds"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;