Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2021-input.r007-tall-162037989900332.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-10, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r007-tall-162037989900332
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 412K
-rw-r--r-- 1 mcc users 18K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 129K May 10 09:42 CTLCardinality.xml
-rw-r--r-- 1 mcc users 8.8K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 85K May 10 09:42 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.3K Apr 26 07:40 LTLCardinality.txt
-rw-r--r-- 1 mcc users 21K Apr 26 07:40 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K Apr 26 07:40 LTLFireability.txt
-rw-r--r-- 1 mcc users 15K Apr 26 07:40 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.3K Mar 23 01:45 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 15K Mar 23 01:45 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Mar 22 10:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K Mar 22 10:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Mar 22 09:09 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Mar 22 09:09 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 3 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 33K May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-00
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-01
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-02
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-03
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-04
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-05
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-06
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-07
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-08
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-09
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-10-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1620742299172

Running Version 0
[2021-05-11 14:11:40] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-11 14:11:40] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-11 14:11:40] [INFO ] Load time of PNML (sax parser for PT used): 36 ms
[2021-05-11 14:11:40] [INFO ] Transformed 39 places.
[2021-05-11 14:11:40] [INFO ] Transformed 64 transitions.
[2021-05-11 14:11:40] [INFO ] Parsed PT model containing 39 places and 64 transitions in 75 ms.
Parsed 16 properties from file /home/mcc/execution/CTLFireability.xml in 15 ms.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 2 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 2 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:11:40] [INFO ] Reduced 1 identical enabling conditions.
Support contains 38 out of 39 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 39/39 places, 64/64 transitions.
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Applied a total of 1 rules in 10 ms. Remains 38 /39 variables (removed 1) and now considering 64/64 (removed 0) transitions.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:11:40] [INFO ] Computed 7 place invariants in 8 ms
[2021-05-11 14:11:41] [INFO ] Implicit Places using invariants in 117 ms returned []
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:11:41] [INFO ] Computed 7 place invariants in 11 ms
[2021-05-11 14:11:41] [INFO ] Implicit Places using invariants and state equation in 92 ms returned []
Implicit Place search using SMT with State Equation took 237 ms to find 0 implicit places.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:11:41] [INFO ] Computed 7 place invariants in 2 ms
[2021-05-11 14:11:41] [INFO ] Dead Transitions using invariants and state equation in 59 ms returned []
Finished structural reductions, in 1 iterations. Remains : 38/39 places, 64/64 transitions.
[2021-05-11 14:11:41] [INFO ] Initial state reduction rules for CTL removed 2 formulas.
[2021-05-11 14:11:41] [INFO ] Flatten gal took : 34 ms
FORMULA Angiogenesis-PT-10-CTLFireability-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-10-CTLFireability-09 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-11 14:11:41] [INFO ] Flatten gal took : 12 ms
[2021-05-11 14:11:41] [INFO ] Input system was already deterministic with 64 transitions.
Incomplete random walk after 100000 steps, including 2 resets, run finished after 336 ms. (steps per millisecond=297 ) properties (out of 81) seen :78
Running SMT prover for 3 properties.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:11:41] [INFO ] Computed 7 place invariants in 4 ms
[2021-05-11 14:11:41] [INFO ] [Real]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-11 14:11:41] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-11 14:11:41] [INFO ] [Real]Absence check using state equation in 24 ms returned sat
[2021-05-11 14:11:42] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 6 ms.
[2021-05-11 14:11:42] [INFO ] Solution in real domain found non-integer solution.
[2021-05-11 14:11:42] [INFO ] [Nat]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-11 14:11:42] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-11 14:11:42] [INFO ] [Nat]Absence check using state equation in 13 ms returned sat
[2021-05-11 14:11:42] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 18 ms.
[2021-05-11 14:11:42] [INFO ] Added : 56 causal constraints over 12 iterations in 88 ms. Result :sat
[2021-05-11 14:11:42] [INFO ] [Real]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-11 14:11:42] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-11 14:11:42] [INFO ] [Real]Absence check using state equation in 16 ms returned sat
[2021-05-11 14:11:42] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 4 ms.
