Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r189-csrt-155225079800033.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
..................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstoolsm
Input is Angiogenesis-PT-15, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r189-csrt-155225079800033
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.8K Feb 9 06:49 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K Feb 9 06:49 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Feb 5 03:33 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 5 03:33 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 105 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 343 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.7K Feb 4 22:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K Feb 4 22:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:32 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.6K Feb 4 22:32 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.5K Feb 2 00:15 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 2 00:15 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Jan 29 11:28 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K Jan 29 11:28 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:18 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 4 22:18 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 3 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 33K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-00
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-01
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-02
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-03
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-04
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-05
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-06
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-07
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-08
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-09
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-10
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-11
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-12
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-13
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-14
FORMULA_NAME Angiogenesis-PT-15-LTLCardinality-15

=== Now, execution of the tool begins

BK_START 1553581383769

Working with output stream class java.io.PrintStream
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord
Read 16 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !((G(X(("(P3k>=3)")U("(KdStarGStarP3kStarP2<=KdStarGP3)")))))
Formula 0 simplified : !GX("(P3k>=3)" U "(KdStarGStarP3kStarP2<=KdStarGP3)")
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 64 rows 39 cols
invariant :GStarP3kP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + P3k = 15
invariant :Pten + PtP2 + PtP3 + PtP3P2 = 15
invariant :Akt + AktP3 + AktStar = 15
invariant :DAGE + Enz = 15
invariant :Gab1 + GP3 + GStarP3 + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + -1'KdStarPg + -1'KdStarPgStar + -1'KdStarPgStarP2 + -1'P3k + -1'Pg = -15
invariant :GStarPgP3 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 + Pg = 15
invariant :KdStar + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 = 15
invariant :AktP3 + DAG + -1'Enz + -1'Gab1 + -1'KdStarG + -1'KdStarGStar + -1'KdStarGStarP3k + -1'KdStarGStarP3kStar + KdStarGStarP3kStarP3P2 + -1'KdStarGStarPg + -1'KdStarGStarPgStar + KdStarGStarPgStarP3P2 + KdStarPgStarP2 + Pip2 + Pip3 + PtP2 + PtP3 + 2'PtP3P2 = -15
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Compilation finished in 1308 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 53 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](X(((LTLAP0==true))U((LTLAP1==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 484 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-00 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(([]((LTLAP2==true)))U((LTLAP3==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 253 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-01 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](<>(X(X((LTLAP4==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 1827 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-02 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X([](((LTLAP5==true))U((LTLAP6==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 106 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-03 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X((LTLAP7==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 142 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-04 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>(<>(X(<>((LTLAP8==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 319 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-05 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, (((LTLAP9==true))U((LTLAP10==true)))U(<>((LTLAP11==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 208 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-06 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, false, --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 293 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-07 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, []((LTLAP12==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 199 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-08 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(X((LTLAP13==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 1577 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-09 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X((LTLAP14==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 756 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-10 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, ((LTLAP15==true))U((LTLAP16==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 958 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-11 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](<>(<>(X((LTLAP17==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 534 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-12 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>([](<>(X((LTLAP18==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 1148 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-13 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, <>(([]((LTLAP19==true)))U([]((LTLAP20==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, <>(([]((LTLAP19==true)))U([]((LTLAP20==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, <>(([]((LTLAP21==true)))U((LTLAP22==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 392 ms.
FORMULA Angiogenesis-PT-15-LTLCardinality-15 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Retrying LTSmin with larger timeout 1800 s
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, <>(([]((LTLAP19==true)))U([]((LTLAP20==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Reverse transition relation is NOT exact ! Due to transitions t12, t51, t57, t61, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
Computing Next relation with stutter on 256 deadlock states
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 1 LTL properties
Checking formula 0 : !((F((G("(PtP3<=KdStarGStarP3kP3)"))U(G("(GStarPgP3<=P3k)")))))
Formula 0 simplified : !F(G"(PtP3<=KdStarGStarP3kP3)" U G"(GStarPgP3<=P3k)")
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, <>(([]((LTLAP19==true)))U([]((LTLAP20==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
255
Reverse transition relation is NOT exact ! Due to transitions k2, k55, k60, k7, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
Computing Next relation with stutter on 256 deadlock states
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 1 LTL properties
Checking formula 0 : !((F((G("(PtP3<=KdStarGStarP3kP3)"))U(G("(GStarPgP3<=P3k)")))))
Formula 0 simplified : !F(G"(PtP3<=KdStarGStarP3kP3)" U G"(GStarPgP3<=P3k)")
Reverse transition relation is NOT exact ! Due to transitions k2, k55, k60, k7, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
Computing Next relation with stutter on 256 deadlock states

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 77 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Mar 26, 2019 6:23:06 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 8 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 86 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 26 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 39 places.
