Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2020-input.r081-smll-158922978000466.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is GPPP-PT-C0010N0000000010, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-smll-158922978000466
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.6K Apr 4 20:03 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K Apr 4 20:03 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.6K Apr 4 09:12 CTLFireability.txt
-rw-r--r-- 1 mcc users 21K Apr 4 09:12 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:37 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K Mar 24 05:37 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.4K Apr 8 14:56 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Apr 28 14:01 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Apr 8 14:56 LTLFireability.txt
-rw-r--r-- 1 mcc users 15K Apr 28 14:01 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.3K Apr 3 21:30 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K Apr 3 21:30 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.7K Apr 3 13:50 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 19K Apr 3 13:50 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Apr 4 01:37 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Apr 4 01:37 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 equiv_col
-rw-r--r-- 1 mcc users 17 Mar 24 05:37 instance
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 iscolored
-rw-r--r-- 1 mcc users 1 Mar 24 05:37 large_marking
-rw-r--r-- 1 mcc users 21K Mar 24 05:37 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0010N0000000010-00
FORMULA_NAME GPPP-PT-C0010N0000000010-01
FORMULA_NAME GPPP-PT-C0010N0000000010-02
FORMULA_NAME GPPP-PT-C0010N0000000010-03
FORMULA_NAME GPPP-PT-C0010N0000000010-04
FORMULA_NAME GPPP-PT-C0010N0000000010-05
FORMULA_NAME GPPP-PT-C0010N0000000010-06
FORMULA_NAME GPPP-PT-C0010N0000000010-07
FORMULA_NAME GPPP-PT-C0010N0000000010-08
FORMULA_NAME GPPP-PT-C0010N0000000010-09
FORMULA_NAME GPPP-PT-C0010N0000000010-10
FORMULA_NAME GPPP-PT-C0010N0000000010-11
FORMULA_NAME GPPP-PT-C0010N0000000010-12
FORMULA_NAME GPPP-PT-C0010N0000000010-13
FORMULA_NAME GPPP-PT-C0010N0000000010-14
FORMULA_NAME GPPP-PT-C0010N0000000010-15

=== Now, execution of the tool begins

BK_START 1589757558023

[2020-05-17 23:19:21] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-17 23:19:21] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-17 23:19:21] [INFO ] Load time of PNML (sax parser for PT used): 57 ms
[2020-05-17 23:19:21] [INFO ] Transformed 33 places.
[2020-05-17 23:19:21] [INFO ] Transformed 22 transitions.
[2020-05-17 23:19:21] [INFO ] Parsed PT model containing 33 places and 22 transitions in 131 ms.
Parsed 16 properties from file /home/mcc/execution/LTLFireability.xml in 27 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 100037 steps, including 238 resets, run finished after 320 ms. (steps per millisecond=312 ) properties seen :[1, 1, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 1, 1, 1]
// Phase 1: matrix 22 rows 33 cols
[2020-05-17 23:19:21] [INFO ] Computed 12 place invariants in 6 ms
[2020-05-17 23:19:21] [INFO ] [Real]Absence check using 6 positive place invariants in 20 ms returned sat
[2020-05-17 23:19:21] [INFO ] [Real]Absence check using 6 positive and 6 generalized place invariants in 4 ms returned unsat
[2020-05-17 23:19:21] [INFO ] [Real]Absence check using 6 positive place invariants in 5 ms returned sat
[2020-05-17 23:19:21] [INFO ] [Real]Absence check using 6 positive and 6 generalized place invariants in 5 ms returned sat
[2020-05-17 23:19:21] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-17 23:19:21] [INFO ] [Real]Absence check using state equation in 42 ms returned sat
[2020-05-17 23:19:21] [INFO ] Solution in real domain found non-integer solution.
