Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2021-input.r007-tall-162037989900347.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
..................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-20, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r007-tall-162037989900347
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 388K
-rw-r--r-- 1 mcc users 17K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 112K May 10 09:42 CTLCardinality.xml
-rw-r--r-- 1 mcc users 8.2K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 79K May 10 09:42 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.7K Apr 26 07:40 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Apr 26 07:40 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K Apr 26 07:40 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 26 07:40 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K Mar 23 01:45 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K Mar 23 01:45 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Mar 22 10:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K Mar 22 10:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Mar 22 09:09 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 22 09:09 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 3 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 33K May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1620744075082

Running Version 0
[2021-05-11 14:41:16] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-11 14:41:16] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-11 14:41:16] [INFO ] Load time of PNML (sax parser for PT used): 33 ms
[2021-05-11 14:41:16] [INFO ] Transformed 39 places.
[2021-05-11 14:41:17] [INFO ] Transformed 64 transitions.
[2021-05-11 14:41:17] [INFO ] Parsed PT model containing 39 places and 64 transitions in 71 ms.
Parsed 16 properties from file /home/mcc/execution/CTLCardinality.xml in 17 ms.
Support contains 39 out of 39 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 39/39 places, 64/64 transitions.
Applied a total of 0 rules in 7 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 14:41:17] [INFO ] Computed 8 place invariants in 10 ms
[2021-05-11 14:41:17] [INFO ] Implicit Places using invariants in 88 ms returned []
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 14:41:17] [INFO ] Computed 8 place invariants in 3 ms
[2021-05-11 14:41:17] [INFO ] Implicit Places using invariants and state equation in 56 ms returned []
Implicit Place search using SMT with State Equation took 170 ms to find 0 implicit places.
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 14:41:17] [INFO ] Computed 8 place invariants in 9 ms
[2021-05-11 14:41:17] [INFO ] Dead Transitions using invariants and state equation in 73 ms returned []
Finished structural reductions, in 1 iterations. Remains : 39/39 places, 64/64 transitions.
[2021-05-11 14:41:17] [INFO ] Flatten gal took : 26 ms
[2021-05-11 14:41:17] [INFO ] Flatten gal took : 11 ms
[2021-05-11 14:41:17] [INFO ] Input system was already deterministic with 64 transitions.
Incomplete random walk after 100017 steps, including 2 resets, run finished after 147 ms. (steps per millisecond=680 ) properties (out of 74) seen :56
Running SMT prover for 18 properties.
// Phase 1: matrix 64 rows 39 cols
[2021-05-11 14:41:17] [INFO ] Computed 8 place invariants in 4 ms
[2021-05-11 14:41:17] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned unsat
[2021-05-11 14:41:17] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned unsat
[2021-05-11 14:41:17] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:17] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:17] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned sat
[2021-05-11 14:41:17] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-11 14:41:17] [INFO ] [Real]Absence check using state equation in 17 ms returned sat
[2021-05-11 14:41:17] [INFO ] Solution in real domain found non-integer solution.
[2021-05-11 14:41:17] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2021-05-11 14:41:17] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-11 14:41:17] [INFO ] [Nat]Absence check using state equation in 14 ms returned sat
[2021-05-11 14:41:17] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 9 ms.
[2021-05-11 14:41:18] [INFO ] Added : 55 causal constraints over 11 iterations in 102 ms. Result :sat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 3 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
[2021-05-11 14:41:18] [INFO ] [Real]Absence check using 8 positive place invariants in 1 ms returned unsat
Successfully simplified 17 atomic propositions for a total of 16 simplifications.
Performed 4 Post agglomeration using F-continuation condition.Transition count delta: 4
Deduced a syphon composed of 4 places in 0 ms
Reduce places removed 4 places and 0 transitions.
Iterating global reduction 0 with 8 rules applied. Total rules applied 8 place count 35 transition count 60
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: -3
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 10 place count 34 transition count 63
Drop transitions removed 7 transitions
Redundant transition composition rules discarded 7 transitions
Iterating global reduction 0 with 7 rules applied. Total rules applied 17 place count 34 transition count 56
Partial Post-agglomeration rule applied 3 times.
Drop transitions removed 3 transitions
Iterating global reduction 0 with 3 rules applied. Total rules applied 20 place count 34 transition count 56
Applied a total of 20 rules in 19 ms. Remains 34 /39 variables (removed 5) and now considering 56/64 (removed 8) transitions.
