Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2020-input.r081-smll-158922978100532.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is GPPP-PT-C1000N0000000010, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-smll-158922978100532
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 3.4K Apr 4 20:06 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K Apr 4 20:06 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K Apr 4 09:15 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K Apr 4 09:15 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:37 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K Mar 24 05:37 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.5K Apr 8 14:56 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Apr 28 14:01 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Apr 8 14:56 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 28 14:01 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K Apr 3 21:31 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K Apr 3 21:31 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 4.0K Apr 3 13:51 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K Apr 3 13:51 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Apr 4 01:37 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Apr 4 01:37 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 equiv_col
-rw-r--r-- 1 mcc users 17 Mar 24 05:37 instance
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 iscolored
-rw-r--r-- 1 mcc users 1 Mar 24 05:37 large_marking
-rw-r--r-- 1 mcc users 21K Mar 24 05:37 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-00
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-01
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-02
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-03
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-04
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-05
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-06
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-07
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-08
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-09
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-10
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-11
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-12
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-13
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-14
FORMULA_NAME GPPP-PT-C1000N0000000010-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1589804269400

[2020-05-18 12:17:52] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-18 12:17:52] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-18 12:17:52] [INFO ] Load time of PNML (sax parser for PT used): 40 ms
[2020-05-18 12:17:52] [INFO ] Transformed 33 places.
[2020-05-18 12:17:52] [INFO ] Transformed 22 transitions.
[2020-05-18 12:17:52] [INFO ] Parsed PT model containing 33 places and 22 transitions in 93 ms.
Parsed 16 properties from file /home/mcc/execution/CTLFireability.xml in 21 ms.
Incomplete random walk after 100004 steps, including 233 resets, run finished after 202 ms. (steps per millisecond=495 ) properties seen :[1, 1, 1, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1]
// Phase 1: matrix 22 rows 33 cols
[2020-05-18 12:17:52] [INFO ] Invariants computation overflowed in 6 ms
[2020-05-18 12:17:52] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 12:17:52] [INFO ] [Real]Absence check using state equation in 73 ms returned unsat
[2020-05-18 12:17:52] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 12:17:52] [INFO ] [Real]Absence check using state equation in 37 ms returned unsat
[2020-05-18 12:17:52] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 12:17:52] [INFO ] [Real]Absence check using state equation in 38 ms returned unsat
[2020-05-18 12:17:52] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 12:17:52] [INFO ] [Real]Absence check using state equation in 39 ms returned sat
[2020-05-18 12:17:52] [INFO ] Solution in real domain found non-integer solution.
[2020-05-18 12:17:52] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-18 12:17:52] [INFO ] [Nat]Absence check using state equation in 53 ms returned unsat
Successfully simplified 4 atomic propositions for a total of 5 simplifications.
[2020-05-18 12:17:53] [INFO ] Initial state reduction rules for CTL removed 6 formulas.
[2020-05-18 12:17:53] [INFO ] Flatten gal took : 40 ms
[2020-05-18 12:17:53] [INFO ] Initial state reduction rules for CTL removed 6 formulas.
[2020-05-18 12:17:53] [INFO ] Flatten gal took : 12 ms
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-14 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-12 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-11 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-03 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-02 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-01 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-18 12:17:53] [INFO ] Applying decomposition
[2020-05-18 12:17:53] [INFO ] Flatten gal took : 9 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph3745765236752930773.txt, -o, /tmp/graph3745765236752930773.bin, -w, /tmp/graph3745765236752930773.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph3745765236752930773.bin, -l, -1, -v, -w, /tmp/graph3745765236752930773.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-18 12:17:53] [INFO ] Decomposing Gal with order
[2020-05-18 12:17:53] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-18 12:17:53] [INFO ] Removed a total of 2 redundant transitions.
[2020-05-18 12:17:53] [INFO ] Flatten gal took : 84 ms
[2020-05-18 12:17:53] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 2 ms.
[2020-05-18 12:17:53] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 5 ms
[2020-05-18 12:17:53] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 3 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 10 CTL formulae.
built 7 ordering constraints for composite.
built 10 ordering constraints for composite.
built 7 ordering constraints for composite.
built 2 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.41846e+10,14.7887,130784,11365,10866,120623,22120,129,549988,74,716071,0