[2020-05-17 23:19:21] [INFO ] [Nat]Absence check using 6 positive place invariants in 13 ms returned sat
[2020-05-17 23:19:24] [INFO ] [Nat]Absence check using 6 positive and 6 generalized place invariants in 2834 ms returned sat
[2020-05-17 23:19:24] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-17 23:19:30] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-17 23:19:33] [INFO ] [Nat]Absence check using state equation in 9115 ms returned unknown
[2020-05-17 23:19:33] [INFO ] [Real]Absence check using 6 positive place invariants in 4 ms returned sat
[2020-05-17 23:19:33] [INFO ] [Real]Absence check using 6 positive and 6 generalized place invariants in 4 ms returned sat
[2020-05-17 23:19:33] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-17 23:19:33] [INFO ] [Real]Absence check using state equation in 19 ms returned unsat
[2020-05-17 23:19:33] [INFO ] [Real]Absence check using 6 positive place invariants in 3 ms returned sat
[2020-05-17 23:19:33] [INFO ] [Real]Absence check using 6 positive and 6 generalized place invariants in 2 ms returned unsat
Successfully simplified 3 atomic propositions for a total of 3 simplifications.
[2020-05-17 23:19:34] [INFO ] Initial state reduction rules for CTL removed 4 formulas.
[2020-05-17 23:19:34] [INFO ] Flatten gal took : 54 ms
FORMULA GPPP-PT-C0010N0000000010-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C0010N0000000010-05 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C0010N0000000010-01 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C0010N0000000010-00 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-17 23:19:34] [INFO ] Flatten gal took : 15 ms
Using solver Z3 to compute partial order matrices.
[2020-05-17 23:19:34] [INFO ] Applying decomposition
Built C files in :
/home/mcc/execution
[2020-05-17 23:19:34] [INFO ] Flatten gal took : 33 ms
[2020-05-17 23:19:34] [INFO ] Input system was already deterministic with 22 transitions.
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph6972266830632661832.txt, -o, /tmp/graph6972266830632661832.bin, -w, /tmp/graph6972266830632661832.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph6972266830632661832.bin, -l, -1, -v, -w, /tmp/graph6972266830632661832.weights, -q, 0, -e, 0.001], workingDir=null]
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 22 rows 33 cols
[2020-05-17 23:19:34] [INFO ] Computed 12 place invariants in 4 ms
inv : 2*GSSG + GSH = 20
inv : Ru5P - 53*Xu5P + 1081*R5P + 1043*S7P - 15*GAP + 8*E4P - 30*F6P - 30*FBP - 15*DHAP + b2 - 54*a2 + 15*c2 = 0
inv : NADH - _1_3_BPG - _3PG - _2PG - PEP - Pyr = 0
inv : -Ru5P - Xu5P - R5P - S7P - GAP - E4P - F6P - G6P - 2*FBP - DHAP - _1_3_BPG + ADP + Pyr + 70*start + Lac = 70
inv : NADplus + _1_3_BPG + _3PG + _2PG + PEP + Pyr = 20
inv : NADPplus + NADPH = 20
inv : a1 + a2 = 20
inv : Pi + _1_3_BPG + _3PG + _2PG + PEP + Pyr + 70*start + Lac = 70
inv : 28*Ru5P + 21*Xu5P + 168*R5P + 175*S7P + 14*GAP + 21*E4P + 28*F6P + 28*G6P + 28*FBP + 14*DHAP + 16*_1_3_BPG + 16*_3PG + 16*_2PG + 16*PEP + 16*Pyr + 1120*start + 16*Lac + 28*Gluc - 7*a2 + 2*c2 = 1120
inv : c1 + c2 = 70
inv : -Ru5P + 53*Xu5P - 1081*R5P - 1043*S7P + 15*GAP - 8*E4P + 30*F6P + 30*FBP + 15*DHAP + b1 + 54*a2 - 15*c2 = 30
inv : ATP + Ru5P + Xu5P + R5P + S7P + GAP + E4P + F6P + G6P + 2*FBP + DHAP + _1_3_BPG - Pyr - Lac = 40
Total of 12 invariants.
[2020-05-17 23:19:34] [INFO ] Computed 12 place invariants in 6 ms
[2020-05-17 23:19:34] [INFO ] Decomposing Gal with order
[2020-05-17 23:19:34] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-17 23:19:34] [INFO ] Removed a total of 2 redundant transitions.
