Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2020-input.r132-tajo-158961400300116.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
..................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Philosophers-PT-010000, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r132-tajo-158961400300116
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 172M
-rw-r--r-- 1 mcc users 2.8M Apr 27 15:14 CTLCardinality.txt
-rw-r--r-- 1 mcc users 9.0M Apr 27 15:14 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.0M Apr 27 15:14 CTLFireability.txt
-rw-r--r-- 1 mcc users 22M Apr 27 15:14 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Apr 27 15:14 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7M Apr 27 15:14 LTLCardinality.txt
-rw-r--r-- 1 mcc users 21M Apr 28 14:02 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.5M Apr 27 15:14 LTLFireability.txt
-rw-r--r-- 1 mcc users 15M Apr 28 14:02 LTLFireability.xml
-rw-r--r-- 1 mcc users 6.6M Apr 27 15:14 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22M Apr 27 15:14 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.2M Apr 27 15:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14M Apr 27 15:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.1M Apr 27 15:14 UpperBounds.txt
-rw-r--r-- 1 mcc users 2.6M Apr 27 15:14 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 Apr 27 15:14 equiv_col
-rw-r--r-- 1 mcc users 7 Apr 27 15:14 instance
-rw-r--r-- 1 mcc users 6 Apr 27 15:14 iscolored
-rw-r--r-- 1 mcc users 42M Apr 27 15:14 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1589953035262

[2020-05-20 05:37:17] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2020-05-20 05:37:17] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-20 05:37:19] [INFO ] Load time of PNML (sax parser for PT used): 1468 ms
[2020-05-20 05:37:19] [INFO ] Transformed 50000 places.
[2020-05-20 05:37:19] [INFO ] Transformed 50000 transitions.
[2020-05-20 05:37:19] [INFO ] Parsed PT model containing 50000 places and 50000 transitions in 1813 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 212 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 28 ms.150548KB memory used
Starting structural reductions, iteration 0 : 50000/50000 places, 50000/50000 transitions.
Performed 10000 Post agglomeration using F-continuation condition.Transition count delta: 10000
Deduced a syphon composed of 10000 places in 23 ms
Reduce places removed 10000 places and 0 transitions.
Iterating global reduction 0 with 20000 rules applied. Total rules applied 20000 place count 40000 transition count 40000
Applied a total of 20000 rules in 10809 ms. Remains 40000 /50000 variables (removed 10000) and now considering 40000/50000 (removed 10000) transitions.
Finished structural reductions, in 1 iterations. Remains : 40000/50000 places, 40000/50000 transitions.
Interrupted Parikh directed walk after 9474 steps, including 0 resets, run timeout after 30002 ms. (steps per millisecond=0 )
// Phase 1: matrix 40000 rows 40000 cols
[2020-05-20 05:38:02] [INFO ] Computed 20000 place invariants in 1908 ms
[2020-05-20 05:38:12] [INFO ] [Real]Absence check using 20000 positive place invariants in 3329 ms returned sat
[2020-05-20 05:38:12] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-20 05:38:19] [INFO ] [Real]Absence check using state equation in 7021 ms returned sat
[2020-05-20 05:40:22] [WARNING] SMT solver failed with error :java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Failed to assert expression: java.io.IOException: Broken pipe (=> s3956 s36213)") while checking Deadlocks.
Interrupted Parikh directed walk after 20001 steps, including 0 resets, run timeout after 73580 ms. (steps per millisecond=0 )
Interrupted Parikh directed walk after 9771 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=0 )
Interrupted Parikh directed walk after 20001 steps, including 0 resets, run timeout after 70491 ms. (steps per millisecond=0 )
Interrupted Parikh directed walk after 9709 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=0 )
[2020-05-20 05:43:49] [INFO ] Flatten gal took : 2162 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
[2020-05-20 05:43:53] [INFO ] Applying decomposition
[2020-05-20 05:43:55] [INFO ] Input system was already deterministic with 50000 transitions.
[2020-05-20 05:43:55] [INFO ] Too many transitions (50000) to apply POR reductions. Disabling POR matrices.
[2020-05-20 05:43:57] [INFO ] Flatten gal took : 4837 ms
[2020-05-20 05:43:59] [INFO ] Built C files in 8382ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph13750530605212430849.txt, -o, /tmp/graph13750530605212430849.bin, -w, /tmp/graph13750530605212430849.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph13750530605212430849.bin, -l, -1, -v, -w, /tmp/graph13750530605212430849.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-20 05:44:04] [INFO ] Decomposing Gal with order
[2020-05-20 05:45:20] [INFO ] Rewriting arrays to variables to allow decomposition.
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:80)
at java.base/java.lang.Thread.run(Thread.java:834)
[2020-05-20 06:02:07] [INFO ] Removed a total of 9894 redundant transitions.
[2020-05-20 06:02:09] [INFO ] Flatten gal took : 3389 ms
[2020-05-20 06:02:11] [INFO ] Fuse similar labels procedure discarded/fused a total of 33362 labels/synchronizations in 1206 ms.
[2020-05-20 06:02:11] [INFO ] Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 521 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
ITS-tools command line returned an error code 137
[2020-05-20 06:02:21] [INFO ] Flatten gal took : 2051 ms
[2020-05-20 06:02:22] [INFO ] Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 410 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK --gen-order FOLLOW
ITS-tools command line returned an error code 137
[2020-05-20 06:02:28] [INFO ] Flatten gal took : 1792 ms
[2020-05-20 06:02:33] [INFO ] Input system was already deterministic with 50000 transitions.
[2020-05-20 06:02:33] [INFO ] Transformed 50000 places.
[2020-05-20 06:02:34] [INFO ] Transformed 50000 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
java.lang.NullPointerException
at fr.lip6.move.gal.application.Application.computeOrderWithGreatSPN(Application.java:1228)
at fr.lip6.move.gal.application.Application.runMultiITS(Application.java:1176)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:523)
at fr.lip6.move.gal.application.Application.start(Application.java:154)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:43)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:137)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:107)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:660)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:597)
at org.eclipse.equinox.launcher.Main.run(Main.java:1468)
at org.eclipse.equinox.launcher.Main.main(Main.java:1441)
[2020-05-20 06:02:37] [INFO ] Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 151 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
ITS-tools command line returned an error code 137

BK_STOP 1589954560018

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 1800 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Philosophers-PT-010000"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Philosophers-PT-010000, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r132-tajo-158961400300116"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Philosophers-PT-010000.tgz
mv Philosophers-PT-010000 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;