[2021-05-11 14:11:42] [INFO ] Solution in real domain found non-integer solution.
[2021-05-11 14:11:42] [INFO ] [Nat]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-11 14:11:42] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-11 14:11:42] [INFO ] [Nat]Absence check using state equation in 13 ms returned sat
[2021-05-11 14:11:42] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 5 ms.
[2021-05-11 14:11:42] [INFO ] Added : 55 causal constraints over 12 iterations in 193 ms. Result :sat
[2021-05-11 14:11:42] [INFO ] [Real]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-11 14:11:42] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-11 14:11:42] [INFO ] [Real]Absence check using state equation in 46 ms returned sat
[2021-05-11 14:11:42] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 7 ms.
[2021-05-11 14:11:42] [INFO ] Solution in real domain found non-integer solution.
[2021-05-11 14:11:42] [INFO ] [Nat]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-11 14:11:42] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-11 14:11:42] [INFO ] [Nat]Absence check using state equation in 14 ms returned sat
[2021-05-11 14:11:42] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 4 ms.
[2021-05-11 14:11:42] [INFO ] Added : 47 causal constraints over 10 iterations in 54 ms. Result :sat
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 0 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 36 transition count 63
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 5 place count 35 transition count 62
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 6 place count 35 transition count 62
Applied a total of 6 rules in 14 ms. Remains 35 /38 variables (removed 3) and now considering 62/64 (removed 2) transitions.
[2021-05-11 14:11:42] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:11:42] [INFO ] Flatten gal took : 6 ms
[2021-05-11 14:11:42] [INFO ] Input system was already deterministic with 62 transitions.
[2021-05-11 14:11:42] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:11:42] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:11:42] [INFO ] Time to serialize gal into /tmp/CTLFireability3024546587591943530.gal : 2 ms
[2021-05-11 14:11:42] [INFO ] Time to serialize properties into /tmp/CTLFireability15503008505416346385.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability3024546587591943530.gal, -t, CGAL, -ctl, /tmp/CTLFireability15503008505416346385.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability3024546587591943530.gal -t CGAL -ctl /tmp/CTLFireability15503008505416346385.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,3.57539e+11,11.0901,255288,2,63556,5,1.4661e+06,6,0,204,1.46887e+06,0


Converting to forward existential form...Done !
Detected timeout of ITS tools.
[2021-05-11 14:12:12] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:12:12] [INFO ] Applying decomposition
[2021-05-11 14:12:12] [INFO ] Flatten gal took : 8 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph577132766504718213.txt, -o, /tmp/graph577132766504718213.bin, -w, /tmp/graph577132766504718213.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph577132766504718213.bin, -l, -1, -v, -w, /tmp/graph577132766504718213.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:12:12] [INFO ] Decomposing Gal with order
[2021-05-11 14:12:12] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:12:12] [INFO ] Removed a total of 39 redundant transitions.
[2021-05-11 14:12:12] [INFO ] Flatten gal took : 38 ms
[2021-05-11 14:12:12] [INFO ] Fuse similar labels procedure discarded/fused a total of 4 labels/synchronizations in 4 ms.
[2021-05-11 14:12:12] [INFO ] Time to serialize gal into /tmp/CTLFireability10639481387333143332.gal : 3 ms
[2021-05-11 14:12:12] [INFO ] Time to serialize properties into /tmp/CTLFireability14890635198924146068.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability10639481387333143332.gal, -t, CGAL, -ctl, /tmp/CTLFireability14890635198924146068.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability10639481387333143332.gal -t CGAL -ctl /tmp/CTLFireability14890635198924146068.ctl
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:12:43] [INFO ] Flatten gal took : 6 ms
[2021-05-11 14:12:43] [INFO ] Flatten gal took : 13 ms
[2021-05-11 14:12:43] [INFO ] Applying decomposition
[2021-05-11 14:12:43] [INFO ] Flatten gal took : 6 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph8723172276359116761.txt, -o, /tmp/graph8723172276359116761.bin, -w, /tmp/graph8723172276359116761.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph8723172276359116761.bin, -l, -1, -v, -w, /tmp/graph8723172276359116761.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:12:43] [INFO ] Decomposing Gal with order
[2021-05-11 14:12:43] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:12:43] [INFO ] Removed a total of 41 redundant transitions.
