Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2020-input.r006-smll-158897515900315.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-01, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r006-smll-158897515900315
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 232K
-rw-r--r-- 1 mcc users 3.6K Apr 28 14:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K Apr 28 14:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Apr 28 14:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 22K Apr 28 14:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Apr 28 14:22 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Apr 28 14:22 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.4K Apr 28 14:22 LTLCardinality.txt
-rw-r--r-- 1 mcc users 28K Apr 28 14:22 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K Apr 28 14:22 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 28 14:22 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.6K Apr 28 14:22 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K Apr 28 14:22 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Apr 28 14:22 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 28 14:22 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Apr 28 14:22 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Apr 28 14:22 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Apr 28 14:22 equiv_col
-rw-r--r-- 1 mcc users 3 Apr 28 14:22 instance
-rw-r--r-- 1 mcc users 6 Apr 28 14:22 iscolored
-rw-r--r-- 1 mcc users 34K Apr 28 14:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1589480389442

[2020-05-14 18:19:52] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-14 18:19:52] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-14 18:19:52] [INFO ] Load time of PNML (sax parser for PT used): 83 ms
[2020-05-14 18:19:52] [INFO ] Transformed 39 places.
[2020-05-14 18:19:52] [INFO ] Transformed 64 transitions.
[2020-05-14 18:19:52] [INFO ] Found NUPN structural information;
[2020-05-14 18:19:52] [INFO ] Parsed PT model containing 39 places and 64 transitions in 170 ms.
Parsed 16 properties from file /home/mcc/execution/CTLCardinality.xml in 30 ms.
Incomplete random walk after 100000 steps, including 0 resets, run finished after 436 ms. (steps per millisecond=229 ) properties seen :[0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
// Phase 1: matrix 64 rows 39 cols
[2020-05-14 18:19:53] [INFO ] Computed 8 place invariants in 6 ms
[2020-05-14 18:19:53] [INFO ] [Real]Absence check using 8 positive place invariants in 19 ms returned unsat
[2020-05-14 18:19:53] [INFO ] [Real]Absence check using 8 positive place invariants in 7 ms returned sat
[2020-05-14 18:19:53] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-14 18:19:53] [INFO ] [Real]Absence check using state equation in 46 ms returned sat
[2020-05-14 18:19:53] [INFO ] Solution in real domain found non-integer solution.
[2020-05-14 18:19:53] [INFO ] [Nat]Absence check using 8 positive place invariants in 15 ms returned sat
[2020-05-14 18:19:53] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-14 18:19:53] [INFO ] [Nat]Absence check using state equation in 41 ms returned sat
[2020-05-14 18:19:53] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 11 ms.
[2020-05-14 18:19:53] [INFO ] Added : 58 causal constraints over 13 iterations in 182 ms. Result :sat
Successfully simplified 1 atomic propositions for a total of 1 simplifications.
[2020-05-14 18:19:54] [INFO ] Initial state reduction rules for CTL removed 13 formulas.
[2020-05-14 18:19:54] [INFO ] Flatten gal took : 67 ms
[2020-05-14 18:19:54] [INFO ] Initial state reduction rules for CTL removed 13 formulas.
[2020-05-14 18:19:54] [INFO ] Flatten gal took : 23 ms
FORMULA Angiogenesis-PT-01-CTLCardinality-14 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-13 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-12 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-11 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-08 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-07 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-06 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-05 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-04 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-02 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-01 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-CTLCardinality-00 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-14 18:19:54] [INFO ] Applying decomposition
[2020-05-14 18:19:54] [INFO ] Flatten gal took : 16 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph11853486510285224972.txt, -o, /tmp/graph11853486510285224972.bin, -w, /tmp/graph11853486510285224972.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph11853486510285224972.bin, -l, -1, -v, -w, /tmp/graph11853486510285224972.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-14 18:19:54] [INFO ] Decomposing Gal with order
[2020-05-14 18:19:54] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-14 18:19:54] [INFO ] Removed a total of 39 redundant transitions.
[2020-05-14 18:19:54] [INFO ] Flatten gal took : 46 ms
[2020-05-14 18:19:54] [INFO ] Fuse similar labels procedure discarded/fused a total of 7 labels/synchronizations in 5 ms.
[2020-05-14 18:19:54] [INFO ] Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 5 ms
[2020-05-14 18:19:54] [INFO ] Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 3 CTL formulae.
built 13 ordering constraints for composite.
built 9 ordering constraints for composite.
built 7 ordering constraints for composite.
built 13 ordering constraints for composite.
built 7 ordering constraints for composite.
built 16 ordering constraints for composite.
built 11 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,110,0.028094,4820,101,20,898,125,207,878,41,279,0


Converting to forward existential form...Done !
original formula: (EG(AX((i3.u10.KdStarPgStar==1))) * EF(((i2.u4.KdStarGStarPgP3!=0)&&(i1.u0.AktStar!=1))))
=> equivalent forward existential formula: [(FwdU((Init * EG(!(EX(!((i3.u10.KdStarPgStar==1)))))),TRUE) * ((i2.u4.KdStarGStarPgP3!=0)&&(i1.u0.AktStar!=1)))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions i0.u2.k2, i5.k55, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :12/46/2/60
Fast SCC detection found an SCC at level 1
Fast SCC detection found a local SCC at level 1
Fast SCC detection found an SCC at level 2
Fast SCC detection found an SCC at level 3
Fast SCC detection found an SCC at level 4
Fast SCC detection found an SCC at level 5
Using saturation style SCC detection
Using saturation style SCC detection
Using saturation style SCC detection
Fast SCC detection found an SCC at level 1
Fast SCC detection found a local SCC at level 3
Fast SCC detection found an SCC at level 4
Fast SCC detection found an SCC at level 5
(forward)formula 0,0,0.041996,5260,1,0,1050,131,753,1425,200,279,4578
FORMULA Angiogenesis-PT-01-CTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !

***************************************

original formula: EX((AF(((i2.u4.GStarPgP3==0)||(i2.u9.KdStarGStarPgStarP3==1))) * EG(((i3.u1.DAG==0)||(i3.u1.DAGE==1)))))
=> equivalent forward existential formula: [FwdG((EY(Init) * !(EG(!(((i2.u4.GStarPgP3==0)||(i2.u9.KdStarGStarPgStarP3==1)))))),((i3.u1.DAG==0)||(i3.u1.DAGE==1)))] != FALSE
(forward)formula 1,1,0.054976,5524,1,0,1596,167,989,2135,215,412,7640
FORMULA Angiogenesis-PT-01-CTLCardinality-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EX(((i4.u5.KdStarGStarP3==0)||(i3.u10.KdStarPgStarP2==1)))
=> equivalent forward existential formula: [(EY(Init) * ((i4.u5.KdStarGStarP3==0)||(i3.u10.KdStarPgStarP2==1)))] != FALSE
(forward)formula 2,1,0.055696,5788,1,0,1603,167,996,2144,217,412,7686
FORMULA Angiogenesis-PT-01-CTLCardinality-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************


BK_STOP 1589480395690

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r006-smll-158897515900315"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
if [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "UpperBounds" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] || [ "CTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;