About the Execution of ITS-Tools for Angiogenesis-PT-25
| Execution Summary | |||||
| Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
| 15742.900 | 3600000.00 | 3646710.00 | 8597.80 | ???????????F?F?? | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/data/fkordon/mcc2020-input.r006-smll-158897515900358.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2020-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-25, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r006-smll-158897515900358
=====================================================================
--------------------
preparation of the directory to be used:
/home/mcc/execution
total 216K
-rw-r--r-- 1 mcc users 3.7K Apr 28 14:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K Apr 28 14:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Apr 28 14:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 28 14:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Apr 28 14:22 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Apr 28 14:22 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.9K Apr 28 14:22 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K Apr 28 14:22 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K Apr 28 14:22 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 28 14:22 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K Apr 28 14:22 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Apr 28 14:22 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.6K Apr 28 14:22 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 28 14:22 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Apr 28 14:22 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Apr 28 14:22 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Apr 28 14:22 equiv_col
-rw-r--r-- 1 mcc users 3 Apr 28 14:22 instance
-rw-r--r-- 1 mcc users 6 Apr 28 14:22 iscolored
-rw-r--r-- 1 mcc users 33K Apr 28 14:22 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-00
FORMULA_NAME Angiogenesis-PT-25-01
FORMULA_NAME Angiogenesis-PT-25-02
FORMULA_NAME Angiogenesis-PT-25-03
FORMULA_NAME Angiogenesis-PT-25-04
FORMULA_NAME Angiogenesis-PT-25-05
FORMULA_NAME Angiogenesis-PT-25-06
FORMULA_NAME Angiogenesis-PT-25-07
FORMULA_NAME Angiogenesis-PT-25-08
FORMULA_NAME Angiogenesis-PT-25-09
FORMULA_NAME Angiogenesis-PT-25-10
FORMULA_NAME Angiogenesis-PT-25-11
FORMULA_NAME Angiogenesis-PT-25-12
FORMULA_NAME Angiogenesis-PT-25-13
FORMULA_NAME Angiogenesis-PT-25-14
FORMULA_NAME Angiogenesis-PT-25-15
=== Now, execution of the tool begins
BK_START 1589515237381
[2020-05-15 04:00:40] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-15 04:00:40] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-15 04:00:40] [INFO ] Load time of PNML (sax parser for PT used): 81 ms
[2020-05-15 04:00:40] [INFO ] Transformed 39 places.
[2020-05-15 04:00:40] [INFO ] Transformed 64 transitions.
[2020-05-15 04:00:40] [INFO ] Parsed PT model containing 39 places and 64 transitions in 158 ms.
Parsed 16 properties from file /home/mcc/execution/LTLFireability.xml in 30 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 100003 steps, including 1 resets, run finished after 128 ms. (steps per millisecond=781 ) properties seen :[1, 1, 1, 1, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0]
// Phase 1: matrix 64 rows 39 cols
[2020-05-15 04:00:40] [INFO ] Computed 8 place invariants in 9 ms
[2020-05-15 04:00:40] [INFO ] [Real]Absence check using 8 positive place invariants in 24 ms returned sat
[2020-05-15 04:00:40] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:40] [INFO ] [Real]Absence check using state equation in 51 ms returned sat
[2020-05-15 04:00:40] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 15 ms.
[2020-05-15 04:00:40] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:41] [INFO ] [Nat]Absence check using 8 positive place invariants in 13 ms returned sat
[2020-05-15 04:00:41] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:41] [INFO ] [Nat]Absence check using state equation in 49 ms returned sat
[2020-05-15 04:00:41] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 12 ms.
[2020-05-15 04:00:41] [INFO ] Added : 58 causal constraints over 14 iterations in 168 ms. Result :sat
[2020-05-15 04:00:41] [INFO ] [Real]Absence check using 8 positive place invariants in 7 ms returned sat
[2020-05-15 04:00:41] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:41] [INFO ] [Real]Absence check using state equation in 44 ms returned sat
[2020-05-15 04:00:41] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 18 ms.
[2020-05-15 04:00:41] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:41] [INFO ] [Nat]Absence check using 8 positive place invariants in 8 ms returned sat
[2020-05-15 04:00:41] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:41] [INFO ] [Nat]Absence check using state equation in 39 ms returned sat
[2020-05-15 04:00:41] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 13 ms.
