Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fko/mcc2020-input.r227-oct2-159033546800506.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fko/mcc2020-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
..................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is ViralEpidemic-PT-S03D1C1A06, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r227-oct2-159033546800506
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 5.8M
-rw-r--r-- 1 mcc users 4.3K May 14 04:38 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 14 04:38 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K May 13 22:37 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 13 22:37 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 14 10:07 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 14 10:07 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 14 10:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 14 10:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 12 20:42 NewModel
-rw-r--r-- 1 mcc users 4.5K May 13 15:42 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 13 15:42 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.0K May 13 11:26 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 13 11:26 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 13 16:53 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 13 16:53 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 12 20:42 equiv_col
-rw-r--r-- 1 mcc users 11 May 12 20:42 instance
-rw-r--r-- 1 mcc users 6 May 12 20:42 iscolored
-rw-r--r-- 1 mcc users 5.6M May 12 20:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-00
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-01
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-02
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-03
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-04
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-05
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-06
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-07
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-08
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-09
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-10
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-11
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-12
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-13
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-14
FORMULA_NAME ViralEpidemic-PT-S03D1C1A06-15

=== Now, execution of the tool begins

BK_START 1590503226882

[2020-05-26 14:27:08] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-26 14:27:08] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-26 14:27:08] [INFO ] Load time of PNML (sax parser for PT used): 280 ms
[2020-05-26 14:27:08] [INFO ] Transformed 5466 places.
[2020-05-26 14:27:08] [INFO ] Transformed 7651 transitions.
[2020-05-26 14:27:08] [INFO ] Parsed PT model containing 5466 places and 7651 transitions in 340 ms.
Parsed 16 properties from file /home/mcc/execution/LTLFireability.xml in 39 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 100000 steps, including 1435 resets, run finished after 4418 ms. (steps per millisecond=22 ) properties seen :[0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
// Phase 1: matrix 7651 rows 5466 cols
[2020-05-26 14:27:14] [INFO ] Invariants computation overflowed in 1005 ms
[2020-05-26 14:27:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 14:27:34] [INFO ] [Real]Absence check using state equation in 19540 ms returned (error "Solver has unexpectedly terminated")
[2020-05-26 14:27:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-26 14:27:54] [INFO ] [Real]Absence check using state equation in 19203 ms returned (error "Failed to check-sat")
[2020-05-26 14:27:55] [INFO ] Initial state reduction rules for CTL removed 3 formulas.
[2020-05-26 14:27:55] [INFO ] Flatten gal took : 640 ms
FORMULA ViralEpidemic-PT-S03D1C1A06-15 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA ViralEpidemic-PT-S03D1C1A06-01 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA ViralEpidemic-PT-S03D1C1A06-00 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-26 14:27:55] [INFO ] Flatten gal took : 572 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
[2020-05-26 14:27:56] [INFO ] Applying decomposition
[2020-05-26 14:27:57] [INFO ] Input system was already deterministic with 7651 transitions.
[2020-05-26 14:27:57] [INFO ] Too many transitions (7651) to apply POR reductions. Disabling POR matrices.
[2020-05-26 14:27:57] [INFO ] Flatten gal took : 805 ms
[2020-05-26 14:27:58] [INFO ] Built C files in 2230ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph8146541537361368034.txt, -o, /tmp/graph8146541537361368034.bin, -w, /tmp/graph8146541537361368034.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph8146541537361368034.bin, -l, -1, -v, -w, /tmp/graph8146541537361368034.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-26 14:27:59] [INFO ] Decomposing Gal with order
[2020-05-26 14:28:00] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-26 14:28:03] [INFO ] Removed a total of 7744 redundant transitions.
[2020-05-26 14:28:04] [INFO ] Flatten gal took : 1290 ms
[2020-05-26 14:28:06] [INFO ] Fuse similar labels procedure discarded/fused a total of 8036 labels/synchronizations in 1492 ms.
[2020-05-26 14:28:06] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 172 ms