[2020-05-17 23:19:34] [INFO ] Flatten gal took : 53 ms
[2020-05-17 23:19:34] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 2 ms.
[2020-05-17 23:19:34] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 5 ms
[2020-05-17 23:19:34] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 3 ms
[2020-05-17 23:19:34] [INFO ] Proved 33 variables to be positive in 158 ms
[2020-05-17 23:19:34] [INFO ] Computing symmetric may disable matrix : 22 transitions.
[2020-05-17 23:19:34] [INFO ] Computation of disable matrix completed :0/22 took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-17 23:19:34] [INFO ] Computation of Complete disable matrix. took 3 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-17 23:19:34] [INFO ] Computing symmetric may enable matrix : 22 transitions.
[2020-05-17 23:19:34] [INFO ] Computation of Complete enable matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 12 LTL properties
Checking formula 0 : !((G(X(F(X("((i0.u1.NADPH>=1)&&(i0.u2.GSSG>=1))"))))))
Formula 0 simplified : !GXFX"((i0.u1.NADPH>=1)&&(i0.u2.GSSG>=1))"
built 7 ordering constraints for composite.
built 10 ordering constraints for composite.
built 7 ordering constraints for composite.
built 2 ordering constraints for composite.
[2020-05-17 23:19:35] [INFO ] Computing symmetric co enabling matrix : 22 transitions.
[2020-05-17 23:19:36] [INFO ] Computation of Finished co-enabling matrix. took 1037 ms. Total solver calls (SAT/UNSAT): 192(159/33)
[2020-05-17 23:19:36] [INFO ] Computing Do-Not-Accords matrix : 22 transitions.
[2020-05-17 23:19:37] [INFO ] Computation of Completed DNA matrix. took 939 ms. Total solver calls (SAT/UNSAT): 43(0/43)
[2020-05-17 23:19:37] [INFO ] Built C files in 3479ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Compilation finished in 842 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 44 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](X(<>(X((LTLAP0==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc: error while loading shared libraries: libltdl.so.7: cannot open shared object file: No such file or directory
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](X(<>(X((LTLAP0==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](X(<>(X((LTLAP0==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:170)
at fr.lip6.move.gal.application.LTSminRunner.access$10(LTSminRunner.java:124)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:93)
at java.base/java.lang.Thread.run(Thread.java:834)
Reverse transition relation is NOT exact ! Due to transitions Transketolase2, i0.u2.Glutathione_oxidation, i1.u3.Aldolase, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :1/18/3/22
Computing Next relation with stutter on 1 deadlock states
Detected timeout of ITS tools.
[2020-05-17 23:39:38] [INFO ] Flatten gal took : 11 ms
[2020-05-17 23:39:38] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 1 ms
[2020-05-17 23:39:38] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 12 LTL properties
Checking formula 0 : !((G(X(F(X("((NADPH>=1)&&(GSSG>=1))"))))))
Formula 0 simplified : !GXFX"((NADPH>=1)&&(GSSG>=1))"
Detected timeout of ITS tools.
[2020-05-17 23:59:45] [INFO ] Flatten gal took : 780 ms
[2020-05-17 23:59:45] [INFO ] Input system was already deterministic with 22 transitions.
[2020-05-17 23:59:45] [INFO ] Transformed 33 places.