[2021-05-11 14:12:43] [INFO ] Flatten gal took : 23 ms
[2021-05-11 14:12:43] [INFO ] Fuse similar labels procedure discarded/fused a total of 10 labels/synchronizations in 2 ms.
[2021-05-11 14:12:43] [INFO ] Time to serialize gal into /tmp/CTLFireability15475867905109942260.gal : 1 ms
[2021-05-11 14:12:43] [INFO ] Time to serialize properties into /tmp/CTLFireability11912350927054740291.ctl : 6 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability15475867905109942260.gal, -t, CGAL, -ctl, /tmp/CTLFireability11912350927054740291.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability15475867905109942260.gal -t CGAL -ctl /tmp/CTLFireability11912350927054740291.ctl
No direction supplied, using forward translation only.
Parsed 14 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:33:03] [INFO ] Flatten gal took : 6 ms
[2021-05-11 14:33:03] [INFO ] Time to serialize gal into /tmp/CTLFireability15005176999566863927.gal : 1 ms
[2021-05-11 14:33:03] [INFO ] Time to serialize properties into /tmp/CTLFireability2597901246997373435.ctl : 3 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability15005176999566863927.gal, -t, CGAL, -ctl, /tmp/CTLFireability2597901246997373435.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability15005176999566863927.gal -t CGAL -ctl /tmp/CTLFireability2597901246997373435.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 14 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.22646e+11,21.6903,482120,2,119391,5,2.81332e+06,6,0,219,2.7509e+06,0


Converting to forward existential form...Done !
original formula: EF((AF(((EG((((((((KdStarGStarP3k>=1)||(AktP3>=1))||(PtP2>=1))||(KdStarGStarP3kStarP3P2>=1))||(KdStarGStarPgStarP2>=1))||((Gab1>=1)&&(KdStar>=1)))||(KdStarG>=1))) * AG((((((((KdStarGStarP3kStarP2>=1)||((KdStarGStar>=1)&&(P3k>=1)))||(PtP3>=1))||((GStarPgP3>=1)&&(KdStar>=1)))||((KdStarGStarP3>=1)&&(P3k>=1)))||(KdStarGStarPgStarP3P2>=1))||((KdStarGStar>=1)&&(Pg>=1))))) * (EF(((((((KdStarGStarP3kP3>=1)||(KdStarGStarP3kStarP2>=1))||(PtP2>=1))||(KdStarGStarPgP3>=1))||(KdStarGStarPgStarP3P2>=1))||((KdStar>=1)&&(Pg>=1)))) + A(((KdStarG>=1)||(KdStarGP3>=1)) U ((((KdStarPgStar>=1)&&(Pip2>=1))||((GStarP3>=1)&&(Pg>=1)))||((KdStar>=1)&&(Pg>=1))))))) + ((((((KdStarGStarP3kStarP3P2<1)&&(KdStarGStarPgStarP2<1))&&(KdStarGP3<1)) * !(AX(((((((KdStarGStarP3kP3>=1)||((KdStarPgStar>=1)&&(Pip2>=1)))||((Pip2>=1)&&(Pten>=1)))||((KdStarGStarP3>=1)&&(P3k>=1)))||((GP3>=1)&&(KdStar>=1)))||(KdStarPgStarP2>=1))))) * !