[2021-05-11 14:41:18] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:41:18] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:41:18] [INFO ] Input system was already deterministic with 56 transitions.
Finished random walk after 211 steps, including 0 resets, run visited all 1 properties in 1 ms. (steps per millisecond=211 )
FORMULA Angiogenesis-PT-20-CTLCardinality-02 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.1 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 3 place count 37 transition count 63
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 5 place count 36 transition count 63
Partial Post-agglomeration rule applied 4 times.
Drop transitions removed 4 transitions
Iterating global reduction 0 with 4 rules applied. Total rules applied 9 place count 36 transition count 63
Applied a total of 9 rules in 8 ms. Remains 36 /39 variables (removed 3) and now considering 63/64 (removed 1) transitions.
[2021-05-11 14:41:18] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:41:18] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:41:18] [INFO ] Input system was already deterministic with 63 transitions.
[2021-05-11 14:41:18] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:41:18] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:41:18] [INFO ] Time to serialize gal into /tmp/CTLCardinality15282644914250193208.gal : 1 ms
[2021-05-11 14:41:18] [INFO ] Time to serialize properties into /tmp/CTLCardinality8856956744950230470.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality15282644914250193208.gal, -t, CGAL, -ctl, /tmp/CTLCardinality8856956744950230470.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality15282644914250193208.gal -t CGAL -ctl /tmp/CTLCardinality8856956744950230470.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:41:48] [INFO ] Flatten gal took : 24 ms
[2021-05-11 14:41:48] [INFO ] Applying decomposition
[2021-05-11 14:41:48] [INFO ] Flatten gal took : 12 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph15515711016116001345.txt, -o, /tmp/graph15515711016116001345.bin, -w, /tmp/graph15515711016116001345.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph15515711016116001345.bin, -l, -1, -v, -w, /tmp/graph15515711016116001345.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:41:48] [INFO ] Decomposing Gal with order
[2021-05-11 14:41:48] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:41:48] [INFO ] Removed a total of 37 redundant transitions.
[2021-05-11 14:41:48] [INFO ] Flatten gal took : 29 ms
[2021-05-11 14:41:48] [INFO ] Fuse similar labels procedure discarded/fused a total of 20 labels/synchronizations in 7 ms.
[2021-05-11 14:41:48] [INFO ] Time to serialize gal into /tmp/CTLCardinality13572480269422943984.gal : 2 ms
[2021-05-11 14:41:48] [INFO ] Time to serialize properties into /tmp/CTLCardinality3713060661666043530.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality13572480269422943984.gal, -t, CGAL, -ctl, /tmp/CTLCardinality3713060661666043530.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality13572480269422943984.gal -t CGAL -ctl /tmp/CTLCardinality3713060661666043530.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: 5
Deduced a syphon composed of 5 places in 0 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 0 with 10 rules applied. Total rules applied 14 place count 31 transition count 58
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 16 place count 30 transition count 58
Drop transitions removed 2 transitions
Redundant transition composition rules discarded 2 transitions
Iterating global reduction 0 with 2 rules applied. Total rules applied 18 place count 30 transition count 56
Partial Post-agglomeration rule applied 4 times.
Drop transitions removed 4 transitions
Iterating global reduction 0 with 4 rules applied. Total rules applied 22 place count 30 transition count 56
Applied a total of 22 rules in 8 ms. Remains 30 /39 variables (removed 9) and now considering 56/64 (removed 8) transitions.
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:42:18] [INFO ] Input system was already deterministic with 56 transitions.
Finished random walk after 22 steps, including 0 resets, run visited all 1 properties in 1 ms. (steps per millisecond=22 )
FORMULA Angiogenesis-PT-20-CTLCardinality-07 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 2 place count 38 transition count 64
Partial Post-agglomeration rule applied 4 times.
Drop transitions removed 4 transitions
Iterating global reduction 0 with 4 rules applied. Total rules applied 6 place count 38 transition count 64
Applied a total of 6 rules in 5 ms. Remains 38 /39 variables (removed 1) and now considering 64/64 (removed 0) transitions.
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:42:18] [INFO ] Input system was already deterministic with 64 transitions.
