Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2020-input.r111-csrt-158961257000036.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2020-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
..............................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is MAPK-PT-00160, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r111-csrt-158961257000036
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 220K
-rw-r--r-- 1 mcc users 3.8K Apr 8 13:00 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K Apr 8 13:00 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Apr 7 16:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 7 16:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:37 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 24 05:37 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.7K Apr 14 12:42 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K Apr 28 14:01 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Apr 14 12:42 LTLFireability.txt
-rw-r--r-- 1 mcc users 15K Apr 28 14:01 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Apr 6 19:16 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 21K Apr 6 19:16 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.1K Apr 6 02:42 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 22K Apr 6 02:42 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Apr 6 20:24 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Apr 6 20:24 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 equiv_col
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 instance
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 iscolored
-rw-r--r-- 1 mcc users 25K Mar 24 05:37 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00160-CTLFireability-00
FORMULA_NAME MAPK-PT-00160-CTLFireability-01
FORMULA_NAME MAPK-PT-00160-CTLFireability-02
FORMULA_NAME MAPK-PT-00160-CTLFireability-03
FORMULA_NAME MAPK-PT-00160-CTLFireability-04
FORMULA_NAME MAPK-PT-00160-CTLFireability-05
FORMULA_NAME MAPK-PT-00160-CTLFireability-06
FORMULA_NAME MAPK-PT-00160-CTLFireability-07
FORMULA_NAME MAPK-PT-00160-CTLFireability-08
FORMULA_NAME MAPK-PT-00160-CTLFireability-09
FORMULA_NAME MAPK-PT-00160-CTLFireability-10
FORMULA_NAME MAPK-PT-00160-CTLFireability-11
FORMULA_NAME MAPK-PT-00160-CTLFireability-12
FORMULA_NAME MAPK-PT-00160-CTLFireability-13
FORMULA_NAME MAPK-PT-00160-CTLFireability-14
FORMULA_NAME MAPK-PT-00160-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1589817515148

[2020-05-18 15:58:39] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-18 15:58:39] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-18 15:58:39] [INFO ] Load time of PNML (sax parser for PT used): 35 ms
[2020-05-18 15:58:39] [INFO ] Transformed 22 places.
[2020-05-18 15:58:39] [INFO ] Transformed 30 transitions.
[2020-05-18 15:58:39] [INFO ] Parsed PT model containing 22 places and 30 transitions in 79 ms.
Parsed 16 properties from file /home/mcc/execution/CTLFireability.xml in 17 ms.
Incomplete random walk after 100005 steps, including 0 resets, run finished after 122 ms. (steps per millisecond=819 ) properties seen :[1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
// Phase 1: matrix 30 rows 22 cols
[2020-05-18 15:58:39] [INFO ] Computed 7 place invariants in 4 ms
[2020-05-18 15:58:39] [INFO ] [Real]Absence check using 7 positive place invariants in 61 ms returned unsat
Successfully simplified 1 atomic propositions for a total of 1 simplifications.
[2020-05-18 15:58:40] [INFO ] Initial state reduction rules for CTL removed 5 formulas.
[2020-05-18 15:58:40] [INFO ] Flatten gal took : 41 ms
[2020-05-18 15:58:40] [INFO ] Initial state reduction rules for CTL removed 5 formulas.
[2020-05-18 15:58:40] [INFO ] Flatten gal took : 20 ms
FORMULA MAPK-PT-00160-CTLFireability-15 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPK-PT-00160-CTLFireability-14 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPK-PT-00160-CTLFireability-12 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPK-PT-00160-CTLFireability-09 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPK-PT-00160-CTLFireability-02 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-18 15:58:40] [INFO ] Applying decomposition
[2020-05-18 15:58:40] [INFO ] Flatten gal took : 15 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph6896574192121585376.txt, -o, /tmp/graph6896574192121585376.bin, -w, /tmp/graph6896574192121585376.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph6896574192121585376.bin, -l, -1, -v, -w, /tmp/graph6896574192121585376.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-18 15:58:40] [INFO ] Decomposing Gal with order
[2020-05-18 15:58:40] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-18 15:58:40] [INFO ] Removed a total of 7 redundant transitions.
[2020-05-18 15:58:40] [INFO ] Flatten gal took : 61 ms
[2020-05-18 15:58:40] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 1 ms.
[2020-05-18 15:58:40] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
[2020-05-18 15:58:40] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 11 CTL formulae.
built 5 ordering constraints for composite.
built 7 ordering constraints for composite.
Detected timeout of ITS tools.
[2020-05-18 16:18:40] [INFO ] Flatten gal took : 4 ms
[2020-05-18 16:18:40] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
[2020-05-18 16:18:40] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 4 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 11 CTL formulae.
Detected timeout of ITS tools.
[2020-05-18 16:38:40] [INFO ] Flatten gal took : 24 ms
[2020-05-18 16:38:40] [INFO ] Input system was already deterministic with 30 transitions.
[2020-05-18 16:38:40] [INFO ] Transformed 22 places.
[2020-05-18 16:38:40] [INFO ] Transformed 30 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-18 16:38:41] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
[2020-05-18 16:38:41] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 11 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.06396e+23,410.81,3009604,2,717243,5,1.55203e+07,6,0,121,1.60195e+07,0


