Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fko/mcc2020-input.r227-oct2-159033546900578.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fko/mcc2020-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
...................................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is ViralEpidemic-PT-S16D2C4A02, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r227-oct2-159033546900578
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 6.3M
-rw-r--r-- 1 mcc users 4.6K May 14 05:33 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 14 05:33 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 13 23:32 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 13 23:32 CTLFireability.xml
-rw-r--r-- 1 mcc users 3.8K May 14 10:07 LTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 14 10:07 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 14 10:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 14 10:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 12 20:42 NewModel
-rw-r--r-- 1 mcc users 4.4K May 13 16:37 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 13 16:37 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.9K May 13 12:22 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 13 12:22 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 13 16:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 13 16:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 12 20:42 equiv_col
-rw-r--r-- 1 mcc users 11 May 12 20:42 instance
-rw-r--r-- 1 mcc users 6 May 12 20:42 iscolored
-rw-r--r-- 1 mcc users 6.1M May 12 20:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-00
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-01
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-02
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-03
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-04
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-05
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-06
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-07
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-08
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-09
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-10
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-11
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-12
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-13
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-14
FORMULA_NAME ViralEpidemic-PT-S16D2C4A02-15

=== Now, execution of the tool begins

BK_START 1590510626611

[2020-05-26 16:30:28] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-26 16:30:28] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-26 16:30:28] [INFO ] Load time of PNML (sax parser for PT used): 352 ms
[2020-05-26 16:30:28] [INFO ] Transformed 4915 places.
[2020-05-26 16:30:28] [INFO ] Transformed 9009 transitions.
[2020-05-26 16:30:28] [INFO ] Parsed PT model containing 4915 places and 9009 transitions in 423 ms.
Parsed 16 properties from file /home/mcc/execution/LTLFireability.xml in 33 ms.
Working with output stream class java.io.PrintStream
Finished random walk after 6328 steps, including 8 resets, run visited all 40 properties in 333 ms. (steps per millisecond=19 )
[2020-05-26 16:30:29] [INFO ] Initial state reduction rules for CTL removed 2 formulas.
[2020-05-26 16:30:29] [INFO ] Flatten gal took : 472 ms
FORMULA ViralEpidemic-PT-S16D2C4A02-13 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA ViralEpidemic-PT-S16D2C4A02-05 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-26 16:30:30] [INFO ] Flatten gal took : 347 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
[2020-05-26 16:30:31] [INFO ] Applying decomposition
[2020-05-26 16:30:31] [INFO ] Flatten gal took : 454 ms
[2020-05-26 16:30:31] [INFO ] Input system was already deterministic with 9009 transitions.
[2020-05-26 16:30:31] [INFO ] Too many transitions (9009) to apply POR reductions. Disabling POR matrices.
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph17982823455179106085.txt, -o, /tmp/graph17982823455179106085.bin, -w, /tmp/graph17982823455179106085.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph17982823455179106085.bin, -l, -1, -v, -w, /tmp/graph17982823455179106085.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-26 16:30:32] [INFO ] Decomposing Gal with order
[2020-05-26 16:30:32] [INFO ] Built C files in 1947ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