Finished random walk after 904 steps, including 1 resets, run visited all 1 properties in 2 ms. (steps per millisecond=452 )
FORMULA Angiogenesis-PT-20-CTLCardinality-11 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: 5
Deduced a syphon composed of 5 places in 0 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 0 with 10 rules applied. Total rules applied 11 place count 33 transition count 59
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 13 place count 32 transition count 59
Drop transitions removed 1 transitions
Redundant transition composition rules discarded 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 14 place count 32 transition count 58
Partial Post-agglomeration rule applied 3 times.
Drop transitions removed 3 transitions
Iterating global reduction 0 with 3 rules applied. Total rules applied 17 place count 32 transition count 58
Drop transitions removed 1 transitions
Redundant transition composition rules discarded 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 18 place count 32 transition count 57
Applied a total of 18 rules in 11 ms. Remains 32 /39 variables (removed 7) and now considering 57/64 (removed 7) transitions.
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:42:18] [INFO ] Input system was already deterministic with 57 transitions.
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:42:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:42:18] [INFO ] Time to serialize gal into /tmp/CTLCardinality3920220642446998877.gal : 1 ms
[2021-05-11 14:42:18] [INFO ] Time to serialize properties into /tmp/CTLCardinality11450808069628628525.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality3920220642446998877.gal, -t, CGAL, -ctl, /tmp/CTLCardinality11450808069628628525.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality3920220642446998877.gal -t CGAL -ctl /tmp/CTLCardinality11450808069628628525.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:42:48] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:42:48] [INFO ] Applying decomposition
[2021-05-11 14:42:48] [INFO ] Flatten gal took : 12 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph5528206370068160714.txt, -o, /tmp/graph5528206370068160714.bin, -w, /tmp/graph5528206370068160714.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph5528206370068160714.bin, -l, -1, -v, -w, /tmp/graph5528206370068160714.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:42:48] [INFO ] Decomposing Gal with order
[2021-05-11 14:42:48] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:42:48] [INFO ] Removed a total of 45 redundant transitions.
[2021-05-11 14:42:48] [INFO ] Flatten gal took : 7 ms
[2021-05-11 14:42:48] [INFO ] Fuse similar labels procedure discarded/fused a total of 18 labels/synchronizations in 3 ms.
[2021-05-11 14:42:48] [INFO ] Time to serialize gal into /tmp/CTLCardinality6094995361170091996.gal : 1 ms
[2021-05-11 14:42:48] [INFO ] Time to serialize properties into /tmp/CTLCardinality2297348773026517890.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality6094995361170091996.gal, -t, CGAL, -ctl, /tmp/CTLCardinality2297348773026517890.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality6094995361170091996.gal -t CGAL -ctl /tmp/CTLCardinality2297348773026517890.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
Applied a total of 0 rules in 1 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
[2021-05-11 14:43:18] [INFO ] Flatten gal took : 44 ms
[2021-05-11 14:43:18] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:43:18] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 14:43:18] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:43:18] [INFO ] Flatten gal took : 17 ms
[2021-05-11 14:43:18] [INFO ] Time to serialize gal into /tmp/CTLCardinality11605902690409991162.gal : 1 ms
[2021-05-11 14:43:18] [INFO ] Time to serialize properties into /tmp/CTLCardinality16631727221017454304.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality11605902690409991162.gal, -t, CGAL, -ctl, /tmp/CTLCardinality16631727221017454304.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality11605902690409991162.gal -t CGAL -ctl /tmp/CTLCardinality16631727221017454304.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:43:48] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:43:48] [INFO ] Applying decomposition
[2021-05-11 14:43:48] [INFO ] Flatten gal took : 3 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph3036117768705429065.txt, -o, /tmp/graph3036117768705429065.bin, -w, /tmp/graph3036117768705429065.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph3036117768705429065.bin, -l, -1, -v, -w, /tmp/graph3036117768705429065.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:43:49] [INFO ] Decomposing Gal with order
[2021-05-11 14:43:49] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:43:49] [INFO ] Removed a total of 47 redundant transitions.
[2021-05-11 14:43:49] [INFO ] Flatten gal took : 9 ms
[2021-05-11 14:43:49] [INFO ] Fuse similar labels procedure discarded/fused a total of 6 labels/synchronizations in 1 ms.
