Execution Chart

Sorry, for this execution, no execution chart could be reported.

Trace from the execution

Formatting '/local/x2003239/mcc2020-input.r111-csrt-158961258200801.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2020-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
....................................................................................................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is PhaseVariation-PT-D20CS010, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r111-csrt-158961258200801
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 13M
-rw-r--r-- 1 mcc users 4.7K Apr 12 00:57 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Apr 12 00:57 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.0K Apr 11 00:01 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 11 00:01 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:37 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K Mar 24 05:37 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.9K Apr 14 12:44 LTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Apr 28 14:01 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K Apr 14 12:44 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 28 14:01 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Apr 10 08:30 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Apr 10 08:30 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.9K Apr 9 13:08 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K Apr 9 13:08 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K Apr 10 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K Apr 10 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 equiv_col
-rw-r--r-- 1 mcc users 9 Mar 24 05:37 instance
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 iscolored
-rw-r--r-- 1 mcc users 13M Mar 24 05:37 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PhaseVariation-PT-D20CS010-00
FORMULA_NAME PhaseVariation-PT-D20CS010-01
FORMULA_NAME PhaseVariation-PT-D20CS010-02
FORMULA_NAME PhaseVariation-PT-D20CS010-03
FORMULA_NAME PhaseVariation-PT-D20CS010-04
FORMULA_NAME PhaseVariation-PT-D20CS010-05
FORMULA_NAME PhaseVariation-PT-D20CS010-06
FORMULA_NAME PhaseVariation-PT-D20CS010-07
FORMULA_NAME PhaseVariation-PT-D20CS010-08
FORMULA_NAME PhaseVariation-PT-D20CS010-09
FORMULA_NAME PhaseVariation-PT-D20CS010-10
FORMULA_NAME PhaseVariation-PT-D20CS010-11
FORMULA_NAME PhaseVariation-PT-D20CS010-12
FORMULA_NAME PhaseVariation-PT-D20CS010-13
FORMULA_NAME PhaseVariation-PT-D20CS010-14
FORMULA_NAME PhaseVariation-PT-D20CS010-15