[2020-05-15 04:00:41] [INFO ] Added : 56 causal constraints over 12 iterations in 137 ms. Result :sat
[2020-05-15 04:00:41] [INFO ] [Real]Absence check using 8 positive place invariants in 6 ms returned sat
[2020-05-15 04:00:41] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:41] [INFO ] [Real]Absence check using state equation in 36 ms returned sat
[2020-05-15 04:00:41] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 9 ms.
[2020-05-15 04:00:41] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:41] [INFO ] [Nat]Absence check using 8 positive place invariants in 7 ms returned sat
[2020-05-15 04:00:41] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:41] [INFO ] [Nat]Absence check using state equation in 35 ms returned sat
[2020-05-15 04:00:41] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 10 ms.
[2020-05-15 04:00:41] [INFO ] Added : 55 causal constraints over 11 iterations in 112 ms. Result :sat
[2020-05-15 04:00:41] [INFO ] [Real]Absence check using 8 positive place invariants in 7 ms returned sat
[2020-05-15 04:00:41] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:41] [INFO ] [Real]Absence check using state equation in 41 ms returned sat
[2020-05-15 04:00:41] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 12 ms.
[2020-05-15 04:00:42] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using 8 positive place invariants in 6 ms returned sat
[2020-05-15 04:00:42] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using state equation in 38 ms returned sat
[2020-05-15 04:00:42] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 10 ms.
[2020-05-15 04:00:42] [INFO ] Added : 58 causal constraints over 13 iterations in 139 ms. Result :sat
[2020-05-15 04:00:42] [INFO ] [Real]Absence check using 8 positive place invariants in 4 ms returned sat
[2020-05-15 04:00:42] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:42] [INFO ] [Real]Absence check using state equation in 39 ms returned sat
[2020-05-15 04:00:42] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 8 ms.
[2020-05-15 04:00:42] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using 8 positive place invariants in 7 ms returned sat
[2020-05-15 04:00:42] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using state equation in 35 ms returned sat
[2020-05-15 04:00:42] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 9 ms.
[2020-05-15 04:00:42] [INFO ] Added : 58 causal constraints over 12 iterations in 130 ms. Result :sat
[2020-05-15 04:00:42] [INFO ] [Real]Absence check using 8 positive place invariants in 4 ms returned sat
[2020-05-15 04:00:42] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:42] [INFO ] [Real]Absence check using state equation in 38 ms returned sat
[2020-05-15 04:00:42] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 11 ms.
[2020-05-15 04:00:42] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using 8 positive place invariants in 7 ms returned sat
[2020-05-15 04:00:42] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using state equation in 39 ms returned sat
[2020-05-15 04:00:42] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 10 ms.
[2020-05-15 04:00:42] [INFO ] Added : 51 causal constraints over 11 iterations in 109 ms. Result :sat
[2020-05-15 04:00:42] [INFO ] [Real]Absence check using 8 positive place invariants in 5 ms returned sat
[2020-05-15 04:00:42] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:42] [INFO ] [Real]Absence check using state equation in 31 ms returned sat
[2020-05-15 04:00:42] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 9 ms.
[2020-05-15 04:00:42] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using 8 positive place invariants in 10 ms returned sat
[2020-05-15 04:00:42] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:42] [INFO ] [Nat]Absence check using state equation in 37 ms returned sat
[2020-05-15 04:00:42] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 15 ms.
[2020-05-15 04:00:43] [INFO ] Added : 59 causal constraints over 12 iterations in 130 ms. Result :sat
[2020-05-15 04:00:43] [INFO ] [Real]Absence check using 8 positive place invariants in 4 ms returned sat
[2020-05-15 04:00:43] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:43] [INFO ] [Real]Absence check using state equation in 30 ms returned sat
[2020-05-15 04:00:43] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 9 ms.
[2020-05-15 04:00:43] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:43] [INFO ] [Nat]Absence check using 8 positive place invariants in 6 ms returned sat
[2020-05-15 04:00:43] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:43] [INFO ] [Nat]Absence check using state equation in 29 ms returned sat
[2020-05-15 04:00:43] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 11 ms.
[2020-05-15 04:00:43] [INFO ] Added : 57 causal constraints over 12 iterations in 145 ms. Result :sat
[2020-05-15 04:00:43] [INFO ] [Real]Absence check using 8 positive place invariants in 6 ms returned sat
[2020-05-15 04:00:43] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:43] [INFO ] [Real]Absence check using state equation in 38 ms returned sat
[2020-05-15 04:00:43] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 8 ms.
