Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r196-smll-155246587400274.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstoolsm
Input is MAPK-PT-00080, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r196-smll-155246587400274
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 4.8K Feb 11 22:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 28K Feb 11 22:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 7 23:38 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K Feb 7 23:38 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 100 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 338 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.5K Feb 5 00:12 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K Feb 5 00:12 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.8K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Feb 4 06:24 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 4 06:24 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Jan 31 23:57 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 21K Jan 31 23:57 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 25K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00080-CTLCardinality-00
FORMULA_NAME MAPK-PT-00080-CTLCardinality-01
FORMULA_NAME MAPK-PT-00080-CTLCardinality-02
FORMULA_NAME MAPK-PT-00080-CTLCardinality-03
FORMULA_NAME MAPK-PT-00080-CTLCardinality-04
FORMULA_NAME MAPK-PT-00080-CTLCardinality-05
FORMULA_NAME MAPK-PT-00080-CTLCardinality-06
FORMULA_NAME MAPK-PT-00080-CTLCardinality-07
FORMULA_NAME MAPK-PT-00080-CTLCardinality-08
FORMULA_NAME MAPK-PT-00080-CTLCardinality-09
FORMULA_NAME MAPK-PT-00080-CTLCardinality-10
FORMULA_NAME MAPK-PT-00080-CTLCardinality-11
FORMULA_NAME MAPK-PT-00080-CTLCardinality-12
FORMULA_NAME MAPK-PT-00080-CTLCardinality-13
FORMULA_NAME MAPK-PT-00080-CTLCardinality-14
FORMULA_NAME MAPK-PT-00080-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1553724203501

Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,5.6349e+18,22.0617,292420,2,100033,5,1.51543e+06,6,0,121,1.57429e+06,0


Converting to forward existential form...Done !
original formula: E((ERK>=3) U (ERKP_MEKPP>=3))
=> equivalent forward existential formula: [(FwdU(Init,(ERK>=3)) * (ERKP_MEKPP>=3))] != FALSE
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 0,1,42.0966,341640,1,0,10,1.78091e+06,15,1,1271,1.81752e+06,4
FORMULA MAPK-PT-00080-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E(EG((RafP<=MEKP)) U !((ERK>=1)))
=> equivalent forward existential formula: [(FwdU(Init,EG((RafP<=MEKP))) * !((ERK>=1)))] != FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 1,0,75.2743,882700,1,0,55,4.94103e+06,32,46,1739,4.84688e+06,77
FORMULA MAPK-PT-00080-CTLCardinality-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(!(AX((Phase2<=MEKP))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(!((Phase2<=MEKP)))))] = FALSE
(forward)formula 2,0,76.0936,896428,1,0,58,4.98019e+06,34,48,1821,4.88371e+06,79
FORMULA MAPK-PT-00080-CTLCardinality-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(!((Raf<=MEKP_RafP)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (Raf<=MEKP_RafP))] = FALSE
(forward)formula 3,0,78.5359,971404,1,0,60,5.07295e+06,35,49,1904,4.9794e+06,80
FORMULA MAPK-PT-00080-CTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E(AG((MEK_RafP<=RasGTP)) U AG((MEKP_RafP>=3)))
=> equivalent forward existential formula: [(FwdU(Init,!(E(TRUE U !((MEK_RafP<=RasGTP))))) * !(E(TRUE U !((MEKP_RafP>=3)))))] != FALSE
(forward)formula 4,0,79.7492,981436,1,0,61,5.1343e+06,41,49,1932,5.01968e+06,83
FORMULA MAPK-PT-00080-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(E((Raf>=2) U (MEKP_Phase2<=ERKP)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E((Raf>=2) U (MEKP_Phase2<=ERKP))))] = FALSE
Hit Full ! (commute/partial/dont) 27/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
Hit Full ! (commute/partial/dont) 0/0/3
(forward)formula 5,0,123.936,1379020,1,0,65,7.02834e+06,49,51,2088,7.0924e+06,87
FORMULA MAPK-PT-00080-CTLCardinality-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((AX((ERKP>=2)) + !(AG((ERK>=1)))) + E(((MEKP<=ERKPP_Phase3)||(MEKP>=3)) U !((Phase1>=2))))
=> equivalent forward existential formula: [(EY(((Init * !(E(((MEKP<=ERKPP_Phase3)||(MEKP>=3)) U !((Phase1>=2))))) * !(!(!(E(TRUE U !((ERK>=1)))))))) * !((ERKP>=2)))] = FALSE
(forward)formula 6,1,124.925,1391164,1,0,67,7.08391e+06,51,52,2090,7.14413e+06,91
FORMULA MAPK-PT-00080-CTLCardinality-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !((E((ERKP_Phase3<=Raf_RasGTP) U (ERKP_MEKPP>=2)) + AG((RafP>=1))))
=> equivalent forward existential formula: [(FwdU((Init * !(E((ERKP_Phase3<=Raf_RasGTP) U (ERKP_MEKPP>=2)))),TRUE) * !((RafP>=1)))] != FALSE
Hit Full ! (commute/partial/dont) 24/0/6
(forward)formula 7,0,423.801,5073480,1,0,74,3.15775e+07,61,55,2247,3.34676e+07,96
FORMULA MAPK-PT-00080-CTLCardinality-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E((((MEKP_RafP>=2)||(Phase1>=1))&&((RasGTP>=2)||(ERK>=1))) U ((!(MEK_RafP<=Raf))&&(!(MEK_RafP<=ERKPP))))
=> equivalent forward existential formula: [(FwdU(Init,(((MEKP_RafP>=2)||(Phase1>=1))&&((RasGTP>=2)||(ERK>=1)))) * ((!(MEK_RafP<=Raf))&&(!(MEK_RafP<=ERKPP))))] != FALSE
Hit Full ! (commute/partial/dont) 18/7/12
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 8 CTL formulae.
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 8 CTL formulae.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 27, 2019 10:03:25 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 27, 2019 10:03:25 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 27, 2019 10:03:25 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 40 ms
Mar 27, 2019 10:03:25 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Mar 27, 2019 10:03:25 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Mar 27, 2019 10:03:26 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 8 ms
Mar 27, 2019 10:03:26 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 47 ms
Mar 27, 2019 10:03:26 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30 transitions.
Mar 27, 2019 10:03:26 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 22 places.
Mar 27, 2019 10:03:26 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 30 transitions.
Mar 27, 2019 10:03:26 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 2 ms
Mar 27, 2019 10:03:26 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 6 ms
Mar 27, 2019 10:23:26 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 12 ms
Mar 27, 2019 10:23:26 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 2 ms
Mar 27, 2019 10:23:26 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms
Mar 27, 2019 10:43:27 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 17 ms
Mar 27, 2019 10:43:27 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 1 ms
Mar 27, 2019 10:43:27 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00080"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstoolsm"
echo " Input is MAPK-PT-00080, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r196-smll-155246587400274"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00080.tgz
mv MAPK-PT-00080 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;