(EG((((((((((((((((((((((((((AktP3>=1)||(DAGE>=1))||((Pip3>=1)&&(Pten>=1)))||(KdStarGStarP3k>=1))||(PtP2>=1))||((KdStarGStar>=1)&&(Pip3>=1)))||((Gab1>=1)&&(KdStar>=1)))||((KdStarGStarP3kStarP3>=1)&&(Pip2>=1)))||(KdStarPgStarP2>=1))||((KdStarGStarPgStar>=1)&&(Pip2>=1)))||(KdStarGStarP3kStarP3P2>=1))||(KdStarGStarPg>=1))||((GP3>=1)&&(KdStar>=1)))||(KdStarGStarPgStarP3P2>=1))||((Pip3>=1)&&(PtP2>=1)))||((KdStarGStarPgStarP3>=1)&&(Pip2>=1)))||(KdStarGStarP3>=1))||((KdStarGStarPgStar>=1)&&(Pip2>=1)))||((Akt>=1)&&(Pip3>=1)))||((KdStarGStarP3>=1)&&(P3k>=1)))||(KdStarGStarPgStarP3P2>=1))||(KdStarG>=1))||((Pip3>=1)&&(PtP2>=1)))||((KdStar>=1)&&(Pg>=1)))||(KdStarGStarP3>=1))))) * ((Pip2<1)||(Pten<1)))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * !(EG(!(((EG((((((((KdStarGStarP3k>=1)||(AktP3>=1))||(PtP2>=1))||(KdStarGStarP3kStarP3P2>=1))||(KdStarGStarPgStarP2>=1))||((Gab1>=1)&&(KdStar>=1)))||(KdStarG>=1))) * !(E(TRUE U !((((((((KdStarGStarP3kStarP2>=1)||((KdStarGStar>=1)&&(P3k>=1)))||(PtP3>=1))||((GStarPgP3>=1)&&(KdStar>=1)))||((KdStarGStarP3>=1)&&(P3k>=1)))||(KdStarGStarPgStarP3P2>=1))||((KdStarGStar>=1)&&(Pg>=1))))))) * (E(TRUE U ((((((KdStarGStarP3kP3>=1)||(KdStarGStarP3kStarP2>=1))||(PtP2>=1))||(KdStarGStarPgP3>=1))||(KdStarGStarPgStarP3P2>=1))||((KdStar>=1)&&(Pg>=1)))) + !((E(!(((((KdStarPgStar>=1)&&(Pip2>=1))||((GStarP3>=1)&&(Pg>=1)))||((KdStar>=1)&&(Pg>=1)))) U (!(((KdStarG>=1)||(KdStarGP3>=1))) * !(((((KdStarPgStar>=1)&&(Pip2>=1))||((GStarP3>=1)&&(Pg>=1)))||((KdStar>=1)&&(Pg>=1)))))) + EG(!(((((KdStarPgStar>=1)&&(Pip2>=1))||((GStarP3>=1)&&(Pg>=1)))||((KdStar>=1)&&(Pg>=1)))))))))))))] != FALSE + [(((FwdU(Init,TRUE) * ((Pip2<1)||(Pten<1))) * ((((KdStarGStarP3kStarP3P2<1)&&(KdStarGStarPgStarP2<1))&&(KdStarGP3<1)) * !(!(EX(!(((((((KdStarGStarP3kP3>=1)||((KdStarPgStar>=1)&&(Pip2>=1)))||((Pip2>=1)&&(Pten>=1)))||((KdStarGStarP3>=1)&&(P3k>=1)))||((GP3>=1)&&(KdStar>=1)))||(KdStarPgStarP2>=1)))))))) * !(EG((((((((((((((((((((((((((AktP3>=1)||(DAGE>=1))||((Pip3>=1)&&(Pten>=1)))||(KdStarGStarP3k>=1))||(PtP2>=1))||((KdStarGStar>=1)&&(Pip3>=1)))||((Gab1>=1)&&(KdStar>=1)))||((KdStarGStarP3kStarP3>=1)&&(Pip2>=1)))||(KdStarPgStarP2>=1))||((KdStarGStarPgStar>=1)&&(Pip2>=1)))||(KdStarGStarP3kStarP3P2>=1))||(KdStarGStarPg>=1))||((GP3>=1)&&(KdStar>=1)))||(KdStarGStarPgStarP3P2>=1))||((Pip3>=1)&&(PtP2>=1)))||((KdStarGStarPgStarP3>=1)&&(Pip2>=1)))||(KdStarGStarP3>=1))||((KdStarGStarPgStar>=1)&&(Pip2>=1)))||((Akt>=1)&&(Pip3>=1)))||((KdStarGStarP3>=1)&&(P3k>=1)))||(KdStarGStarPgStarP3P2>=1))||(KdStarG>=1))||((Pip3>=1)&&(PtP2>=1)))||((KdStar>=1)&&(Pg>=1)))||(KdStarGStarP3>=1)))))] != FALSE)