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 64 transitions.
Mar 26, 2019 6:23:06 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 2 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 1 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 8 place invariants in 25 ms
Mar 26, 2019 6:23:08 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 39 variables to be positive in 997 ms
Mar 26, 2019 6:23:08 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 64 transitions.
Mar 26, 2019 6:23:08 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/64 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:08 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:08 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 64 transitions.
Mar 26, 2019 6:23:08 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 11 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:17 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 64 transitions.
Mar 26, 2019 6:23:17 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(0/64) took 762 ms. Total solver calls (SAT/UNSAT): 59(59/0)
Mar 26, 2019 6:23:20 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(13/64) took 3803 ms. Total solver calls (SAT/UNSAT): 617(617/0)
Mar 26, 2019 6:23:23 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 6385 ms. Total solver calls (SAT/UNSAT): 1437(1437/0)
Mar 26, 2019 6:23:23 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 64 transitions.
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 2214 ms. Total solver calls (SAT/UNSAT): 371(0/371)
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 18740ms conformant to PINS in folder :/home/mcc/execution
Mar 26, 2019 6:43:07 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 107 ms
Mar 26, 2019 6:43:07 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 14 ms
Mar 26, 2019 6:43:07 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 1 ms
pins2lts-mc, 0.000: Registering PINS so language module
pins2lts-mc( 7/ 8), 0.000: library has no initializer
pins2lts-mc( 7/ 8), 0.000: loading model GAL
pins2lts-mc( 7/ 8), 0.001: completed loading model GAL
pins2lts-mc( 7/ 8), 0.003: LTL layer: formula: <>(([]((LTLAP19==true)))U([]((LTLAP20==true))))
pins2lts-mc( 7/ 8), 0.003: "<>(([]((LTLAP19==true)))U([]((LTLAP20==true))))" is not a file, parsing as formula...
pins2lts-mc( 7/ 8), 0.003: Using Spin LTL semantics
pins2lts-mc( 6/ 8), 0.006: library has no initializer
pins2lts-mc( 6/ 8), 0.006: loading model GAL
pins2lts-mc( 6/ 8), 0.007: completed loading model GAL
pins2lts-mc( 4/ 8), 0.008: library has no initializer
pins2lts-mc( 4/ 8), 0.008: loading model GAL
pins2lts-mc( 4/ 8), 0.009: completed loading model GAL
pins2lts-mc( 3/ 8), 0.011: library has no initializer
pins2lts-mc( 3/ 8), 0.011: loading model GAL
pins2lts-mc( 3/ 8), 0.011: completed loading model GAL
pins2lts-mc( 1/ 8), 0.013: library has no initializer
pins2lts-mc( 1/ 8), 0.013: loading model GAL
pins2lts-mc( 2/ 8), 0.013: library has no initializer
pins2lts-mc( 2/ 8), 0.013: loading model GAL
pins2lts-mc( 1/ 8), 0.013: completed loading model GAL
pins2lts-mc( 2/ 8), 0.013: completed loading model GAL
pins2lts-mc( 5/ 8), 0.013: library has no initializer
pins2lts-mc( 5/ 8), 0.015: loading model GAL
pins2lts-mc( 0/ 8), 0.015: Loading model from ./gal.so
pins2lts-mc( 0/ 8), 0.015: library has no initializer
pins2lts-mc( 0/ 8), 0.015: loading model GAL
pins2lts-mc( 5/ 8), 0.016: completed loading model GAL
pins2lts-mc( 0/ 8), 0.015: completed loading model GAL
pins2lts-mc( 0/ 8), 0.015: Initializing POR dependencies: labels 87, guards 64
pins2lts-mc( 0/ 8), 0.044: Forcing use of the an ignoring proviso (cndfs)
pins2lts-mc( 0/ 8), 0.081: There are 88 state labels and 1 edge labels
pins2lts-mc( 0/ 8), 0.081: State length is 40, there are 68 groups
pins2lts-mc( 0/ 8), 0.081: Running cndfs using 8 cores
pins2lts-mc( 0/ 8), 0.081: Using a tree table with 2^27 elements