[2021-05-11 14:43:49] [INFO ] Time to serialize gal into /tmp/CTLCardinality13577137988722198457.gal : 2 ms
[2021-05-11 14:43:49] [INFO ] Time to serialize properties into /tmp/CTLCardinality9055044270287234355.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality13577137988722198457.gal, -t, CGAL, -ctl, /tmp/CTLCardinality9055044270287234355.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality13577137988722198457.gal -t CGAL -ctl /tmp/CTLCardinality9055044270287234355.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Performed 7 Post agglomeration using F-continuation condition.Transition count delta: 7
Deduced a syphon composed of 7 places in 0 ms
Reduce places removed 7 places and 0 transitions.
Iterating global reduction 0 with 14 rules applied. Total rules applied 18 place count 29 transition count 56
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: -6
Deduced a syphon composed of 5 places in 0 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 0 with 10 rules applied. Total rules applied 28 place count 24 transition count 62
Drop transitions removed 14 transitions
Redundant transition composition rules discarded 14 transitions
Iterating global reduction 0 with 14 rules applied. Total rules applied 42 place count 24 transition count 48
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 43 place count 24 transition count 48
Applied a total of 43 rules in 8 ms. Remains 24 /39 variables (removed 15) and now considering 48/64 (removed 16) transitions.
[2021-05-11 14:44:19] [INFO ] Flatten gal took : 2 ms
[2021-05-11 14:44:19] [INFO ] Flatten gal took : 14 ms
[2021-05-11 14:44:19] [INFO ] Input system was already deterministic with 48 transitions.
Finished random walk after 127 steps, including 0 resets, run visited all 1 properties in 1 ms. (steps per millisecond=127 )
FORMULA Angiogenesis-PT-20-CTLCardinality-15 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
[2021-05-11 14:44:19] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:44:19] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
FORMULA Angiogenesis-PT-20-CTLCardinality-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-11 14:44:19] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:44:19] [INFO ] Applying decomposition
[2021-05-11 14:44:19] [INFO ] Flatten gal took : 4 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph9805830239599788565.txt, -o, /tmp/graph9805830239599788565.bin, -w, /tmp/graph9805830239599788565.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph9805830239599788565.bin, -l, -1, -v, -w, /tmp/graph9805830239599788565.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:44:19] [INFO ] Decomposing Gal with order
[2021-05-11 14:44:19] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:44:19] [INFO ] Removed a total of 44 redundant transitions.
[2021-05-11 14:44:19] [INFO ] Flatten gal took : 14 ms
[2021-05-11 14:44:19] [INFO ] Fuse similar labels procedure discarded/fused a total of 15 labels/synchronizations in 1 ms.
[2021-05-11 14:44:19] [INFO ] Time to serialize gal into /tmp/CTLCardinality5528938499330701032.gal : 1 ms
[2021-05-11 14:44:19] [INFO ] Time to serialize properties into /tmp/CTLCardinality15734979870784689317.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality5528938499330701032.gal, -t, CGAL, -ctl, /tmp/CTLCardinality15734979870784689317.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality5528938499330701032.gal -t CGAL -ctl /tmp/CTLCardinality15734979870784689317.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 11 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:05:19] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:05:19] [INFO ] Time to serialize gal into /tmp/CTLCardinality16955819966523842310.gal : 1 ms
[2021-05-11 15:05:19] [INFO ] Time to serialize properties into /tmp/CTLCardinality7696374512361220302.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality16955819966523842310.gal, -t, CGAL, -ctl, /tmp/CTLCardinality7696374512361220302.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality16955819966523842310.gal -t CGAL -ctl /tmp/CTLCardinality7696374512361220302.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 11 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:26:19] [INFO ] Flatten gal took : 4 ms
[2021-05-11 15:26:19] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 15:26:19] [INFO ] Transformed 39 places.
[2021-05-11 15:26:19] [INFO ] Transformed 64 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2021-05-11 15:26:19] [INFO ] Time to serialize gal into /tmp/CTLCardinality1967107308176198100.gal : 1 ms
[2021-05-11 15:26:19] [INFO ] Time to serialize properties into /tmp/CTLCardinality1038231120138298580.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality1967107308176198100.gal, -t, CGAL, -ctl, /tmp/CTLCardinality1038231120138298580.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality1967107308176198100.gal -t CGAL -ctl /tmp/CTLCardinality1038231120138298580.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 11 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,3.5182e+17,559.062,5740992,2,692423,5,3.59024e+07,6,0,220,3.608e+07,0


Converting to forward existential form...Done !

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-20, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r007-tall-162037989900347"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
if [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "UpperBounds" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] || [ "CTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;