Reverse transition relation is NOT exact ! Due to transitions t12, t24, t51, t57, t61, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/59/5/64
(forward)formula 0,1,1124.14,5497044,1,0,454,3.56878e+07,15,221,1069,2.73719e+07,14
FORMULA Angiogenesis-PT-10-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(((((((((((KdStarGStarP3kStarP2<1)&&(PtP3<1))&&(KdStarGStarPgStarP2<1))&&(KdStarGStarPgStarP3P2<1)) * !(AG(EF((((((KdStarGStarP3k<1)&&((KdStarGStar<1)||(Pip3<1)))&&((Pip2<1)||(Pten<1)))&&(KdStarG<1))&&((KdStarGStarPgStarP3<1)||(Pip2<1))))))) * ((KdStarPgStar<1)||(Pip2<1))) * ((KdStarGStar<1)||(P3k<1))) * ((Pip3<1)||(PtP2<1))) * ((GStarP3<1)||(Pg<1))) * ((KdStarGStarPgStarP3<1)||(Pip2<1))))
=> equivalent forward existential formula: [(FwdU(((((((FwdU(Init,TRUE) * ((KdStarGStarPgStarP3<1)||(Pip2<1))) * ((GStarP3<1)||(Pg<1))) * ((Pip3<1)||(PtP2<1))) * ((KdStarGStar<1)||(P3k<1))) * ((KdStarPgStar<1)||(Pip2<1))) * ((((KdStarGStarP3kStarP2<1)&&(PtP3<1))&&(KdStarGStarPgStarP2<1))&&(KdStarGStarPgStarP3P2<1))),TRUE) * !(E(TRUE U (((((KdStarGStarP3k<1)&&((KdStarGStar<1)||(Pip3<1)))&&((Pip2<1)||(Pten<1)))&&(KdStarG<1))&&((KdStarGStarPgStarP3<1)||(Pip2<1))))))] != FALSE
(forward)formula 1,0,1143.1,5497044,1,0,454,3.56878e+07,21,221,1119,2.73719e+07,22
FORMULA Angiogenesis-PT-10-CTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
Detected timeout of ITS tools.
[2021-05-11 14:53:23] [INFO ] Flatten gal took : 19 ms
[2021-05-11 14:53:23] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 14:53:23] [INFO ] Transformed 38 places.
[2021-05-11 14:53:23] [INFO ] Transformed 64 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2021-05-11 14:53:23] [INFO ] Time to serialize gal into /tmp/CTLFireability699535252041343236.gal : 1 ms
[2021-05-11 14:53:23] [INFO ] Time to serialize properties into /tmp/CTLFireability7098573166362206856.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability699535252041343236.gal, -t, CGAL, -ctl, /tmp/CTLFireability7098573166362206856.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability699535252041343236.gal -t CGAL -ctl /tmp/CTLFireability7098573166362206856.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 12 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.22646e+11,19.3951,396160,2,55259,5,2.21101e+06,6,0,219,2.26017e+06,0


Converting to forward existential form...Done !