[2020-05-26 14:28:06] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 29 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 13 LTL properties
Checking formula 0 : !((X(X(F(((!(F((X("((u1951.cFactor6233221>=1)&&(i1466.i1.u1949.patient2332211>=1))"))&&(G("((u888.cFactor6132332>=1)&&(i652.i2.u889.patient1323323>=1))")))))||("(u2256.dFactor531313<1)"))||("(i1679.i2.u2264.patient313133<1)"))))))
Formula 0 simplified : !XXF("(i1679.i2.u2264.patient313133<1)" | "(u2256.dFactor531313<1)" | !F(X"((u1951.cFactor6233221>=1)&&(i1466.i1.u1949.patient2332211>=1))" & G"((u888.cFactor6132332>=1)&&(i652.i2.u889.patient1323323>=1))"))
built 2338 ordering constraints for composite.
built 19 ordering constraints for composite.
built 11 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 19 ordering constraints for composite.
built 11 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 62 ordering constraints for composite.
built 10 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
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built 11 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
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built 11 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
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built 11 ordering constraints for composite.
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built 9 ordering constraints for composite.
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built 18 ordering constraints for composite.
built 9 ordering constraints for composite.
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built 43 ordering constraints for composite.
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built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
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built 9 ordering constraints for composite.
built 19 ordering constraints for composite.
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built 9 ordering constraints for composite.
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built 9 ordering constraints for composite.
built 18 ordering constraints for composite.
built 11 ordering constraints for composite.
built 9 ordering constraints for composite.
built 9 ordering constraints for composite.
Compilation finished in 148711 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 155 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(X(<>(( ( !( <>(( X((LTLAP0==true)) ) && ( []((LTLAP1==true)) ))) ) || ( (LTLAP2==true)) ) || ( (LTLAP3==true)) ))), --buchi-type=spotba], workingDir=/home/mcc/execution]
/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc: error while loading shared libraries: libltdl.so.7: cannot open shared object file: No such file or directory
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(X(<>(( ( !( <>(( X((LTLAP0==true)) ) && ( []((LTLAP1==true)) ))) ) || ( (LTLAP2==true)) ) || ( (LTLAP3==true)) ))), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(X(<>(( ( !( <>(( X((LTLAP0==true)) ) && ( []((LTLAP1==true)) ))) ) || ( (LTLAP2==true)) ) || ( (LTLAP3==true)) ))), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:170)
at fr.lip6.move.gal.application.LTSminRunner.access$10(LTSminRunner.java:124)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:93)
at java.base/java.lang.Thread.run(Thread.java:834)
Detected timeout of ITS tools.
[2020-05-26 14:48:48] [INFO ] Flatten gal took : 10769 ms
[2020-05-26 14:48:49] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 590 ms
[2020-05-26 14:48:49] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 259 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 13 LTL properties
Checking formula 0 : !((X(X(F(((!(F((X("((cFactor6233221>=1)&&(patient2332211>=1))"))&&(G("((cFactor6132332>=1)&&(patient1323323>=1))")))))||("(dFactor531313<1)"))||("(patient313133<1)"))))))
Formula 0 simplified : !XXF("(dFactor531313<1)" | "(patient313133<1)" | !F(X"((cFactor6233221>=1)&&(patient2332211>=1))" & G"((cFactor6132332>=1)&&(patient1323323>=1))"))
Detected timeout of ITS tools.
[2020-05-26 15:09:12] [INFO ] Flatten gal took : 2665 ms
[2020-05-26 15:09:17] [INFO ] Input system was already deterministic with 7651 transitions.
[2020-05-26 15:09:18] [INFO ] Transformed 5466 places.
[2020-05-26 15:09:18] [INFO ] Transformed 7651 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-26 15:09:21] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 85 ms
[2020-05-26 15:09:21] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 91 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Read 13 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !((X(X(F(((!(F((X("((cFactor6233221>=1)&&(patient2332211>=1))"))&&(G("((cFactor6132332>=1)&&(patient1323323>=1))")))))||("(dFactor531313<1)"))||("(patient313133<1)"))))))
Formula 0 simplified : !XXF("(dFactor531313<1)" | "(patient313133<1)" | !F(X"((cFactor6233221>=1)&&(patient2332211>=1))" & G"((cFactor6132332>=1)&&(patient1323323>=1))"))

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="ViralEpidemic-PT-S03D1C1A06"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is ViralEpidemic-PT-S03D1C1A06, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r227-oct2-159033546800506"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/ViralEpidemic-PT-S03D1C1A06.tgz
mv ViralEpidemic-PT-S03D1C1A06 execution
cd execution
if [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "UpperBounds" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] || [ "LTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;