Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2020-input.r066-tajo-158922814500569.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Diffusion2D-PT-D50N100, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r066-tajo-158922814500569
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 3.7K Mar 31 06:36 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K Mar 31 06:36 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.3K Mar 29 22:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K Mar 29 22:58 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 24 05:37 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K Mar 24 05:37 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.6K Apr 8 14:49 LTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Apr 28 14:00 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Apr 8 14:49 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 28 14:00 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K Mar 28 14:32 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Mar 28 14:32 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.6K Mar 27 07:33 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K Mar 27 07:33 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Mar 28 14:50 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Mar 28 14:50 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 equiv_col
-rw-r--r-- 1 mcc users 8 Mar 24 05:37 instance
-rw-r--r-- 1 mcc users 6 Mar 24 05:37 iscolored
-rw-r--r-- 1 mcc users 7.3M Mar 24 05:37 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N100-00
FORMULA_NAME Diffusion2D-PT-D50N100-01
FORMULA_NAME Diffusion2D-PT-D50N100-02
FORMULA_NAME Diffusion2D-PT-D50N100-03
FORMULA_NAME Diffusion2D-PT-D50N100-04
FORMULA_NAME Diffusion2D-PT-D50N100-05
FORMULA_NAME Diffusion2D-PT-D50N100-06
FORMULA_NAME Diffusion2D-PT-D50N100-07
FORMULA_NAME Diffusion2D-PT-D50N100-08
FORMULA_NAME Diffusion2D-PT-D50N100-09
FORMULA_NAME Diffusion2D-PT-D50N100-10
FORMULA_NAME Diffusion2D-PT-D50N100-11
FORMULA_NAME Diffusion2D-PT-D50N100-12
FORMULA_NAME Diffusion2D-PT-D50N100-13
FORMULA_NAME Diffusion2D-PT-D50N100-14
FORMULA_NAME Diffusion2D-PT-D50N100-15

=== Now, execution of the tool begins

BK_START 1590127690777

[2020-05-22 06:08:12] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-22 06:08:12] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-22 06:08:12] [INFO ] Load time of PNML (sax parser for PT used): 356 ms
[2020-05-22 06:08:12] [INFO ] Transformed 2500 places.
[2020-05-22 06:08:12] [INFO ] Transformed 19404 transitions.
[2020-05-22 06:08:12] [INFO ] Parsed PT model containing 2500 places and 19404 transitions in 456 ms.
Parsed 16 properties from file /home/mcc/execution/LTLCardinality.xml in 127 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 100018 steps, including 0 resets, run finished after 103 ms. (steps per millisecond=971 ) properties seen :[0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 1, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1]
// Phase 1: matrix 19404 rows 2500 cols
[2020-05-22 06:08:13] [INFO ] Computed 1 place invariants in 174 ms
[2020-05-22 06:08:13] [INFO ] [Real]Absence check using 1 positive place invariants in 53 ms returned sat
[2020-05-22 06:08:13] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:08:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:08:33] [INFO ] [Real]Absence check using state equation in 19647 ms returned (error "Failed to check-sat")
[2020-05-22 06:08:33] [INFO ] [Real]Absence check using 1 positive place invariants in 44 ms returned sat
[2020-05-22 06:08:33] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:08:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:08:53] [INFO ] [Real]Absence check using state equation in 19739 ms returned (error "Failed to check-sat")
[2020-05-22 06:08:53] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:08:53] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:09:13] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:09:13] [INFO ] [Real]Absence check using state equation in 19787 ms returned unknown
[2020-05-22 06:09:13] [INFO ] [Real]Absence check using 1 positive place invariants in 32 ms returned sat
[2020-05-22 06:09:13] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:09:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:09:33] [INFO ] [Real]Absence check using state equation in 19766 ms returned (error "Failed to check-sat")
[2020-05-22 06:09:33] [INFO ] [Real]Absence check using 1 positive place invariants in 42 ms returned sat
[2020-05-22 06:09:33] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:09:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:09:53] [INFO ] [Real]Absence check using state equation in 19761 ms returned (error "Failed to check-sat")
[2020-05-22 06:09:53] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:09:53] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:10:13] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:10:13] [INFO ] [Real]Absence check using state equation in 19805 ms returned (error "Failed to check-sat")
[2020-05-22 06:10:13] [INFO ] [Real]Absence check using 1 positive place invariants in 31 ms returned sat
[2020-05-22 06:10:13] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:10:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:10:33] [INFO ] [Real]Absence check using state equation in 19769 ms returned (error "Failed to check-sat")
[2020-05-22 06:10:33] [INFO ] [Real]Absence check using 1 positive place invariants in 42 ms returned sat