original formula: (E(E(AG((AktP3>=1)) U !(A(((((((KdStarGStarPgP3>=1)||(GStarP3kP3>=1))||((KdStarGStar>=1)&&(Pg>=1)))||((Gab1>=1)&&(KdStar>=1)))||(KdStarPg>=1))||((KdStar>=1)&&(Pg>=1))) U ((KdStarGStarPgP3>=1)||((GStarP3>=1)&&(Pg>=1)))))) U AF(EX(AG(((((((KdStarGStarP3kP3>=1)||(PtP3>=1))||(KdStarGStarP3kStarP3P2>=1))||((Pip3>=1)&&(Pten>=1)))||((KdStarGStarP3kStarP3>=1)&&(Pip2>=1)))||((GStarP3>=1)&&(Pg>=1))))))) * AF(((((((((E((EX((((((KdStarGStarP3kP3>=1)||(PtP3>=1))||(PtP3P2>=1))||(GStarP3kP3>=1))||((KdStarGStarPgStarP3>=1)&&(Pip2>=1)))) * ((((((((KdStarPgStar>=1)&&(Pip2>=1))||((KdStarGStarP3kStar>=1)&&(Pip2>=1)))||(DAGE>=1))||((Akt>=1)&&(Pip3>=1)))||(KdStarGStarPgP3>=1))||(KdStarG>=1))||((GStarP3>=1)&&(Pg>=1)))) U AF(((DAGE>=1)||(KdStarGP3>=1)))) + (KdStarGStarP3k>=1)) + (KdStarGStarP3kStarP2>=1)) + (DAGE>=1)) + (KdStarGStarPg>=1)) + ((DAG>=1)&&(Enz>=1))) + ((Pip2>=1)&&(Pten>=1))) + (KdStarG>=1)) + EX(((((KdStarGStarP3k>=1)||(DAGE>=1))||(KdStarPg>=1))||(KdStarGStarP3>=1))))))
=> equivalent forward existential formula: ([(Init * !(E(E(!(E(TRUE U !((AktP3>=1)))) U !(!((E(!(((KdStarGStarPgP3>=1)||((GStarP3>=1)&&(Pg>=1)))) U (!(((((((KdStarGStarPgP3>=1)||(GStarP3kP3>=1))||((KdStarGStar>=1)&&(Pg>=1)))||((Gab1>=1)&&(KdStar>=1)))||(KdStarPg>=1))||((KdStar>=1)&&(Pg>=1)))) * !(((KdStarGStarPgP3>=1)||((GStarP3>=1)&&(Pg>=1)))))) + EG(!(((KdStarGStarPgP3>=1)||((GStarP3>=1)&&(Pg>=1))))))))) U !(EG(!(EX(!(E(TRUE U !(((((((KdStarGStarP3kP3>=1)||(PtP3>=1))||(KdStarGStarP3kStarP3P2>=1))||((Pip3>=1)&&(Pten>=1)))||((KdStarGStarP3kStarP3>=1)&&(Pip2>=1)))||((GStarP3>=1)&&(Pg>=1)))))))))))))] = FALSE * [FwdG(Init,!(((((((((E((EX((((((KdStarGStarP3kP3>=1)||(PtP3>=1))||(PtP3P2>=1))||(GStarP3kP3>=1))||((KdStarGStarPgStarP3>=1)&&(Pip2>=1)))) * ((((((((KdStarPgStar>=1)&&(Pip2>=1))||((KdStarGStarP3kStar>=1)&&(Pip2>=1)))||(DAGE>=1))||((Akt>=1)&&(Pip3>=1)))||(KdStarGStarPgP3>=1))||(KdStarG>=1))||((GStarP3>=1)&&(Pg>=1)))) U !(EG(!(((DAGE>=1)||(KdStarGP3>=1)))))) + (KdStarGStarP3k>=1)) + (KdStarGStarP3kStarP2>=1)) + (DAGE>=1)) + (KdStarGStarPg>=1)) + ((DAG>=1)&&(Enz>=1))) + ((Pip2>=1)&&(Pten>=1))) + (KdStarG>=1)) + EX(((((KdStarGStarP3k>=1)||(DAGE>=1))||(KdStarPg>=1))||(KdStarGStarP3>=1))))))] = FALSE)
Reverse transition relation is NOT exact ! Due to transitions t12, t24, t51, t57, t61, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/59/5/64

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-10"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-10, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r007-tall-162037989900332"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-10.tgz
mv Angiogenesis-PT-10 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;