Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r203-csrt-155344537800223.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstoolsm
Input is FamilyReunion-PT-L00200M0020C010P010G005, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r203-csrt-155344537800223
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 118M
-rw-r--r-- 1 mcc users 3.8K Mar 24 07:06 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K Mar 24 07:06 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.9K Mar 24 06:57 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K Mar 24 06:57 CTLFireability.xml
-rw-r--r-- 1 mcc users 2.6K Mar 24 06:51 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.5K Mar 24 06:51 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Mar 24 06:49 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.1K Mar 24 06:48 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 Mar 24 00:18 NewModel
-rw-r--r-- 1 mcc users 4.9K Mar 24 06:40 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K Mar 24 06:40 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 131 Mar 24 06:28 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 369 Mar 24 06:28 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.9K Mar 24 06:32 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K Mar 24 06:31 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K Mar 24 06:47 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.1K Mar 24 06:46 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 Mar 24 00:18 equiv_col
-rw-r--r-- 1 mcc users 24 Mar 24 00:18 instance
-rw-r--r-- 1 mcc users 6 Mar 24 00:18 iscolored
-rw-r--r-- 1 mcc users 118M Mar 24 00:18 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-00
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-01
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-02
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-03
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-04
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-05
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-06
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-07
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-08
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-09
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-10
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-11
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-12
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-13
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-14
FORMULA_NAME FamilyReunion-PT-L00200M0020C010P010G005-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1553842277578

Working with output stream class java.io.PrintStream
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Could not compile executable .CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Order computation with GreatSPN timed out. Skipping.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((false))
Formula 0 simplified : 1
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((false))
Formula 0 simplified : 1
Detected timeout of ITS tools.
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201903251645/bin/convert-linux64, -i, /tmp/graph5438940465262151614.txt, -o, /tmp/graph5438940465262151614.bin, -w, /tmp/graph5438940465262151614.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201903251645/bin/louvain-linux64, /tmp/graph5438940465262151614.bin, -l, -1, -v, -w, /tmp/graph5438940465262151614.weights, -q, 0, -e, 0.001], workingDir=null]

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 29, 2019 6:51:19 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 29, 2019 6:51:19 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 29, 2019 6:51:23 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 3710 ms
Mar 29, 2019 6:51:25 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 143908 places.
Mar 29, 2019 6:51:27 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 134279 transitions.
Mar 29, 2019 6:51:42 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 56 fixed domain variables (out of 143908 variables) in GAL type FamilyReunion_PT_L00200M0020C010P010G005
Mar 29, 2019 6:51:42 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 56 constant array cells/variables (out of 143908 variables) in type FamilyReunion_PT_L00200M0020C010P010G005
Mar 29, 2019 6:51:42 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: p0_9,c0_0,m0_10,c0_2,m0_2,c2_3,m0_19,m0_9,p0_1,p0_6,c2_7,m0_3,r0_N,p0_4,c2_8,c2_1,m0_18,p0_0,p0_8,c2_9,p0_7,c0_5,m0_20,c0_4,p0_10,c0_3,m0_0,m0_14,c0_10,m0_6,m0_12,m0_4,m0_5,c2_6,c2_4,c2_5,c2_0,p0_5,c0_1,m0_1,p0_3,c2_2,p0_2,m0_13,m0_8,r0_Y,c0_9,m0_15,m0_11,c2_10,c0_6,c0_7,m0_16,m0_7,c0_8,m0_17,
Mar 29, 2019 6:51:43 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 56 constant variables :p0_9=1, c0_0=1, m0_10=1, c0_2=1, m0_2=1, c2_3=1, m0_19=1, m0_9=1, p0_1=1, p0_6=1, c2_7=1, m0_3=1, r0_N=1, p0_4=1, c2_8=1, c2_1=1, m0_18=1, p0_0=1, p0_8=1, c2_9=1, p0_7=1, c0_5=1, m0_20=1, c0_4=1, p0_10=1, c0_3=1, m0_0=1, m0_14=1, c0_10=1, m0_6=1, m0_12=1, m0_4=1, m0_5=1, c2_6=1, c2_4=1, c2_5=1, c2_0=1, p0_5=1, c0_1=1, m0_1=1, p0_3=1, c2_2=1, p0_2=1, m0_13=1, m0_8=1, r0_Y=1, c0_9=1, m0_15=1, m0_11=1, c2_10=1, c0_6=1, c0_7=1, m0_16=1, m0_7=1, c0_8=1, m0_17=1
Mar 29, 2019 6:51:43 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 13267 expressions due to constant valuations.
Mar 29, 2019 6:51:47 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 19863 ms
Mar 29, 2019 6:52:09 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 134279 transitions.
Mar 29, 2019 6:52:09 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (134279) to apply POR reductions. Disabling POR matrices.
Mar 29, 2019 6:53:10 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 67069 ms
Mar 29, 2019 6:53:15 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 82037ms conformant to PINS in folder :/home/mcc/execution
Mar 29, 2019 6:53:17 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 134279 transitions.
Mar 29, 2019 6:53:18 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 143852 places.
Mar 29, 2019 6:53:19 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 134279 transitions.
virtual memory exhausted: Cannot allocate memory
java.lang.RuntimeException: Could not compile executable .CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
at fr.lip6.move.gal.application.LTSminRunner.compilePINS(LTSminRunner.java:242)
at fr.lip6.move.gal.application.LTSminRunner.access$6(LTSminRunner.java:225)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:75)
at java.lang.Thread.run(Thread.java:748)
Mar 29, 2019 6:54:29 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 536 ms
Mar 29, 2019 6:54:29 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 3 ms
Mar 29, 2019 7:14:42 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 9689 ms
Mar 29, 2019 7:14:42 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 518 ms
Mar 29, 2019 7:14:42 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 13 ms
Mar 29, 2019 7:34:42 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Mar 29, 2019 7:34:52 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 9790 ms
Mar 29, 2019 7:35:01 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 9365 ms
Begin: Fri Mar 29 07:35:38 2019

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri Mar 29 07:35:39 2019
network size: 143852 nodes, 472796 links, 268558 weight
quality increased from -5.40841e-05 to 0.511182
end computation: Fri Mar 29 07:35:39 2019
level 1:
start computation: Fri Mar 29 07:35:39 2019
network size: 44358 nodes, 296767 links, 268558 weight
quality increased from 0.511182 to 0.762359
end computation: Fri Mar 29 07:35:40 2019
level 2:
start computation: Fri Mar 29 07:35:40 2019
network size: 7767 nodes, 89508 links, 268558 weight
quality increased from 0.762359 to 0.902756
end computation: Fri Mar 29 07:35:40 2019
level 3:
start computation: Fri Mar 29 07:35:40 2019
network size: 442 nodes, 9746 links, 268558 weight
quality increased from 0.902756 to 0.906172
end computation: Fri Mar 29 07:35:40 2019
level 4:
start computation: Fri Mar 29 07:35:40 2019
network size: 308 nodes, 1520 links, 268558 weight
quality increased from 0.906172 to 0.910595
end computation: Fri Mar 29 07:35:40 2019
End: Fri Mar 29 07:35:40 2019
Total duration: 2 sec
0.910595
Mar 29, 2019 7:35:44 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
Mar 29, 2019 7:38:38 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="FamilyReunion-PT-L00200M0020C010P010G005"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstoolsm"
echo " Input is FamilyReunion-PT-L00200M0020C010P010G005, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r203-csrt-155344537800223"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/FamilyReunion-PT-L00200M0020C010P010G005.tgz
mv FamilyReunion-PT-L00200M0020C010P010G005 execution
cd execution
if [ "LTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "LTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;