Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fko/mcc2020-input.r227-oct2-159033546700475.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fko/mcc2020-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.............................................................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is ViralEpidemic-PT-S02D1C1A10, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r227-oct2-159033546700475
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 8.3M
-rw-r--r-- 1 mcc users 4.4K May 14 04:12 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 14 04:12 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K May 13 22:11 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 13 22:11 CTLFireability.xml
-rw-r--r-- 1 mcc users 5.1K May 14 10:07 LTLCardinality.txt
-rw-r--r-- 1 mcc users 29K May 14 10:07 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 14 10:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 14 10:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 12 20:42 NewModel
-rw-r--r-- 1 mcc users 4.8K May 13 15:16 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 13 15:16 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.4K May 13 11:00 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 13 11:00 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K May 13 16:53 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 13 16:53 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 12 20:42 equiv_col
-rw-r--r-- 1 mcc users 11 May 12 20:42 instance
-rw-r--r-- 1 mcc users 6 May 12 20:42 iscolored
-rw-r--r-- 1 mcc users 8.1M May 12 20:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-00
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-01
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-02
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-03
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-04
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-05
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-06
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-07
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-08
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-09
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-10
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-11
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-12
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-13
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-14
FORMULA_NAME ViralEpidemic-PT-S02D1C1A10-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1590500457429

[2020-05-26 13:40:59] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-26 13:40:59] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-26 13:41:00] [INFO ] Load time of PNML (sax parser for PT used): 343 ms
[2020-05-26 13:41:00] [INFO ] Transformed 8189 places.
[2020-05-26 13:41:00] [INFO ] Transformed 10235 transitions.
[2020-05-26 13:41:00] [INFO ] Parsed PT model containing 8189 places and 10235 transitions in 440 ms.
Parsed 16 properties from file /home/mcc/execution/CTLCardinality.xml in 145 ms.
Incomplete random walk after 100000 steps, including 9567 resets, run finished after 12647 ms. (steps per millisecond=7 ) properties seen :[1, 0, 1, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 0, 1, 1]
// Phase 1: matrix 10235 rows 8189 cols
[2020-05-26 13:41:14] [INFO ] Invariants computation overflowed in 1308 ms
[2020-05-26 13:41:16] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:41:34] [INFO ] [Real]Absence check using state equation in 18516 ms returned (error "Solver has unexpectedly terminated")
[2020-05-26 13:41:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:41:54] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:41:54] [INFO ] [Real]Absence check using state equation in 19405 ms returned (error "Failed to check-sat")
[2020-05-26 13:41:55] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:42:14] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:42:14] [INFO ] [Real]Absence check using state equation in 19527 ms returned (error "Failed to check-sat")
[2020-05-26 13:42:15] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:42:34] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:42:34] [INFO ] [Real]Absence check using state equation in 18806 ms returned unknown
[2020-05-26 13:42:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:42:54] [INFO ] [Real]Absence check using state equation in 18839 ms returned (error "Solver has unexpectedly terminated")
[2020-05-26 13:42:55] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:43:14] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:43:14] [INFO ] [Real]Absence check using state equation in 19641 ms returned unknown
[2020-05-26 13:43:15] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:43:34] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:43:34] [INFO ] [Real]Absence check using state equation in 19599 ms returned (error "Failed to check-sat")
[2020-05-26 13:43:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:43:54] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:43:54] [INFO ] [Real]Absence check using state equation in 19574 ms returned (error "Failed to check-sat")
[2020-05-26 13:43:55] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:44:14] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:44:14] [INFO ] [Real]Absence check using state equation in 19362 ms returned (error "Failed to check-sat")
[2020-05-26 13:44:15] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:44:34] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:44:34] [INFO ] [Real]Absence check using state equation in 19611 ms returned (error "Failed to check-sat")
[2020-05-26 13:44:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:44:54] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:44:54] [INFO ] [Real]Absence check using state equation in 19291 ms returned (error "Failed to check-sat")
[2020-05-26 13:44:55] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:45:14] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:45:14] [INFO ] [Real]Absence check using state equation in 19577 ms returned (error "Failed to check-sat")
[2020-05-26 13:45:15] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:45:34] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:45:34] [INFO ] [Real]Absence check using state equation in 18899 ms returned unknown
[2020-05-26 13:45:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:45:54] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:45:54] [INFO ] [Real]Absence check using state equation in 19227 ms returned (error "Failed to check-sat")
[2020-05-26 13:45:55] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:46:14] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:46:14] [INFO ] [Real]Absence check using state equation in 19595 ms returned (error "Failed to check-sat")
[2020-05-26 13:46:15] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:46:34] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:46:34] [INFO ] [Real]Absence check using state equation in 19554 ms returned (error "Failed to check-sat")
[2020-05-26 13:46:36] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:46:54] [WARNING] SMT solver failed with error :java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Failed to assert expression: java.io.IOException: Broken pipe (= s1411 (- t1746 (+ t1751 t1762 t1766)))") while checking expression at index 16
[2020-05-26 13:46:55] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:47:14] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:47:14] [INFO ] [Real]Absence check using state equation in 19609 ms returned (error "Failed to check-sat")
[2020-05-26 13:47:16] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:47:34] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:47:34] [INFO ] [Real]Absence check using state equation in 18897 ms returned unknown
[2020-05-26 13:47:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 13:47:54] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-26 13:47:54] [INFO ] [Real]Absence check using state equation in 19482 ms returned (error "Failed to check-sat")
[2020-05-26 13:47:55] [INFO ] Flatten gal took : 489 ms
[2020-05-26 13:47:56] [INFO ] Flatten gal took : 347 ms
[2020-05-26 13:47:56] [INFO ] Applying decomposition
[2020-05-26 13:47:56] [INFO ] Flatten gal took : 298 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph213674453993694964.txt, -o, /tmp/graph213674453993694964.bin, -w, /tmp/graph213674453993694964.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph213674453993694964.bin, -l, -1, -v, -w, /tmp/graph213674453993694964.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-26 13:47:57] [INFO ] Decomposing Gal with order
[2020-05-26 13:47:58] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-26 13:48:04] [INFO ] Removed a total of 8535 redundant transitions.
[2020-05-26 13:48:04] [INFO ] Flatten gal took : 694 ms
[2020-05-26 13:48:07] [INFO ] Fuse similar labels procedure discarded/fused a total of 24296 labels/synchronizations in 1876 ms.
[2020-05-26 13:48:08] [INFO ] Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 210 ms
[2020-05-26 13:48:08] [INFO ] Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
[2020-05-26 14:10:36] [INFO ] Flatten gal took : 1165 ms
[2020-05-26 14:10:36] [INFO ] Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 55 ms
[2020-05-26 14:10:36] [INFO ] Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
[2020-05-26 14:33:00] [INFO ] Flatten gal took : 2500 ms
[2020-05-26 14:33:02] [INFO ] Input system was already deterministic with 10235 transitions.
[2020-05-26 14:33:02] [INFO ] Transformed 8189 places.
[2020-05-26 14:33:02] [INFO ] Transformed 10235 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-26 14:33:06] [INFO ] Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 31 ms
[2020-05-26 14:33:06] [INFO ] Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 5 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="ViralEpidemic-PT-S02D1C1A10"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is ViralEpidemic-PT-S02D1C1A10, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r227-oct2-159033546700475"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/ViralEpidemic-PT-S02D1C1A10.tgz
mv ViralEpidemic-PT-S02D1C1A10 execution
cd execution
if [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "UpperBounds" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] || [ "CTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;