Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2020-input.r111-csrt-158961257000027.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2020-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
....................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is MAPK-PT-00080, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r111-csrt-158961257000027
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.4K Apr 8 13:00 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K Apr 8 13:00 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Apr 7 16:21 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 7 16:21 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:37 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 24 05:37 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.6K Apr 14 12:42 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Apr 28 14:01 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Apr 14 12:42 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 28 14:01 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.1K Apr 6 19:16 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 15K Apr 6 19:16 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.8K Apr 6 02:42 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 19K Apr 6 02:42 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Apr 6 20:24 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Apr 6 20:24 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 equiv_col
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 instance
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 iscolored
-rw-r--r-- 1 mcc users 25K Mar 24 05:37 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00080-CTLCardinality-00
FORMULA_NAME MAPK-PT-00080-CTLCardinality-01
FORMULA_NAME MAPK-PT-00080-CTLCardinality-02
FORMULA_NAME MAPK-PT-00080-CTLCardinality-03
FORMULA_NAME MAPK-PT-00080-CTLCardinality-04
FORMULA_NAME MAPK-PT-00080-CTLCardinality-05
FORMULA_NAME MAPK-PT-00080-CTLCardinality-06
FORMULA_NAME MAPK-PT-00080-CTLCardinality-07
FORMULA_NAME MAPK-PT-00080-CTLCardinality-08
FORMULA_NAME MAPK-PT-00080-CTLCardinality-09
FORMULA_NAME MAPK-PT-00080-CTLCardinality-10
FORMULA_NAME MAPK-PT-00080-CTLCardinality-11
FORMULA_NAME MAPK-PT-00080-CTLCardinality-12
FORMULA_NAME MAPK-PT-00080-CTLCardinality-13
FORMULA_NAME MAPK-PT-00080-CTLCardinality-14
FORMULA_NAME MAPK-PT-00080-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1589817461129

[2020-05-18 15:57:45] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-18 15:57:45] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-18 15:57:45] [INFO ] Load time of PNML (sax parser for PT used): 39 ms
[2020-05-18 15:57:45] [INFO ] Transformed 22 places.
[2020-05-18 15:57:45] [INFO ] Transformed 30 transitions.
[2020-05-18 15:57:45] [INFO ] Parsed PT model containing 22 places and 30 transitions in 88 ms.
Parsed 16 properties from file /home/mcc/execution/CTLCardinality.xml in 18 ms.
Incomplete random walk after 100006 steps, including 0 resets, run finished after 116 ms. (steps per millisecond=862 ) properties seen :[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1]
// Phase 1: matrix 30 rows 22 cols
[2020-05-18 15:57:45] [INFO ] Computed 7 place invariants in 4 ms
[2020-05-18 15:57:46] [INFO ] [Real]Absence check using 7 positive place invariants in 26 ms returned sat
[2020-05-18 15:57:46] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 15:57:46] [INFO ] [Real]Absence check using state equation in 48 ms returned sat
[2020-05-18 15:57:46] [INFO ] Solution in real domain found non-integer solution.
[2020-05-18 15:57:46] [INFO ] [Nat]Absence check using 7 positive place invariants in 161 ms returned sat
[2020-05-18 15:57:46] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-18 15:57:46] [INFO ] [Nat]Absence check using state equation in 55 ms returned sat
[2020-05-18 15:57:46] [INFO ] Computed and/alt/rep : 29/74/29 causal constraints in 7 ms.
[2020-05-18 15:57:46] [INFO ] Added : 26 causal constraints over 7 iterations in 209 ms. Result :sat
[2020-05-18 15:57:46] [INFO ] [Real]Absence check using 7 positive place invariants in 26 ms returned unsat
[2020-05-18 15:57:46] [INFO ] [Real]Absence check using 7 positive place invariants in 31 ms returned unsat
Successfully simplified 2 atomic propositions for a total of 2 simplifications.
[2020-05-18 15:57:47] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
[2020-05-18 15:57:47] [INFO ] Flatten gal took : 102 ms
[2020-05-18 15:57:47] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
[2020-05-18 15:57:47] [INFO ] Flatten gal took : 17 ms
FORMULA MAPK-PT-00080-CTLCardinality-13 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-18 15:57:47] [INFO ] Applying decomposition
[2020-05-18 15:57:47] [INFO ] Flatten gal took : 17 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph11535402725383875607.txt, -o, /tmp/graph11535402725383875607.bin, -w, /tmp/graph11535402725383875607.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph11535402725383875607.bin, -l, -1, -v, -w, /tmp/graph11535402725383875607.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-18 15:57:47] [INFO ] Decomposing Gal with order
[2020-05-18 15:57:47] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-18 15:57:47] [INFO ] Removed a total of 32 redundant transitions.
[2020-05-18 15:57:47] [INFO ] Flatten gal took : 55 ms
[2020-05-18 15:57:47] [INFO ] Fuse similar labels procedure discarded/fused a total of 4 labels/synchronizations in 4 ms.
[2020-05-18 15:57:47] [INFO ] Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 4 ms
[2020-05-18 15:57:47] [INFO ] Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 15 CTL formulae.
Detected timeout of ITS tools.
[2020-05-18 16:17:47] [INFO ] Flatten gal took : 4 ms
[2020-05-18 16:17:47] [INFO ] Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 24 ms
[2020-05-18 16:17:47] [INFO ] Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 15 CTL formulae.
Detected timeout of ITS tools.
[2020-05-18 16:37:48] [INFO ] Flatten gal took : 10 ms
[2020-05-18 16:37:48] [INFO ] Input system was already deterministic with 30 transitions.
[2020-05-18 16:37:48] [INFO ] Transformed 22 places.
[2020-05-18 16:37:48] [INFO ] Transformed 30 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-18 16:37:48] [INFO ] Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 2 ms
[2020-05-18 16:37:48] [INFO ] Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 4 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 15 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,5.6349e+18,19.678,292336,2,100033,5,1.51543e+06,6,0,121,1.57429e+06,0