Converting to forward existential form...Done !
original formula: EF((((ERKPP_Phase3>=1)&&(Phase3>=1))&&(ERKPP>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (((ERKPP_Phase3>=1)&&(Phase3>=1))&&(ERKPP>=1)))] != FALSE
(forward)formula 0,1,410.991,3009604,1,0,6,1.55203e+07,8,1,483,1.60195e+07,1
FORMULA MAPK-PT-00160-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG((!(AG(((RasGTP>=1)&&(Raf>=1)))) + ((((ERKP<1)||(MEKPP<1))||(ERK<1))&&(((MEK<1)||(RafP<1))||(RafP_Phase1<1)))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !(((((ERKP<1)||(MEKPP<1))||(ERK<1))&&(((MEK<1)||(RafP<1))||(RafP_Phase1<1))))) * !(E(TRUE U !(((RasGTP>=1)&&(Raf>=1))))))] = FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 1,1,577.816,3022848,1,0,7,1.59111e+07,16,1,2688,1.60195e+07,6
FORMULA MAPK-PT-00160-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(EF(!(EX((Raf_RasGTP>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX((Raf_RasGTP>=1))))] = FALSE
(forward)formula 2,0,722.527,4294812,1,0,10,2.83857e+07,17,3,2688,2.64331e+07,8
FORMULA MAPK-PT-00160-CTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF((((ERKPP_Phase3>=1)&&(MEKP_Phase2>=1))&&((((ERKP<1)||(Phase3<1))||(MEK<1))||(RafP<1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (((ERKPP_Phase3>=1)&&(MEKP_Phase2>=1))&&((((ERKP<1)||(Phase3<1))||(MEK<1))||(RafP<1))))] != FALSE
(forward)formula 3,1,746.085,4405472,1,0,12,2.86626e+07,18,4,2697,2.7082e+07,9
FORMULA MAPK-PT-00160-CTLFireability-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(!(AX(((RasGTP>=1)&&(Raf>=1)))))
=> equivalent forward existential formula: [(EY(FwdU(Init,TRUE)) * !(((RasGTP>=1)&&(Raf>=1))))] != FALSE
(forward)formula 4,1,804.111,4839404,1,0,14,3.09415e+07,18,6,2736,3.06885e+07,11
FORMULA MAPK-PT-00160-CTLFireability-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(EF(((MEKP>=1)&&(RafP>=1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U ((MEKP>=1)&&(RafP>=1)))))] = FALSE
(forward)formula 5,1,978.581,4998236,1,0,15,3.13187e+07,10,6,2531,3.09625e+07,2
FORMULA MAPK-PT-00160-CTLFireability-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(EF(!(EF(((Phase1>=1)&&(RafP>=1))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U ((Phase1>=1)&&(RafP>=1)))))] = FALSE
(forward)formula 6,1,983.346,4998236,1,0,15,3.13187e+07,11,6,2532,3.09625e+07,5
FORMULA MAPK-PT-00160-CTLFireability-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(AG(!(AG(((ERKP>=1)&&(Phase3>=1))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !(((ERKP>=1)&&(Phase3>=1))))))] != FALSE
(forward)formula 7,0,985.976,4998236,1,0,15,3.13187e+07,13,6,2536,3.09625e+07,8
FORMULA MAPK-PT-00160-CTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AF((ERKP_Phase3>=1))
=> equivalent forward existential formula: [FwdG(Init,!((ERKP_Phase3>=1)))] = FALSE
Hit Full ! (commute/partial/dont) 27/0/3

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00160"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is MAPK-PT-00160, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r111-csrt-158961257000036"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00160.tgz
mv MAPK-PT-00160 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;