[2020-05-15 04:00:43] [INFO ] Solution in real domain found non-integer solution.
[2020-05-15 04:00:43] [INFO ] [Nat]Absence check using 8 positive place invariants in 9 ms returned sat
[2020-05-15 04:00:43] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2020-05-15 04:00:43] [INFO ] [Nat]Absence check using state equation in 37 ms returned sat
[2020-05-15 04:00:43] [INFO ] Computed and/alt/rep : 61/165/61 causal constraints in 7 ms.
[2020-05-15 04:00:43] [INFO ] Added : 50 causal constraints over 10 iterations in 114 ms. Result :sat
[2020-05-15 04:00:43] [INFO ] Initial state reduction rules for CTL removed 2 formulas.
[2020-05-15 04:00:44] [INFO ] Flatten gal took : 67 ms
FORMULA Angiogenesis-PT-25-13 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-25-11 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-15 04:00:44] [INFO ] Flatten gal took : 21 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
[2020-05-15 04:00:44] [INFO ] Applying decomposition
[2020-05-15 04:00:44] [INFO ] Flatten gal took : 18 ms
[2020-05-15 04:00:44] [INFO ] Input system was already deterministic with 64 transitions.
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph8149561049667912811.txt, -o, /tmp/graph8149561049667912811.bin, -w, /tmp/graph8149561049667912811.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph8149561049667912811.bin, -l, -1, -v, -w, /tmp/graph8149561049667912811.weights, -q, 0, -e, 0.001], workingDir=null]
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 64 rows 39 cols
[2020-05-15 04:00:44] [INFO ] Computed 8 place invariants in 2 ms
inv : KdStar + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 = 25
inv : Gab1 + GP3 + GStarP3 + GStarP3kP3 + GStarPgP3 + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 = 25
inv : DAGE + Enz = 25
inv : GStarPgP3 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 + Pg = 25
inv : Pten + PtP2 + PtP3 + PtP3P2 = 25
inv : AktP3 + DAG + DAGE + GP3 + GStarP3 + GStarP3kP3 + GStarPgP3 + KdStarGP3 + KdStarGStarP3 + KdStarGStarP3kP3 + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + 2*KdStarGStarP3kStarP3P2 + KdStarGStarPgP3 + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + 2*KdStarGStarPgStarP3P2 + KdStarPgStarP2 + Pip2 + Pip3 + PtP2 + PtP3 + 2*PtP3P2 = 25
inv : Akt + AktP3 + AktStar = 25
inv : GStarP3kP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + P3k = 25
Total of 8 invariants.
[2020-05-15 04:00:44] [INFO ] Computed 8 place invariants in 3 ms
[2020-05-15 04:00:44] [INFO ] Decomposing Gal with order
[2020-05-15 04:00:44] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-15 04:00:44] [INFO ] Proved 39 variables to be positive in 89 ms
[2020-05-15 04:00:44] [INFO ] Computing symmetric may disable matrix : 64 transitions.
[2020-05-15 04:00:44] [INFO ] Computation of disable matrix completed :0/64 took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-15 04:00:44] [INFO ] Computation of Complete disable matrix. took 3 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-15 04:00:44] [INFO ] Computing symmetric may enable matrix : 64 transitions.
[2020-05-15 04:00:44] [INFO ] Computation of Complete enable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-15 04:00:44] [INFO ] Removed a total of 41 redundant transitions.
[2020-05-15 04:00:44] [INFO ] Flatten gal took : 55 ms
[2020-05-15 04:00:44] [INFO ] Fuse similar labels procedure discarded/fused a total of 10 labels/synchronizations in 6 ms.
[2020-05-15 04:00:44] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 5 ms
[2020-05-15 04:00:44] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]
its-ltl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 14 LTL properties
Checking formula 0 : !(((X((F(X(F("((i2.u7.KdStarGStarP3kStarP3P2>=1)||((i0.u5.KdStar>=1)&&(i1.u4.Pg>=1)))"))))&&(F("(i2.u2.KdStarGStarP3>=1)"))))||(G("((i0.u5.KdStar<1)||(i1.u4.Pg<1))"))))
Formula 0 simplified : !(X(FXF"((i2.u7.KdStarGStarP3kStarP3P2>=1)||((i0.u5.KdStar>=1)&&(i1.u4.Pg>=1)))" & F"(i2.u2.KdStarGStarP3>=1)") | G"((i0.u5.KdStar<1)||(i1.u4.Pg<1))")
built 15 ordering constraints for composite.
built 7 ordering constraints for composite.
built 13 ordering constraints for composite.
built 16 ordering constraints for composite.
built 12 ordering constraints for composite.
built 7 ordering constraints for composite.
built 7 ordering constraints for composite.
