Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2020-input.r066-tajo-158922814500564.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Diffusion2D-PT-D50N050, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r066-tajo-158922814500564
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 4.1K Mar 31 06:36 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K Mar 31 06:36 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Mar 29 22:57 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Mar 29 22:57 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:37 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K Mar 24 05:37 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Apr 8 14:49 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Apr 28 14:00 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Apr 8 14:49 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 28 14:00 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.5K Mar 28 14:32 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Mar 28 14:32 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.1K Mar 27 07:33 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K Mar 27 07:33 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Mar 28 14:50 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Mar 28 14:50 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 equiv_col
-rw-r--r-- 1 mcc users 8 Mar 24 05:37 instance
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 iscolored
-rw-r--r-- 1 mcc users 7.3M Mar 24 05:37 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-00
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-01
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-02
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-03
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-04
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-05
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-06
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-07
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-08
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-09
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-10
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-11
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-12
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-13
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-14
FORMULA_NAME Diffusion2D-PT-D50N050-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1590127209427

[2020-05-22 06:00:10] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-22 06:00:10] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-22 06:00:11] [INFO ] Load time of PNML (sax parser for PT used): 337 ms
[2020-05-22 06:00:11] [INFO ] Transformed 2500 places.
[2020-05-22 06:00:11] [INFO ] Transformed 19404 transitions.
[2020-05-22 06:00:11] [INFO ] Parsed PT model containing 2500 places and 19404 transitions in 448 ms.
Parsed 16 properties from file /home/mcc/execution/CTLFireability.xml in 186 ms.
Incomplete random walk after 100024 steps, including 0 resets, run finished after 251 ms. (steps per millisecond=398 ) properties seen :[0, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 1, 0, 0, 1, 1]
// Phase 1: matrix 19404 rows 2500 cols
[2020-05-22 06:00:12] [INFO ] Computed 1 place invariants in 174 ms
[2020-05-22 06:00:12] [INFO ] [Real]Absence check using 1 positive place invariants in 47 ms returned sat
[2020-05-22 06:00:12] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:00:32] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:00:32] [INFO ] [Real]Absence check using state equation in 19409 ms returned (error "Failed to check-sat")
[2020-05-22 06:00:32] [INFO ] [Real]Absence check using 1 positive place invariants in 43 ms returned sat
[2020-05-22 06:00:32] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:00:52] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:00:52] [INFO ] [Real]Absence check using state equation in 19703 ms returned (error "Failed to check-sat")
[2020-05-22 06:00:52] [INFO ] [Real]Absence check using 1 positive place invariants in 43 ms returned sat
[2020-05-22 06:00:52] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:01:12] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:01:12] [INFO ] [Real]Absence check using state equation in 19743 ms returned (error "Failed to check-sat")
[2020-05-22 06:01:12] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:01:12] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:01:32] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:01:32] [INFO ] [Real]Absence check using state equation in 19786 ms returned unknown
[2020-05-22 06:01:32] [INFO ] [Real]Absence check using 1 positive place invariants in 29 ms returned sat
[2020-05-22 06:01:32] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:01:52] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:01:52] [INFO ] [Real]Absence check using state equation in 19836 ms returned (error "Failed to check-sat")
[2020-05-22 06:01:52] [INFO ] [Real]Absence check using 1 positive place invariants in 42 ms returned sat
[2020-05-22 06:01:52] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:02:12] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:02:12] [INFO ] [Real]Absence check using state equation in 19711 ms returned unknown
[2020-05-22 06:02:12] [INFO ] [Real]Absence check using 1 positive place invariants in 41 ms returned sat
[2020-05-22 06:02:12] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:02:32] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:02:32] [INFO ] [Real]Absence check using state equation in 19755 ms returned unknown
[2020-05-22 06:02:32] [INFO ] [Real]Absence check using 1 positive place invariants in 41 ms returned sat
[2020-05-22 06:02:32] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:02:52] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:02:52] [INFO ] [Real]Absence check using state equation in 19776 ms returned (error "Failed to check-sat")
[2020-05-22 06:02:52] [INFO ] [Real]Absence check using 1 positive place invariants in 31 ms returned sat
[2020-05-22 06:02:52] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:03:12] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:03:12] [INFO ] [Real]Absence check using state equation in 19799 ms returned unknown
[2020-05-22 06:03:13] [INFO ] Flatten gal took : 583 ms
[2020-05-22 06:03:13] [INFO ] Flatten gal took : 347 ms
[2020-05-22 06:03:13] [INFO ] Applying decomposition
[2020-05-22 06:03:14] [INFO ] Flatten gal took : 353 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph9278837231887878051.txt, -o, /tmp/graph9278837231887878051.bin, -w, /tmp/graph9278837231887878051.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph9278837231887878051.bin, -l, -1, -v, -w, /tmp/graph9278837231887878051.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-22 06:03:15] [INFO ] Decomposing Gal with order
[2020-05-22 06:03:15] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-22 06:03:16] [INFO ] Removed a total of 13738 redundant transitions.
[2020-05-22 06:03:16] [INFO ] Flatten gal took : 793 ms
[2020-05-22 06:03:16] [INFO ] Fuse similar labels procedure discarded/fused a total of 56 labels/synchronizations in 160 ms.
[2020-05-22 06:03:16] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 179 ms
[2020-05-22 06:03:16] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 42 ordering constraints for composite.
built 150 ordering constraints for composite.
built 91 ordering constraints for composite.
built 142 ordering constraints for composite.
built 105 ordering constraints for composite.
built 123 ordering constraints for composite.
built 123 ordering constraints for composite.
built 86 ordering constraints for composite.
built 119 ordering constraints for composite.
built 55 ordering constraints for composite.
built 49 ordering constraints for composite.
built 45 ordering constraints for composite.
built 168 ordering constraints for composite.
built 73 ordering constraints for composite.
built 110 ordering constraints for composite.
built 194 ordering constraints for composite.
built 153 ordering constraints for composite.
built 157 ordering constraints for composite.
built 92 ordering constraints for composite.
built 116 ordering constraints for composite.
built 144 ordering constraints for composite.
built 140 ordering constraints for composite.
built 85 ordering constraints for composite.
built 100 ordering constraints for composite.
built 110 ordering constraints for composite.
built 81 ordering constraints for composite.
Detected timeout of ITS tools.
[2020-05-22 06:24:17] [INFO ] Flatten gal took : 463 ms
[2020-05-22 06:24:17] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 56 ms
[2020-05-22 06:24:17] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.22026e+105,716.608,4902156,2,127451,5,2.40748e+07,6,0,29407,2.35203e+07,0


Converting to forward existential form...Done !
Detected timeout of ITS tools.
[2020-05-22 06:45:18] [INFO ] Flatten gal took : 529 ms
[2020-05-22 06:45:19] [INFO ] Input system was already deterministic with 19404 transitions.
[2020-05-22 06:45:19] [INFO ] Transformed 2500 places.
[2020-05-22 06:45:19] [INFO ] Transformed 19404 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-22 06:45:21] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 48 ms
[2020-05-22 06:45:21] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N050"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D50N050, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r066-tajo-158922814500564"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N050.tgz
mv Diffusion2D-PT-D50N050 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;