Converting to forward existential form...Done !
original formula: !(AG((MEK>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((MEK>=1)))] != FALSE
(forward)formula 0,1,19.996,292336,1,0,8,1.51543e+06,9,2,164,1.57429e+06,1
FORMULA MAPK-PT-00080-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (EF((MEKPP>=2)) * (EG(((ERK<=RasGTP)&&(RafP<=ERKPP))) + EF(((MEKPP_Phase2<=Phase3)&&(Phase1<=MEK_RafP)))))
=> equivalent forward existential formula: ([FwdG((Init * E(TRUE U (MEKPP>=2))),((ERK<=RasGTP)&&(RafP<=ERKPP)))] != FALSE + [(FwdU((Init * E(TRUE U (MEKPP>=2))),TRUE) * ((MEKPP_Phase2<=Phase3)&&(Phase1<=MEK_RafP)))] != FALSE)
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 1,1,372.28,6670860,1,0,12,4.50857e+07,10,4,1421,2.008e+06,2
FORMULA MAPK-PT-00080-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((ERKP_MEKPP>=3))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (ERKP_MEKPP>=3))] != FALSE
(forward)formula 2,1,372.298,6670860,1,0,12,4.50857e+07,11,4,1422,2.008e+06,3
FORMULA MAPK-PT-00080-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AX(EF((Phase3<=MEKPP)))
=> equivalent forward existential formula: [(EY(Init) * !(E(TRUE U (Phase3<=MEKPP))))] = FALSE
(forward)formula 3,1,376.467,6670860,1,0,12,4.50857e+07,16,4,1629,2.008e+06,6
FORMULA MAPK-PT-00080-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (!(A((RasGTP<=MEK_RafP) U (RafP>=1))) * EF((((ERK<=ERKP)&&(Raf_RasGTP<=ERKPP))&&(MEK>=1))))
=> equivalent forward existential formula: [(FwdU((Init * !(!((E(!((RafP>=1)) U (!((RasGTP<=MEK_RafP)) * !((RafP>=1)))) + EG(!((RafP>=1))))))),TRUE) * (((ERK<=ERKP)&&(Raf_RasGTP<=ERKPP))&&(MEK>=1)))] != FALSE
Hit Full ! (commute/partial/dont) 21/0/9
(forward)formula 4,1,395.534,6670860,1,0,15,4.50857e+07,30,5,2003,3.65111e+06,12
FORMULA MAPK-PT-00080-CTLCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(AG(((MEK>=3)||(ERKPP_Phase3<1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((MEK>=3)||(ERKPP_Phase3<1))))] != FALSE
(forward)formula 5,1,396.137,6670860,1,0,18,4.50857e+07,32,7,2008,3.78553e+06,13
FORMULA MAPK-PT-00080-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E(((Phase1>MEKP_Phase2)&&((Raf>=3)||(ERK<=Phase1))) U (((Raf<=ERKP_MEKPP)&&(ERKP_MEKPP<=Raf))&&(MEK>Phase3)))
=> equivalent forward existential formula: [(FwdU(Init,((Phase1>MEKP_Phase2)&&((Raf>=3)||(ERK<=Phase1)))) * (((Raf<=ERKP_MEKPP)&&(ERKP_MEKPP<=Raf))&&(MEK>Phase3)))] != FALSE
Hit Full ! (commute/partial/dont) 19/5/11

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00080"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is MAPK-PT-00080, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r111-csrt-158961257000027"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00080.tgz
mv MAPK-PT-00080 execution
cd execution
if [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "UpperBounds" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] || [ "CTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;