[2020-05-26 16:30:33] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-26 16:30:34] [INFO ] Removed a total of 12560 redundant transitions.
[2020-05-26 16:30:34] [INFO ] Flatten gal took : 760 ms
[2020-05-26 16:30:35] [INFO ] Fuse similar labels procedure discarded/fused a total of 6105 labels/synchronizations in 686 ms.
[2020-05-26 16:30:35] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 41 ms
[2020-05-26 16:30:35] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 14 LTL properties
Checking formula 0 : !(((G(X("(((((u376.dFactor2__6_15>=1)&&(u375.patient_6_15_8>=1))||((u744.cFactor2__14_4>=1)&&(u742.patient_14_4_9>=1)))&&(u376.dFactor2__6_15>=1))&&(u375.patient_6_15_8>=1))")))||(!(X("((u538.cFactor2__10_2>=1)&&(u536.patient_10_2_7>=1))")))))
Formula 0 simplified : !(GX"(((((u376.dFactor2__6_15>=1)&&(u375.patient_6_15_8>=1))||((u744.cFactor2__14_4>=1)&&(u742.patient_14_4_9>=1)))&&(u376.dFactor2__6_15>=1))&&(u375.patient_6_15_8>=1))" | !X"((u538.cFactor2__10_2>=1)&&(u536.patient_10_2_7>=1))")
built 865 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 24 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
built 26 ordering constraints for composite.
Compilation finished in 136069 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 108 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, ( [](X((LTLAP0==true)))) || ( !( X((LTLAP1==true))) ) , --buchi-type=spotba], workingDir=/home/mcc/execution]
/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc: error while loading shared libraries: libltdl.so.7: cannot open shared object file: No such file or directory
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, ( [](X((LTLAP0==true)))) || ( !( X((LTLAP1==true))) ) , --buchi-type=spotba], workingDir=/home/mcc/execution]
127
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, ( [](X((LTLAP0==true)))) || ( !( X((LTLAP1==true))) ) , --buchi-type=spotba], workingDir=/home/mcc/execution]
127
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:170)
at fr.lip6.move.gal.application.LTSminRunner.access$10(LTSminRunner.java:124)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:93)
at java.base/java.lang.Thread.run(Thread.java:834)
Detected timeout of ITS tools.
[2020-05-26 16:50:37] [INFO ] Flatten gal took : 456 ms
[2020-05-26 16:50:37] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 63 ms
[2020-05-26 16:50:37] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 6 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 14 LTL properties
Checking formula 0 : !(((G(X("(((((dFactor2__6_15>=1)&&(patient_6_15_8>=1))||((cFactor2__14_4>=1)&&(patient_14_4_9>=1)))&&(dFactor2__6_15>=1))&&(patient_6_15_8>=1))")))||(!(X("((cFactor2__10_2>=1)&&(patient_10_2_7>=1))")))))
Formula 0 simplified : !(GX"(((((dFactor2__6_15>=1)&&(patient_6_15_8>=1))||((cFactor2__14_4>=1)&&(patient_14_4_9>=1)))&&(dFactor2__6_15>=1))&&(patient_6_15_8>=1))" | !X"((cFactor2__10_2>=1)&&(patient_10_2_7>=1))")
Detected timeout of ITS tools.
[2020-05-26 17:10:45] [INFO ] Flatten gal took : 5775 ms
[2020-05-26 17:10:47] [INFO ] Input system was already deterministic with 9009 transitions.
[2020-05-26 17:10:47] [INFO ] Transformed 4915 places.
[2020-05-26 17:10:47] [INFO ] Transformed 9009 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-26 17:10:49] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 45 ms
[2020-05-26 17:10:49] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 14 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Read 14 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !(((G(X("(((((dFactor2__6_15>=1)&&(patient_6_15_8>=1))||((cFactor2__14_4>=1)&&(patient_14_4_9>=1)))&&(dFactor2__6_15>=1))&&(patient_6_15_8>=1))")))||(!(X("((cFactor2__10_2>=1)&&(patient_10_2_7>=1))")))))
Formula 0 simplified : !(GX"(((((dFactor2__6_15>=1)&&(patient_6_15_8>=1))||((cFactor2__14_4>=1)&&(patient_14_4_9>=1)))&&(dFactor2__6_15>=1))&&(patient_6_15_8>=1))" | !X"((cFactor2__10_2>=1)&&(patient_10_2_7>=1))")

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="ViralEpidemic-PT-S16D2C4A02"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is ViralEpidemic-PT-S16D2C4A02, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r227-oct2-159033546900578"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/ViralEpidemic-PT-S16D2C4A02.tgz
mv ViralEpidemic-PT-S16D2C4A02 execution
cd execution
if [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "UpperBounds" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] || [ "LTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;