fond
Model Checking Contest 2019
9th edition, Prague, Czech Republic, April 7, 2019 (TOOLympics)
Execution of r189-csrt-155225079800012
Last Updated
Apr 15, 2019

About the Execution of ITS-Tools.M for Angiogenesis-PT-05

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
1380.220 16461.00 22745.00 121.70 T normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r189-csrt-155225079800012.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
....................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstoolsm
Input is Angiogenesis-PT-05, examination is GlobalProperties
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r189-csrt-155225079800012
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 4.3K Feb 9 06:49 CTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Feb 9 06:49 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 5 03:33 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K Feb 5 03:33 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 105 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 343 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.6K Feb 4 22:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K Feb 4 22:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:32 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.3K Feb 4 22:32 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.6K Feb 2 00:14 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 2 00:14 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Jan 29 11:28 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K Jan 29 11:28 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:18 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 4 22:18 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col

-rw-r--r-- 1 mcc users 3 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 33K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-GlobalProperties-0

=== Now, execution of the tool begins

BK_START 1553581364736

Working with output stream class java.io.PrintStream
Flatten gal took : 97 ms
Constant places removed 1 places and 0 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Performed 1 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 1 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Constant places removed 2 places and 0 transitions.
Iterating post reduction 1 with 2 rules applied. Total rules applied 3 place count 36 transition count 63
Performed 10 Post agglomeration using F-continuation condition.
Constant places removed 10 places and 0 transitions.
Iterating post reduction 2 with 10 rules applied. Total rules applied 13 place count 26 transition count 53
Performed 5 Post agglomeration using F-continuation condition.
Constant places removed 5 places and 0 transitions.
Iterating post reduction 3 with 5 rules applied. Total rules applied 18 place count 21 transition count 59
Applied a total of 18 rules in 16 ms. Remains 21 /39 variables (removed 18) and now considering 59/64 (removed 5) transitions.
Random walk for 250 k steps run took 1644 ms.
Normalized transition count is 38
// Phase 1: matrix 38 rows 21 cols
Random walk for 4 * 500 k steps run took 9865 ms.
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/GlobalProperties.pnml.gal, -t, CGAL, -ctl, DEADLOCK, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.

its-ctl command run as :
Normalized transition count is 38
// Phase 1: matrix 38 rows 21 cols

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/GlobalProperties.pnml.gal -t CGAL -ctl DEADLOCK --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
invariant :-1'Gab1 + -1'GP3 + -1'GStarP3 + KdStar + KdStarGStarP3kStar + KdStarGStarP3kStarP3 + KdStarGStarPgStar + KdStarGStarPgStarP3 + 2'KdStarPgStar + P3k + Pg = 10
invariant :Gab1 + GP3 + GStarP3 + KdStarGStar + KdStarGStarP3 + -1'KdStarPgStar + -1'P3k + -1'Pg = -5
invariant :DAG + -1'Gab1 + -1'KdStarGStar + -1'KdStarGStarP3kStar + -1'KdStarGStarPgStar + Pip2 + Pip3 + PtP2 = 0
invariant :Pten + PtP2 = 5
invariant :GStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP3 + P3k = 5
invariant :GStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP3 + KdStarPgStar + Pg = 5
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,592794,0.617498,22108,2,2912,5,92490,6,0,144,78425,0


Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
dead,36,0.81567,22108,2,77,7,92490,9,1,720,78425,2

System contains 36 deadlocks (shown below if less than --print-limit option) !
FORMULA Angiogenesis-PT-05-GlobalProperties-0 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
[ 36 states ] showing 10 first states
[ KdStarGStarPgStarP3=5 P3k=5 Pten=5 ]
[ KdStarGStarPgStarP3=5 P3k=5 Pten=5 Akt=1 ]
[ KdStarGStarPgStarP3=5 P3k=5 Pten=5 Akt=2 ]
[ KdStarGStarPgStarP3=5 P3k=5 Pten=5 Akt=3 ]
[ KdStarGStarPgStarP3=5 P3k=5 Pten=5 Akt=4 ]
[ KdStarGStarPgStarP3=5 P3k=5 Pten=5 Akt=5 ]
[ Pg=1 KdStarGStarPgStarP3=4 P3k=4 KdStarGStarP3kStarP3=1 Pten=5 ]
[ Pg=1 KdStarGStarPgStarP3=4 P3k=4 KdStarGStarP3kStarP3=1 Pten=5 Akt=1 ]
[ Pg=1 KdStarGStarPgStarP3=4 P3k=4 KdStarGStarP3kStarP3=1 Pten=5 Akt=2 ]
[ Pg=1 KdStarGStarPgStarP3=4 P3k=4 KdStarGStarP3kStarP3=1 Pten=5 Akt=3 ]
ITS tools runner thread asked to quit. Dying gracefully.
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1553581381197

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ GlobalProperties = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution GlobalProperties -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination GlobalProperties -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, GlobalProperties, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 69 ms
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Mar 26, 2019 6:22:47 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 14 ms
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.instantiate.PropertySimplifier evalInInitialState
WARNING: Unexpected boolean logic operator in evalInInitialState fr.lip6.move.gal.impl.EXImpl
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-05-GlobalProperties-0 is trivially true : it is verified in initial state.
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 91 ms
Mar 26, 2019 6:22:47 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 3 ms
Mar 26, 2019 6:22:47 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
Mar 26, 2019 6:22:59 AM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-05-GlobalProperties-0 is trivially true : it is verified in initial state.
Mar 26, 2019 6:22:59 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 28 ms
Mar 26, 2019 6:22:59 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 59 transitions.
Mar 26, 2019 6:22:59 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 21 places.
Mar 26, 2019 6:22:59 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 59 transitions.
Mar 26, 2019 6:22:59 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 59 transitions.
Mar 26, 2019 6:22:59 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/GlobalProperties.pnml.gal : 2 ms
Mar 26, 2019 6:22:59 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 6 place invariants in 9 ms
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 21 variables to be positive in 538 ms
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 59 transitions.
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/59 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 59 transitions.
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 59 transitions.
Skipping mayMatrices nes/nds SMT solver raised an exception on push().
java.lang.RuntimeException: SMT solver raised an exception on push().
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.computeCoEnablingMatrix(NecessaryEnablingsolver.java:464)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:530)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
Mar 26, 2019 6:23:00 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 1095ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="GlobalProperties"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstoolsm"
echo " Input is Angiogenesis-PT-05, examination is GlobalProperties"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r189-csrt-155225079800012"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution
cd execution
if [ "GlobalProperties" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "GlobalProperties" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "GlobalProperties" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "GlobalProperties" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "GlobalProperties.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property GlobalProperties.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "GlobalProperties.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' GlobalProperties.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;