Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fko/mcc2020-input.r156-oct2-158972914000392.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fko/mcc2020-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
....................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is SafeBus-COL-80, examination is StateSpace
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r156-oct2-158972914000392
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 220K
-rw-r--r-- 1 mcc users 3.5K Apr 12 12:11 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K Apr 12 12:11 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Apr 11 13:51 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 11 13:51 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:38 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.6K Apr 14 12:51 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Apr 28 14:02 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K Apr 14 12:51 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 28 14:02 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.6K Apr 10 17:26 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K Apr 10 17:26 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Apr 10 00:22 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K Apr 10 00:22 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Apr 10 22:29 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Apr 10 22:29 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 Mar 24 05:38 equiv_pt
-rw-r--r-- 1 mcc users 3 Mar 24 05:38 instance
-rw-r--r-- 1 mcc users 5 Mar 24 05:38 iscolored
-rw-r--r-- 1 mcc users 45K Mar 24 05:38 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

no data necessary for post analysis


=== Now, execution of the tool begins

BK_START 1589897059371

[2020-05-19 14:04:21] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StateSpace, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-19 14:04:21] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-19 14:04:21] [INFO ] Detected file is not PT type :http://www.pnml.org/version-2009/grammar/symmetricnet
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[2020-05-19 14:04:22] [INFO ] Load time of PNML (colored model parsed with PNMLFW) : 626 ms
[2020-05-19 14:04:22] [INFO ] sort/places :
Dom->AMC,wait_ack,
Dot->cable_free,ACK,T_out,R_tout,S_tout,FMCb,
It->Cpt2,Cpt1,msgl,cable_used,FMC,wait_cable,listen,RMC,PMC,MSG,wait_msg,loop_em,

[2020-05-19 14:04:22] [INFO ] Detected 1 constant HL places corresponding to 80 PT places.
[2020-05-19 14:04:22] [INFO ] Imported 20 HL places and 14 HL transitions for a total of 13766 PT places and 4.2035361E7 transition bindings in 46 ms.
[2020-05-19 14:04:22] [INFO ] Computed order based on color domains.
[2020-05-19 14:04:24] [INFO ] Unfolded HLPN to a Petri net with 13766 places and 550801 transitions in 1857 ms.
[2020-05-19 14:04:24] [INFO ] Unfolded HLPN properties in 0 ms.
Deduced a syphon composed of 80 places in 331 ms
Reduce places removed 160 places and 160 transitions.
[2020-05-19 14:04:57] [INFO ] Flatten gal took : 28479 ms
[2020-05-19 14:05:24] [INFO ] Applying decomposition
[2020-05-19 14:05:50] [INFO ] Flatten gal took : 26737 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph10880424061290641440.txt, -o, /tmp/graph10880424061290641440.bin, -w, /tmp/graph10880424061290641440.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph10880424061290641440.bin, -l, -1, -v, -w, /tmp/graph10880424061290641440.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-19 14:06:49] [INFO ] Decomposing Gal with order
[2020-05-19 14:06:49] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-19 14:13:48] [INFO ] Removed a total of 2039112 redundant transitions.
[2020-05-19 14:14:17] [INFO ] Flatten gal took : 421178 ms
[2020-05-19 14:25:08] [INFO ] Fuse similar labels procedure discarded/fused a total of 44929 labels/synchronizations in 606988 ms.
[2020-05-19 14:25:11] [INFO ] Time to serialize gal into /home/mcc/execution/StateSpace.pnml.gal : 2614 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/StateSpace.pnml.gal, -t, CGAL, --stats], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/StateSpace.pnml.gal -t CGAL --stats
ITS-tools command line returned an error code 137
[2020-05-19 14:26:13] [INFO ] Applying decomposition
[2020-05-19 14:26:45] [INFO ] Flatten gal took : 31998 ms
[2020-05-19 14:27:09] [INFO ] Decomposing Gal with order
[2020-05-19 14:27:11] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-19 14:38:22] [INFO ] Removed a total of 3159431 redundant transitions.
[2020-05-19 14:38:32] [INFO ] Flatten gal took : 100461 ms
[2020-05-19 14:39:09] [INFO ] Fuse similar labels procedure discarded/fused a total of 640 labels/synchronizations in 31480 ms.
[2020-05-19 14:39:11] [INFO ] Time to serialize gal into /home/mcc/execution/StateSpace.pnml.gal : 1981 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/StateSpace.pnml.gal, -t, CGAL, --stats], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/StateSpace.pnml.gal -t CGAL --stats
ITS-tools command line returned an error code 137
[2020-05-19 14:40:17] [INFO ] Flatten gal took : 31234 ms
[2020-05-19 14:40:44] [INFO ] Input system was already deterministic with 550641 transitions.
[2020-05-19 14:40:46] [INFO ] Transformed 13606 places.
[2020-05-19 14:40:52] [INFO ] Transformed 550641 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
java.lang.NullPointerException
at fr.lip6.move.gal.application.Application.computeOrderWithGreatSPN(Application.java:1228)
at fr.lip6.move.gal.application.Application.runMultiITS(Application.java:1176)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:302)
at fr.lip6.move.gal.application.Application.start(Application.java:154)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:43)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:137)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:107)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:660)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:597)
at org.eclipse.equinox.launcher.Main.run(Main.java:1468)
at org.eclipse.equinox.launcher.Main.main(Main.java:1441)
[2020-05-19 14:41:19] [INFO ] Time to serialize gal into /home/mcc/execution/StateSpace.pnml.gal : 1651 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/StateSpace.pnml.gal, -t, CGAL, --stats, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/StateSpace.pnml.gal -t CGAL --stats --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
ITS-tools command line returned an error code 137

BK_STOP 1589899285931

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StateSpace = StateSpace ]]
+ [[ -f modelMain.xml ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution StateSpace -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination StateSpace -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SafeBus-COL-80"
export BK_EXAMINATION="StateSpace"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is SafeBus-COL-80, examination is StateSpace"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r156-oct2-158972914000392"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/SafeBus-COL-80.tgz
mv SafeBus-COL-80 execution
cd execution
if [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "UpperBounds" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] || [ "StateSpace" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StateSpace" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StateSpace" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StateSpace.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StateSpace.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StateSpace.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StateSpace.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] ; then
echo "FORMULA_NAME StateSpace"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;