Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r196-smll-155246587400299.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstoolsm
Input is MAPK-PT-00640, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r196-smll-155246587400299
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.9K Feb 11 22:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 11 22:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Feb 7 23:38 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 7 23:38 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 95 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 333 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.4K Feb 5 00:13 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K Feb 5 00:13 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.3K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.3K Feb 4 06:25 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K Feb 4 06:25 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.8K Jan 31 23:58 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K Jan 31 23:58 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.5K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 25K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT--UpperBounds-00
FORMULA_NAME MAPK-PT--UpperBounds-01
FORMULA_NAME MAPK-PT--UpperBounds-02
FORMULA_NAME MAPK-PT--UpperBounds-03
FORMULA_NAME MAPK-PT--UpperBounds-04
FORMULA_NAME MAPK-PT--UpperBounds-05
FORMULA_NAME MAPK-PT--UpperBounds-06
FORMULA_NAME MAPK-PT--UpperBounds-07
FORMULA_NAME MAPK-PT--UpperBounds-08
FORMULA_NAME MAPK-PT--UpperBounds-09
FORMULA_NAME MAPK-PT--UpperBounds-10
FORMULA_NAME MAPK-PT--UpperBounds-11
FORMULA_NAME MAPK-PT--UpperBounds-12
FORMULA_NAME MAPK-PT--UpperBounds-13
FORMULA_NAME MAPK-PT--UpperBounds-14
FORMULA_NAME MAPK-PT--UpperBounds-15

=== Now, execution of the tool begins

BK_START 1553746106326

Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
Loading property file UpperBounds.prop.
Read [bounds] property : MAPK-PT--UpperBounds-00 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-01 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-02 with value :RafP
Read [bounds] property : MAPK-PT--UpperBounds-03 with value :ERKPP_Phase3
Read [bounds] property : MAPK-PT--UpperBounds-04 with value :ERK
Read [bounds] property : MAPK-PT--UpperBounds-05 with value :RasGTP
Read [bounds] property : MAPK-PT--UpperBounds-06 with value :ERKPP
Read [bounds] property : MAPK-PT--UpperBounds-07 with value :Phase2
Read [bounds] property : MAPK-PT--UpperBounds-08 with value :MEK
Read [bounds] property : MAPK-PT--UpperBounds-09 with value :Raf
Read [bounds] property : MAPK-PT--UpperBounds-10 with value :Phase1
Read [bounds] property : MAPK-PT--UpperBounds-11 with value :MEKP
Read [bounds] property : MAPK-PT--UpperBounds-12 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-13 with value :ERKP_Phase3
Read [bounds] property : MAPK-PT--UpperBounds-14 with value :Phase1
Read [bounds] property : MAPK-PT--UpperBounds-15 with value :ERKP
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : MAPK-PT--UpperBounds-00 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-01 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-02 with value :RafP
Read [bounds] property : MAPK-PT--UpperBounds-03 with value :ERKPP_Phase3
Read [bounds] property : MAPK-PT--UpperBounds-04 with value :ERK
Read [bounds] property : MAPK-PT--UpperBounds-05 with value :RasGTP
Read [bounds] property : MAPK-PT--UpperBounds-06 with value :ERKPP
Read [bounds] property : MAPK-PT--UpperBounds-07 with value :Phase2
Read [bounds] property : MAPK-PT--UpperBounds-08 with value :MEK
Read [bounds] property : MAPK-PT--UpperBounds-09 with value :Raf
Read [bounds] property : MAPK-PT--UpperBounds-10 with value :Phase1
Read [bounds] property : MAPK-PT--UpperBounds-11 with value :MEKP
Read [bounds] property : MAPK-PT--UpperBounds-12 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-13 with value :ERKP_Phase3
Read [bounds] property : MAPK-PT--UpperBounds-14 with value :Phase1
Read [bounds] property : MAPK-PT--UpperBounds-15 with value :ERKP
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : MAPK-PT--UpperBounds-00 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-01 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-02 with value :RafP
Read [bounds] property : MAPK-PT--UpperBounds-03 with value :ERKPP_Phase3
Read [bounds] property : MAPK-PT--UpperBounds-04 with value :ERK
Read [bounds] property : MAPK-PT--UpperBounds-05 with value :RasGTP
Read [bounds] property : MAPK-PT--UpperBounds-06 with value :ERKPP
Read [bounds] property : MAPK-PT--UpperBounds-07 with value :Phase2
Read [bounds] property : MAPK-PT--UpperBounds-08 with value :MEK
Read [bounds] property : MAPK-PT--UpperBounds-09 with value :Raf
Read [bounds] property : MAPK-PT--UpperBounds-10 with value :Phase1
Read [bounds] property : MAPK-PT--UpperBounds-11 with value :MEKP
Read [bounds] property : MAPK-PT--UpperBounds-12 with value :MEKP_RafP
Read [bounds] property : MAPK-PT--UpperBounds-13 with value :ERKP_Phase3
Read [bounds] property : MAPK-PT--UpperBounds-14 with value :Phase1
Read [bounds] property : MAPK-PT--UpperBounds-15 with value :ERKP

BK_STOP 1553749681385

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 28, 2019 4:08:29 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 28, 2019 4:08:29 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 28, 2019 4:08:29 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 56 ms
Mar 28, 2019 4:08:29 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Mar 28, 2019 4:08:29 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Mar 28, 2019 4:08:29 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 13 ms
Mar 28, 2019 4:08:29 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 58 ms
Mar 28, 2019 4:08:30 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30 transitions.
Mar 28, 2019 4:08:30 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 22 places.
Mar 28, 2019 4:08:30 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 30 transitions.
Mar 28, 2019 4:08:30 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 2 ms
Mar 28, 2019 4:08:30 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
Mar 28, 2019 4:28:30 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 12 ms
Mar 28, 2019 4:28:30 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 1 ms
Mar 28, 2019 4:28:30 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 0 ms
ITS-tools command line returned an error code 137
Mar 28, 2019 4:48:07 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Mar 28, 2019 4:48:07 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 15 ms
Mar 28, 2019 4:48:07 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 14 ms
Mar 28, 2019 4:48:07 AM fr.lip6.move.gal.application.MccTranslator applyOrder
WARNING: Could not apply decomposition. Using flat GAL structure.
java.lang.NullPointerException
at fr.lip6.move.gal.application.MccTranslator.applyOrder(MccTranslator.java:128)
at fr.lip6.move.gal.application.MccTranslator.flattenSpec(MccTranslator.java:156)
at fr.lip6.move.gal.application.Application.runMultiITS(Application.java:427)
at fr.lip6.move.gal.application.Application.start(Application.java:237)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:40)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:137)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:107)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:595)
at org.eclipse.equinox.launcher.Main.run(Main.java:1501)
at org.eclipse.equinox.launcher.Main.main(Main.java:1474)
Mar 28, 2019 4:48:07 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 13 ms
Mar 28, 2019 4:48:07 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 6 ms
Mar 28, 2019 4:48:07 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 0 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00640"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstoolsm"
echo " Input is MAPK-PT-00640, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r196-smll-155246587400299"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00640.tgz
mv MAPK-PT-00640 execution
cd execution
if [ "UpperBounds" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "UpperBounds" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;