pins2lts-mc( 0/ 8), 0.081: Successor permutation: dynamic
pins2lts-mc( 0/ 8), 0.081: Visible groups: 0 / 68, labels: 1 / 88
pins2lts-mc( 0/ 8), 0.081: POR cycle proviso: cndfs (ltl)
pins2lts-mc( 0/ 8), 0.081: Global bits: 2, count bits: 2, local bits: 0
pins2lts-mc( 7/ 8), 0.218: [Blue] ~119 levels ~960 states ~3848 transitions
pins2lts-mc( 7/ 8), 0.279: [Blue] ~235 levels ~1920 states ~6488 transitions
pins2lts-mc( 3/ 8), 0.504: [Blue] ~478 levels ~3840 states ~6832 transitions
pins2lts-mc( 3/ 8), 0.971: [Blue] ~958 levels ~7680 states ~11440 transitions
pins2lts-mc( 3/ 8), 1.553: [Blue] ~1903 levels ~15360 states ~21336 transitions
pins2lts-mc( 3/ 8), 2.648: [Blue] ~3818 levels ~30720 states ~42432 transitions
pins2lts-mc( 1/ 8), 4.472: [Blue] ~7664 levels ~61440 states ~89968 transitions
pins2lts-mc( 7/ 8), 7.377: [Blue] ~15196 levels ~122880 states ~303608 transitions
pins2lts-mc( 1/ 8), 11.296: [Blue] ~30640 levels ~245760 states ~370016 transitions
pins2lts-mc( 1/ 8), 16.646: [Blue] ~61219 levels ~491520 states ~816248 transitions
pins2lts-mc( 1/ 8), 29.277: [Blue] ~122443 levels ~983040 states ~1930576 transitions
pins2lts-mc( 4/ 8), 53.881: [Blue] ~245058 levels ~1966080 states ~7311360 transitions
pins2lts-mc( 6/ 8), 92.703: [Blue] ~488398 levels ~3932160 states ~8586184 transitions
pins2lts-mc( 6/ 8), 187.289: [Blue] ~977102 levels ~7864320 states ~17754448 transitions
pins2lts-mc( 6/ 8), 381.403: [Blue] ~1955340 levels ~15728640 states ~35697536 transitions
pins2lts-mc( 6/ 8), 703.548: [Blue] ~3913239 levels ~31457280 states ~70938616 transitions
pins2lts-mc( 6/ 8), 959.539: Error: tree leafs table full! Change -s/--ratio.
pins2lts-mc( 0/ 8), 959.630:
pins2lts-mc( 0/ 8), 959.638: Explored 39567614 states 80683957 transitions, fanout: 2.039
pins2lts-mc( 0/ 8), 959.638: Total exploration time 959.520 sec (959.430 sec minimum, 959.472 sec on average)
pins2lts-mc( 0/ 8), 959.638: States per second: 41237, Transitions per second: 84088
pins2lts-mc( 0/ 8), 959.638:
pins2lts-mc( 0/ 8), 959.638: State space has 85471273 states, 0 are accepting
pins2lts-mc( 0/ 8), 959.638: cndfs_1 (permutation: dynamic) stats:
pins2lts-mc( 0/ 8), 959.638: blue states: 39567614 (46.29%), transitions: 0 (per worker)
pins2lts-mc( 0/ 8), 959.638: red states: 0 (0.00%), bogus: 0 (0.00%), transitions: 0, waits: 0 (0.00 sec)
pins2lts-mc( 0/ 8), 959.638: all-red states: 0 (0.00%), bogus 0 (0.00%)
pins2lts-mc( 0/ 8), 959.638:
pins2lts-mc( 0/ 8), 959.638: Total memory used for local state coloring: 599.5MB
pins2lts-mc( 0/ 8), 959.638:
pins2lts-mc( 0/ 8), 959.638: Queue width: 8B, total height: 39291673, memory: 299.77MB
pins2lts-mc( 0/ 8), 959.638: Tree memory: 908.1MB, 11.1 B/state, compr.: 6.9%
pins2lts-mc( 0/ 8), 959.638: Tree fill ratio (roots/leafs): 63.0%/99.0%
pins2lts-mc( 0/ 8), 959.638: Stored 64 string chucks using 0MB
pins2lts-mc( 0/ 8), 959.638: Total memory used for chunk indexing: 0MB
pins2lts-mc( 0/ 8), 959.638: Est. total memory use: 1207.9MB (~1323.8MB paged-in)
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, <>(([]((LTLAP19==true)))U([]((LTLAP20==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
255
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:168)
at fr.lip6.move.gal.application.LTSminRunner.access$9(LTSminRunner.java:122)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:98)
at java.lang.Thread.run(Thread.java:748)
Mar 26, 2019 7:03:07 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 23 ms
Mar 26, 2019 7:03:07 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 8 ms
Mar 26, 2019 7:03:07 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 0 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstoolsm"
echo " Input is Angiogenesis-PT-15, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r189-csrt-155225079800033"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
if [ "LTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "LTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;