Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2020-input.r012-smll-158897530900221.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-25, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r012-smll-158897530900221
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 3.7K Apr 28 14:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K Apr 28 14:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Apr 28 14:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 28 14:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Apr 28 14:22 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.9K Apr 28 14:22 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K Apr 28 14:22 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K Apr 28 14:22 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 28 14:22 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K Apr 28 14:22 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Apr 28 14:22 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.6K Apr 28 14:22 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 28 14:22 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Apr 28 14:22 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Apr 28 14:22 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Apr 28 14:22 equiv_col
-rw-r--r-- 1 mcc users 3 Apr 28 14:22 instance
-rw-r--r-- 1 mcc users 6 Apr 28 14:22 iscolored
-rw-r--r-- 1 mcc users 33K Apr 28 14:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1589200254984

[2020-05-11 12:30:58] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2020-05-11 12:30:58] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-11 12:30:58] [INFO ] Load time of PNML (sax parser for PT used): 83 ms
[2020-05-11 12:30:58] [INFO ] Transformed 39 places.
[2020-05-11 12:30:58] [INFO ] Transformed 64 transitions.
[2020-05-11 12:30:58] [INFO ] Parsed PT model containing 39 places and 64 transitions in 163 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 15 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 7 ms.18868KB memory used
Starting structural reductions, iteration 0 : 39/39 places, 64/64 transitions.
Discarding 1 places :
Also discarding 0 output transitions
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.12 ms
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Performed 10 Post agglomeration using F-continuation condition.Transition count delta: 10
Deduced a syphon composed of 10 places in 0 ms
Reduce places removed 10 places and 0 transitions.
Iterating global reduction 0 with 20 rules applied. Total rules applied 24 place count 26 transition count 53
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: -6
Deduced a syphon composed of 5 places in 1 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 0 with 10 rules applied. Total rules applied 34 place count 21 transition count 59
Drop transitions removed 15 transitions
Redundant transition composition rules discarded 15 transitions
Iterating global reduction 0 with 15 rules applied. Total rules applied 49 place count 21 transition count 44
Applied a total of 49 rules in 65 ms. Remains 21 /39 variables (removed 18) and now considering 44/64 (removed 20) transitions.
Finished structural reductions, in 1 iterations. Remains : 21/39 places, 44/64 transitions.
Random walk for 1250002 steps, including 0 resets, run took 540 ms (no deadlock found). (steps per millisecond=2314 )
Finished Parikh directed walk after 582 steps, including 0 resets, run found a deadlock after 2 ms. (steps per millisecond=291 )
FORMULA ReachabilityDeadlock TRUE TECHNIQUES TOPOLOGICAL STRUCTURAL_REDUCTION RANDOM_WALK

BK_STOP 1589200260026

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 1800 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-25, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r012-smll-158897530900221"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;