[2020-05-22 06:10:33] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:10:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:10:53] [INFO ] [Real]Absence check using state equation in 19763 ms returned unknown
[2020-05-22 06:10:53] [INFO ] [Real]Absence check using 1 positive place invariants in 29 ms returned sat
[2020-05-22 06:10:53] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:11:13] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:11:13] [INFO ] [Real]Absence check using state equation in 19859 ms returned (error "Failed to check-sat")
[2020-05-22 06:11:13] [INFO ] [Real]Absence check using 1 positive place invariants in 29 ms returned sat
[2020-05-22 06:11:13] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:11:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:11:33] [INFO ] [Real]Absence check using state equation in 19746 ms returned (error "Failed to check-sat")
[2020-05-22 06:11:33] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:11:33] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:11:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:11:53] [INFO ] [Real]Absence check using state equation in 19766 ms returned (error "Failed to check-sat")
[2020-05-22 06:11:53] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:11:53] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:12:13] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:12:13] [INFO ] [Real]Absence check using state equation in 19791 ms returned (error "Failed to check-sat")
[2020-05-22 06:12:13] [INFO ] [Real]Absence check using 1 positive place invariants in 13 ms returned unsat
[2020-05-22 06:12:14] [INFO ] [Real]Absence check using 1 positive place invariants in 31 ms returned sat
[2020-05-22 06:12:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:12:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:12:33] [INFO ] [Real]Absence check using state equation in 19749 ms returned unknown
[2020-05-22 06:12:34] [INFO ] [Real]Absence check using 1 positive place invariants in 32 ms returned sat
[2020-05-22 06:12:34] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:12:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:12:53] [INFO ] [Real]Absence check using state equation in 19804 ms returned unknown
[2020-05-22 06:12:54] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:12:54] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:13:13] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:13:13] [INFO ] [Real]Absence check using state equation in 19799 ms returned (error "Failed to check-sat")
[2020-05-22 06:13:14] [INFO ] [Real]Absence check using 1 positive place invariants in 42 ms returned sat
[2020-05-22 06:13:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:13:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:13:33] [INFO ] [Real]Absence check using state equation in 19769 ms returned unknown
[2020-05-22 06:13:34] [INFO ] [Real]Absence check using 1 positive place invariants in 41 ms returned sat
[2020-05-22 06:13:34] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:13:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:13:53] [INFO ] [Real]Absence check using state equation in 19743 ms returned (error "Failed to check-sat")
[2020-05-22 06:13:54] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:13:54] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:14:13] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:14:13] [INFO ] [Real]Absence check using state equation in 19738 ms returned (error "Failed to check-sat")
[2020-05-22 06:14:14] [INFO ] [Real]Absence check using 1 positive place invariants in 31 ms returned sat
[2020-05-22 06:14:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:14:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:14:33] [INFO ] [Real]Absence check using state equation in 19804 ms returned (error "Failed to check-sat")
[2020-05-22 06:14:34] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:14:34] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:14:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:14:53] [INFO ] [Real]Absence check using state equation in 19758 ms returned unknown
[2020-05-22 06:14:54] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:14:54] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:15:13] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:15:13] [INFO ] [Real]Absence check using state equation in 19767 ms returned (error "Failed to check-sat")
[2020-05-22 06:15:14] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:15:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:15:33] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:15:33] [INFO ] [Real]Absence check using state equation in 19756 ms returned unknown
[2020-05-22 06:15:34] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:15:34] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:15:53] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:15:53] [INFO ] [Real]Absence check using state equation in 19746 ms returned (error "Failed to check-sat")
[2020-05-22 06:15:54] [INFO ] [Real]Absence check using 1 positive place invariants in 30 ms returned sat
[2020-05-22 06:15:54] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-22 06:16:14] [INFO ] SMT solver returned unknown. Retrying;
[2020-05-22 06:16:14] [INFO ] [Real]Absence check using state equation in 19813 ms returned (error "Failed to check-sat")
Successfully simplified 1 atomic propositions for a total of 2 simplifications.