[2020-05-17 23:59:45] [INFO ] Transformed 22 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-17 23:59:45] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 5 ms
[2020-05-17 23:59:45] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 15 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Read 12 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !((G(X(F(X("((NADPH>=1)&&(GSSG>=1))"))))))
Formula 0 simplified : !GXFX"((NADPH>=1)&&(GSSG>=1))"
Reverse transition relation is NOT exact ! Due to transitions t3, t8, t13, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :1/18/3/22
Computing Next relation with stutter on 1 deadlock states
276 unique states visited
276 strongly connected components in search stack
277 transitions explored
276 items max in DFS search stack
2604 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,26.067,546180,1,0,325,2.89187e+06,73,574,1601,3.01455e+06,1702
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA GPPP-PT-C0010N0000000010-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !((X(X(X(!(X(G(("((ATP>=1)&&(Gluc>=1))")U(!(G("((((((Pi>=1)&&(NADplus>=1))&&(GAP>=1))&&(c2>=1))&&(ATP>=1))&&(Gluc>=1))")))))))))))
Formula 1 simplified : !XXX!XG("((ATP>=1)&&(Gluc>=1))" U !G"((((((Pi>=1)&&(NADplus>=1))&&(GAP>=1))&&(c2>=1))&&(ATP>=1))&&(Gluc>=1))")
Computing Next relation with stutter on 1 deadlock states
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
47465 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,500.721,3059700,1,0,1142,1.78259e+07,20,1049,1017,2.13785e+07,2747
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA GPPP-PT-C0010N0000000010-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !(((G("((Xu5P>=1)&&(E4P>=1))"))U(X("(((NADPplus>=2)&&(G6P>=1))&&(b2>=1))"))))
Formula 2 simplified : !(G"((Xu5P>=1)&&(E4P>=1))" U X"(((NADPplus>=2)&&(G6P>=1))&&(b2>=1))")
Computing Next relation with stutter on 1 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
386 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,504.589,3060212,1,0,1147,1.78259e+07,35,1596,1242,2.13785e+07,3587
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA GPPP-PT-C0010N0000000010-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 3 : !((F("(_2PG>=1)")))
Formula 3 simplified : !F"(_2PG>=1)"
Computing Next relation with stutter on 1 deadlock states
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
13284 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,637.428,3370148,1,0,1799,2.06171e+07,17,2041,946,2.18947e+07,1793
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA GPPP-PT-C0010N0000000010-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 4 : !((X((X("((NADH>=1)&&(Pyr>=1))"))||(F(!(F("((_1_3_BPG>=1)&&(ADP>=1))")))))))
Formula 4 simplified : !X(X"((NADH>=1)&&(Pyr>=1))" | F!F"((_1_3_BPG>=1)&&(ADP>=1))")
Computing Next relation with stutter on 1 deadlock states
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
6635 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,703.785,3370208,1,0,4190,2.06171e+07,34,3215,1197,2.18947e+07,9063
an accepting run exists (use option '-e' to print it)
Formula 4 is FALSE accepting run found.
FORMULA GPPP-PT-C0010N0000000010-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 5 : !((X(G("((_1_3_BPG<1)||(ADP<1))"))))
Formula 5 simplified : !XG"((_1_3_BPG<1)||(ADP<1))"
Computing Next relation with stutter on 1 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
162 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,705.403,3370208,1,0,5006,2.06171e+07,41,4304,1225,2.18947e+07,11266
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA GPPP-PT-C0010N0000000010-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 6 : !(((X(X((G(X((G("(_2PG>=1)"))&&("(DHAP>=1)"))))||("(GSH>=2)"))))U("(_2PG>=1)")))
Formula 6 simplified : !(XX("(GSH>=2)" | GX("(DHAP>=1)" & G"(_2PG>=1)")) U "(_2PG>=1)")
Computing Next relation with stutter on 1 deadlock states
273 unique states visited
273 strongly connected components in search stack
273 transitions explored
273 items max in DFS search stack
4121 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,746.618,3619268,1,0,5799,2.24749e+07,42,5162,1225,2.35977e+07,13032
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA GPPP-PT-C0010N0000000010-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 7 : !((((F(G("(((NADPplus>=2)&&(G6P>=1))&&(b2>=1))")))&&(X("(_3PG>=1)")))&&(F("((NADPH>=1)&&(GSSG>=1))"))))
Formula 7 simplified : !(FG"(((NADPplus>=2)&&(G6P>=1))&&(b2>=1))" & X"(_3PG>=1)" & F"((NADPH>=1)&&(GSSG>=1))")
Computing Next relation with stutter on 1 deadlock states

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0010N0000000010"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is GPPP-PT-C0010N0000000010, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-smll-158922978000466"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0010N0000000010.tgz
mv GPPP-PT-C0010N0000000010 execution
cd execution
if [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "UpperBounds" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] || [ "LTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;