[2020-05-15 04:00:46] [INFO ] Computing symmetric co enabling matrix : 64 transitions.
[2020-05-15 04:00:47] [INFO ] Computation of co-enabling matrix(4/64) took 1013 ms. Total solver calls (SAT/UNSAT): 274(274/0)
[2020-05-15 04:00:50] [INFO ] Computation of co-enabling matrix(21/64) took 4104 ms. Total solver calls (SAT/UNSAT): 1059(1059/0)
[2020-05-15 04:00:53] [INFO ] Computation of co-enabling matrix(51/64) took 7120 ms. Total solver calls (SAT/UNSAT): 1770(1770/0)
[2020-05-15 04:00:54] [INFO ] Computation of Finished co-enabling matrix. took 7661 ms. Total solver calls (SAT/UNSAT): 1836(1836/0)
[2020-05-15 04:00:54] [INFO ] Computing Do-Not-Accords matrix : 64 transitions.
[2020-05-15 04:00:56] [INFO ] Computation of Completed DNA matrix. took 2712 ms. Total solver calls (SAT/UNSAT): 371(0/371)
[2020-05-15 04:00:56] [INFO ] Built C files in 12753ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Compilation finished in 1586 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 47 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, ( X(( <>(X(<>((LTLAP0==true)))) ) && ( <>((LTLAP1==true)) ))) || ( []((LTLAP2==true))) , --buchi-type=spotba], workingDir=/home/mcc/execution]
/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc: error while loading shared libraries: libltdl.so.7: cannot open shared object file: No such file or directory
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, ( X(( <>(X(<>((LTLAP0==true)))) ) && ( <>((LTLAP1==true)) ))) || ( []((LTLAP2==true))) , --buchi-type=spotba], workingDir=/home/mcc/execution]
127
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, ( X(( <>(X(<>((LTLAP0==true)))) ) && ( <>((LTLAP1==true)) ))) || ( []((LTLAP2==true))) , --buchi-type=spotba], workingDir=/home/mcc/execution]
127
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:170)
at fr.lip6.move.gal.application.LTSminRunner.access$10(LTSminRunner.java:124)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:93)
at java.base/java.lang.Thread.run(Thread.java:834)
Detected timeout of ITS tools.
[2020-05-15 04:20:45] [INFO ] Flatten gal took : 17 ms
[2020-05-15 04:20:45] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 10 ms
[2020-05-15 04:20:45] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ltl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 14 LTL properties
Checking formula 0 : !(((X((F(X(F("((KdStarGStarP3kStarP3P2>=1)||((KdStar>=1)&&(Pg>=1)))"))))&&(F("(KdStarGStarP3>=1)"))))||(G("((KdStar<1)||(Pg<1))"))))
Formula 0 simplified : !(X(FXF"((KdStarGStarP3kStarP3P2>=1)||((KdStar>=1)&&(Pg>=1)))" & F"(KdStarGStarP3>=1)") | G"((KdStar<1)||(Pg<1))")
Detected timeout of ITS tools.
[2020-05-15 04:40:47] [INFO ] Flatten gal took : 11 ms
[2020-05-15 04:40:47] [INFO ] Input system was already deterministic with 64 transitions.
[2020-05-15 04:40:47] [INFO ] Transformed 39 places.
[2020-05-15 04:40:47] [INFO ] Transformed 64 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2020-05-15 04:40:47] [INFO ] Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 1 ms
[2020-05-15 04:40:47] [INFO ] Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ltl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Read 14 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !(((X((F(X(F("((KdStarGStarP3kStarP3P2>=1)||((KdStar>=1)&&(Pg>=1)))"))))&&(F("(KdStarGStarP3>=1)"))))||(G("((KdStar<1)||(Pg<1))"))))
Formula 0 simplified : !(X(FXF"((KdStarGStarP3kStarP3P2>=1)||((KdStar>=1)&&(Pg>=1)))" & F"(KdStarGStarP3>=1)") | G"((KdStar<1)||(Pg<1))")
BK_TIME_CONFINEMENT_REACHED
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-25, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r006-smll-158897515900358"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
if [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "UpperBounds" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] || [ "LTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
elif [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;