[2020-05-22 06:16:15] [INFO ] Initial state reduction rules for CTL removed 3 formulas.
[2020-05-22 06:16:15] [INFO ] Flatten gal took : 908 ms
FORMULA Diffusion2D-PT-D50N100-15 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Diffusion2D-PT-D50N100-09 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Diffusion2D-PT-D50N100-01 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-22 06:16:15] [INFO ] Flatten gal took : 426 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
[2020-05-22 06:16:16] [INFO ] Applying decomposition
[2020-05-22 06:16:17] [INFO ] Flatten gal took : 842 ms
[2020-05-22 06:16:18] [INFO ] Input system was already deterministic with 19404 transitions.
[2020-05-22 06:16:18] [INFO ] Too many transitions (19404) to apply POR reductions. Disabling POR matrices.
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph2749386444050255487.txt, -o, /tmp/graph2749386444050255487.bin, -w, /tmp/graph2749386444050255487.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph2749386444050255487.bin, -l, -1, -v, -w, /tmp/graph2749386444050255487.weights, -q, 0, -e, 0.001], workingDir=null]
[2020-05-22 06:16:19] [INFO ] Built C files in 3004ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
[2020-05-22 06:16:19] [INFO ] Decomposing Gal with order
[2020-05-22 06:16:19] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-22 06:16:21] [INFO ] Removed a total of 14114 redundant transitions.
[2020-05-22 06:16:21] [INFO ] Flatten gal took : 1395 ms
[2020-05-22 06:16:22] [INFO ] Fuse similar labels procedure discarded/fused a total of 1426 labels/synchronizations in 481 ms.
[2020-05-22 06:16:25] [INFO ] Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 249 ms
[2020-05-22 06:16:25] [INFO ] Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 13 LTL properties
Checking formula 0 : !((G(!(F(X(!(G("((gu376.cAMP__9_18_<=gu376.cAMP__19_8_)||(gu34.cAMP__47_36_<=gu34.cAMP__13_46_))"))))))))
Formula 0 simplified : !G!FX!G"((gu376.cAMP__9_18_<=gu376.cAMP__19_8_)||(gu34.cAMP__47_36_<=gu34.cAMP__13_46_))"
Compilation finished in 391829 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 241 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](!( <>(X(!( []((LTLAP0==true))) ))) ), --buchi-type=spotba], workingDir=/home/mcc/execution]
/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc: error while loading shared libraries: libltdl.so.7: cannot open shared object file: No such file or directory
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](!( <>(X(!( []((LTLAP0==true))) ))) ), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](!( <>(X(!( []((LTLAP0==true))) ))) ), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:170)
at fr.lip6.move.gal.application.LTSminRunner.access$10(LTSminRunner.java:124)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:93)
at java.base/java.lang.Thread.run(Thread.java:834)
Detected timeout of ITS tools.
[2020-05-22 06:39:07] [INFO ] Flatten gal took : 415 ms
[2020-05-22 06:39:07] [INFO ] Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 54 ms
[2020-05-22 06:39:07] [INFO ] Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 13 LTL properties
Checking formula 0 : !((G(!(F(X(!(G("((cAMP__9_18_<=cAMP__19_8_)||(cAMP__47_36_<=cAMP__13_46_))"))))))))
Formula 0 simplified : !G!FX!G"((cAMP__9_18_<=cAMP__19_8_)||(cAMP__47_36_<=cAMP__13_46_))"
Detected timeout of ITS tools.
[2020-05-22 07:01:49] [INFO ] Flatten gal took : 348 ms
[2020-05-22 07:01:49] [INFO ] Input system was already deterministic with 19404 transitions.
[2020-05-22 07:01:49] [INFO ] Transformed 2500 places.
[2020-05-22 07:01:49] [INFO ] Transformed 19404 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-22 07:01:52] [INFO ] Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 39 ms
[2020-05-22 07:01:52] [INFO ] Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Read 13 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !((G(!(F(X(!(G("((cAMP__9_18_<=cAMP__19_8_)||(cAMP__47_36_<=cAMP__13_46_))"))))))))
Formula 0 simplified : !G!FX!G"((cAMP__9_18_<=cAMP__19_8_)||(cAMP__47_36_<=cAMP__13_46_))"

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N100"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D50N100, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r066-tajo-158922814500569"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N100.tgz
mv Diffusion2D-PT-D50N100 execution
cd execution
if [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "UpperBounds" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] || [ "LTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;