=== Now, execution of the tool begins

BK_START 1590033701981

[2020-05-21 04:01:44] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-21 04:01:44] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-21 04:01:45] [INFO ] Load time of PNML (sax parser for PT used): 676 ms
[2020-05-21 04:01:45] [INFO ] Transformed 1202 places.
[2020-05-21 04:01:45] [INFO ] Transformed 13457 transitions.
[2020-05-21 04:01:45] [INFO ] Parsed PT model containing 1202 places and 13457 transitions in 852 ms.
Deduced a syphon composed of 2 places in 51 ms
Reduce places removed 2 places and 52 transitions.
Parsed 16 properties from file /home/mcc/execution/LTLCardinality.xml in 208 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 100000 steps, including 645 resets, run finished after 4800 ms. (steps per millisecond=20 ) properties seen :[1, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 0, 1, 0, 1, 0, 1, 1, 0, 1, 0, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 1, 0, 1, 0, 0, 1]
[2020-05-21 04:01:50] [INFO ] Flow matrix only has 799 transitions (discarded 12606 similar events)
// Phase 1: matrix 799 rows 1200 cols
[2020-05-21 04:01:50] [INFO ] Computed 401 place invariants in 48 ms
[2020-05-21 04:01:50] [INFO ] [Real]Absence check using 401 positive place invariants in 181 ms returned unsat
[2020-05-21 04:01:51] [INFO ] [Real]Absence check using 401 positive place invariants in 275 ms returned unsat
[2020-05-21 04:01:51] [INFO ] [Real]Absence check using 401 positive place invariants in 234 ms returned unsat
[2020-05-21 04:01:52] [INFO ] [Real]Absence check using 401 positive place invariants in 316 ms returned unsat
[2020-05-21 04:01:52] [INFO ] [Real]Absence check using 401 positive place invariants in 183 ms returned unsat
[2020-05-21 04:01:52] [INFO ] [Real]Absence check using 401 positive place invariants in 83 ms returned unsat
[2020-05-21 04:01:53] [INFO ] [Real]Absence check using 401 positive place invariants in 171 ms returned unsat
[2020-05-21 04:01:53] [INFO ] [Real]Absence check using 401 positive place invariants in 338 ms returned unsat
[2020-05-21 04:01:53] [INFO ] [Real]Absence check using 401 positive place invariants in 112 ms returned unsat
[2020-05-21 04:01:54] [INFO ] [Real]Absence check using 401 positive place invariants in 287 ms returned unsat
[2020-05-21 04:01:54] [INFO ] [Real]Absence check using 401 positive place invariants in 138 ms returned unsat
[2020-05-21 04:01:54] [INFO ] [Real]Absence check using 401 positive place invariants in 155 ms returned unsat
[2020-05-21 04:01:55] [INFO ] [Real]Absence check using 401 positive place invariants in 264 ms returned unsat
[2020-05-21 04:01:55] [INFO ] [Real]Absence check using 401 positive place invariants in 10 ms returned unsat
[2020-05-21 04:01:55] [INFO ] [Real]Absence check using 401 positive place invariants in 126 ms returned unsat
[2020-05-21 04:01:55] [INFO ] [Real]Absence check using 401 positive place invariants in 312 ms returned unsat
[2020-05-21 04:01:56] [INFO ] [Real]Absence check using 401 positive place invariants in 157 ms returned unsat
[2020-05-21 04:01:56] [INFO ] [Real]Absence check using 401 positive place invariants in 146 ms returned unsat
[2020-05-21 04:01:56] [INFO ] [Real]Absence check using 401 positive place invariants in 102 ms returned unsat
[2020-05-21 04:01:56] [INFO ] [Real]Absence check using 401 positive place invariants in 39 ms returned unsat
[2020-05-21 04:01:57] [INFO ] [Real]Absence check using 401 positive place invariants in 243 ms returned unsat
[2020-05-21 04:01:57] [INFO ] [Real]Absence check using 401 positive place invariants in 13 ms returned unsat
[2020-05-21 04:01:57] [INFO ] [Real]Absence check using 401 positive place invariants in 244 ms returned unsat
[2020-05-21 04:01:57] [INFO ] [Real]Absence check using 401 positive place invariants in 37 ms returned unsat
Successfully simplified 24 atomic propositions for a total of 26 simplifications.
[2020-05-21 04:01:59] [INFO ] Found a total of 1 fixed domain variables (out of 1200 variables) in GAL type petri
[2020-05-21 04:01:59] [INFO ] Found a total of 1 constant array cells/variables (out of 1200 variables) in type petri
[2020-05-21 04:01:59] [INFO ] cell___10_10__A_,
[2020-05-21 04:01:59] [INFO ] Removed 1 constant variables :cell___10_10__A_=1
[2020-05-21 04:01:59] [INFO ] Simplified 16 expressions due to constant valuations.
[2020-05-21 04:01:59] [INFO ] Initial state reduction rules for CTL removed 9 formulas.
[2020-05-21 04:01:59] [INFO ] Flatten gal took : 1281 ms
FORMULA PhaseVariation-PT-D20CS010-14 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-13 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-09 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-08 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-05 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-03 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-01 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA PhaseVariation-PT-D20CS010-00 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-21 04:02:00] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
[2020-05-21 04:02:00] [INFO ] Flatten gal took : 632 ms
[2020-05-21 04:02:00] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
FORMULA PhaseVariation-PT-D20CS010-07 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
[2020-05-21 04:02:01] [INFO ] Applying decomposition
[2020-05-21 04:02:02] [INFO ] Flatten gal took : 969 ms
[2020-05-21 04:02:02] [INFO ] Input system was already deterministic with 13405 transitions.
[2020-05-21 04:02:02] [INFO ] Too many transitions (13405) to apply POR reductions. Disabling POR matrices.
[2020-05-21 04:02:04] [INFO ] Built C files in 3025ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph8686149433467762787.txt, -o, /tmp/graph8686149433467762787.bin, -w, /tmp/graph8686149433467762787.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph8686149433467762787.bin, -l, -1, -v, -w, /tmp/graph8686149433467762787.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-21 04:02:04] [INFO ] Decomposing Gal with order
[2020-05-21 04:02:04] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-21 04:02:06] [INFO ] Removed a total of 302 redundant transitions.
[2020-05-21 04:02:06] [INFO ] Flatten gal took : 1366 ms
[2020-05-21 04:02:06] [INFO ] Fuse similar labels procedure discarded/fused a total of 296 labels/synchronizations in 66 ms.
[2020-05-21 04:02:07] [INFO ] Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 172 ms
[2020-05-21 04:02:07] [INFO ] Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 6 LTL properties
Checking formula 0 : !(((F(!(F(X("(gu5.cell___2_12__A_<1)")))))U(!(G("(gu0.cell___11_14__A_<=gu0.pool__9_15_)")))))
Formula 0 simplified : !(F!FX"(gu5.cell___2_12__A_<1)" U !G"(gu0.cell___11_14__A_<=gu0.pool__9_15_)")
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:80)
at java.base/java.lang.Thread.run(Thread.java:834)
Detected timeout of ITS tools.
[2020-05-21 04:22:18] [INFO ] Flatten gal took : 3369 ms
[2020-05-21 04:22:19] [INFO ] Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 223 ms
[2020-05-21 04:22:19] [INFO ] Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 12 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 6 LTL properties
Checking formula 0 : !(((F(!(F(X("(cell___2_12__A_<1)")))))U(!(G("(cell___11_14__A_<=pool__9_15_)")))))
Formula 0 simplified : !(F!FX"(cell___2_12__A_<1)" U !G"(cell___11_14__A_<=pool__9_15_)")
Detected timeout of ITS tools.
[2020-05-21 04:42:30] [INFO ] Flatten gal took : 3022 ms
[2020-05-21 04:42:39] [INFO ] Input system was already deterministic with 13405 transitions.
[2020-05-21 04:42:40] [INFO ] Transformed 1199 places.
[2020-05-21 04:42:40] [INFO ] Transformed 13405 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-21 04:42:43] [INFO ] Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 54 ms
[2020-05-21 04:42:43] [INFO ] Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 5 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Read 6 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !(((F(!(F(X("(cell___2_12__A_<1)")))))U(!(G("(cell___11_14__A_<=pool__9_15_)")))))
Formula 0 simplified : !(F!FX"(cell___2_12__A_<1)" U !G"(cell___11_14__A_<=pool__9_15_)")

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PhaseVariation-PT-D20CS010"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is PhaseVariation-PT-D20CS010, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r111-csrt-158961258200801"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/PhaseVariation-PT-D20CS010.tgz
mv PhaseVariation-PT-D20CS010 execution
cd execution
if [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "UpperBounds" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] || [ "LTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;