Converting to forward existential form...Done !
original formula: EF((((!(EF((((i1.u2.NADPplus>=2)&&(u7.G6P>=1))&&(u7.b2>=1)))) * (u5._2PG<1)) * (i2.u6.start<1)) * ((i2.u1.NADH<1)||(i2.u1.Pyr<1))))
=> equivalent forward existential formula: [((((FwdU(Init,TRUE) * ((i2.u1.NADH<1)||(i2.u1.Pyr<1))) * (i2.u6.start<1)) * (u5._2PG<1)) * !(E(TRUE U (((i1.u2.NADPplus>=2)&&(u7.G6P>=1))&&(u7.b2>=1)))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions Transketolase2, i1.u3.Glutathione_oxidation, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :1/19/2/22
(forward)formula 0,1,51.5865,342604,1,0,261654,342080,495,921479,949,1.72925e+06,284996
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: (EX((AF(((i2.u0.ATP>=1)&&(u7.F6P>=1))) + ((i2.u0._1_3_BPG>=1)&&(i2.u0.ADP>=1)))) + E((((u8.S7P<1)||(i5.u4.GAP<1))||(i5.u9.c1<7000)) U AX((u5._3PG>=1))))
=> equivalent forward existential formula: (([(EY(Init) * !(EG(!(((i2.u0.ATP>=1)&&(u7.F6P>=1))))))] != FALSE + [(EY(Init) * ((i2.u0._1_3_BPG>=1)&&(i2.u0.ADP>=1)))] != FALSE) + [(FwdU(Init,(((u8.S7P<1)||(i5.u4.GAP<1))||(i5.u9.c1<7000))) * !(EX(!((u5._3PG>=1)))))] != FALSE)
Using saturation style SCC detection
Using saturation style SCC detection
Fast SCC detection found a local SCC at level 2
Fast SCC detection found an SCC at level 3
Fast SCC detection found an SCC at level 4
Fast SCC detection found an SCC at level 5
Detected timeout of ITS tools.
[2020-05-18 12:37:53] [INFO ] Flatten gal took : 10 ms
[2020-05-18 12:37:53] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 1 ms
[2020-05-18 12:37:53] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 9 CTL formulae.
Detected timeout of ITS tools.
[2020-05-18 12:57:55] [INFO ] Flatten gal took : 614 ms
[2020-05-18 12:57:56] [INFO ] Input system was already deterministic with 22 transitions.
[2020-05-18 12:57:56] [INFO ] Transformed 33 places.
[2020-05-18 12:57:56] [INFO ] Transformed 22 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-18 12:57:56] [INFO ] Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 8 ms
[2020-05-18 12:57:56] [INFO ] Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 3 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 9 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.41846e+10,1.92731,47984,2,31449,5,251624,6,0,161,231997,0


Converting to forward existential form...Done !
original formula: (EX((AF(((ATP>=1)&&(F6P>=1))) + ((_1_3_BPG>=1)&&(ADP>=1)))) + E((((S7P<1)||(GAP<1))||(c1<7000)) U AX((_3PG>=1))))
=> equivalent forward existential formula: (([(EY(Init) * !(EG(!(((ATP>=1)&&(F6P>=1))))))] != FALSE + [(EY(Init) * ((_1_3_BPG>=1)&&(ADP>=1)))] != FALSE) + [(FwdU(Init,(((S7P<1)||(GAP<1))||(c1<7000))) * !(EX(!((_3PG>=1)))))] != FALSE)
Reverse transition relation is NOT exact ! Due to transitions t8, t13, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :1/19/2/22
Hit Full ! (commute/partial/dont) 15/0/7
(forward)formula 0,0,474.64,6405176,1,0,2454,3.79639e+07,21,1199,1382,4.33337e+07,2272
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(E(((ATP<1)||(F6P<1)) U (_2PG>=1)))
=> equivalent forward existential formula: [(FwdU(Init,((ATP<1)||(F6P<1))) * (_2PG>=1))] = FALSE
Hit Full ! (commute/partial/dont) 14/0/8
(forward)formula 1,1,474.684,6405176,1,0,2454,3.79639e+07,28,1199,1411,4.33337e+07,2276
FORMULA GPPP-PT-C1000N0000000010-CTLFireability-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C1000N0000000010"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is GPPP-PT-C1000N0000000010, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-smll-158922978100532"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C1000N0000000010.tgz
mv GPPP-PT-C1000N0000000010 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;