Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r196-smll-155246587400265.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstoolsm
Input is MAPK-PT-00040, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r196-smll-155246587400265
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 184K
-rw-r--r-- 1 mcc users 3.5K Feb 11 22:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K Feb 11 22:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K Feb 7 23:38 CTLFireability.txt
-rw-r--r-- 1 mcc users 12K Feb 7 23:38 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 100 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 338 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.1K Feb 5 00:12 LTLCardinality.txt
-rw-r--r-- 1 mcc users 8.2K Feb 5 00:12 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.3K Feb 4 06:24 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 15K Feb 4 06:24 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.8K Jan 31 23:57 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 19K Jan 31 23:57 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 25K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00040-CTLCardinality-00
FORMULA_NAME MAPK-PT-00040-CTLCardinality-01
FORMULA_NAME MAPK-PT-00040-CTLCardinality-02
FORMULA_NAME MAPK-PT-00040-CTLCardinality-03
FORMULA_NAME MAPK-PT-00040-CTLCardinality-04
FORMULA_NAME MAPK-PT-00040-CTLCardinality-05
FORMULA_NAME MAPK-PT-00040-CTLCardinality-06
FORMULA_NAME MAPK-PT-00040-CTLCardinality-07
FORMULA_NAME MAPK-PT-00040-CTLCardinality-08
FORMULA_NAME MAPK-PT-00040-CTLCardinality-09
FORMULA_NAME MAPK-PT-00040-CTLCardinality-10
FORMULA_NAME MAPK-PT-00040-CTLCardinality-11
FORMULA_NAME MAPK-PT-00040-CTLCardinality-12
FORMULA_NAME MAPK-PT-00040-CTLCardinality-13
FORMULA_NAME MAPK-PT-00040-CTLCardinality-14
FORMULA_NAME MAPK-PT-00040-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1553723087284

Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.78293e+14,1.88403,38560,2,15378,5,182889,6,0,121,188806,0


Converting to forward existential form...Done !
original formula: E(!((Phase2<=MEKP_RafP)) U FALSE)
=> equivalent forward existential formula: [(FwdU(Init,!((Phase2<=MEKP_RafP))) * FALSE)] != FALSE
(forward)formula 0,0,1.88494,38560,1,0,5,182889,7,0,121,188806,0
FORMULA MAPK-PT-00040-CTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(AG((ERKP<=Phase2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((ERKP<=Phase2)))] != FALSE
(forward)formula 1,1,2.09638,38560,1,0,8,182889,9,2,206,188806,1
FORMULA MAPK-PT-00040-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (E((ERKPP_Phase3>=1) U ((Phase3>=3)||(Phase2<=Raf_RasGTP))) * E(((Phase3>=2)||(ERKP<=RafP)) U !((Phase1>=2))))
=> equivalent forward existential formula: [(FwdU((Init * E((ERKPP_Phase3>=1) U ((Phase3>=3)||(Phase2<=Raf_RasGTP)))),((Phase3>=2)||(ERKP<=RafP))) * !((Phase1>=2)))] != FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
Hit Full ! (commute/partial/dont) 27/0/3
Hit Full ! (commute/partial/dont) 12/0/18
(forward)formula 2,1,326.419,4542300,1,0,15,2.23177e+07,28,5,1304,3.12997e+07,11
FORMULA MAPK-PT-00040-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (EF((ERKPP>=3)) + AG(((MEKP_RafP<=ERK_MEKPP)&&(MEK_RafP<=MEKP_Phase2))))
=> equivalent forward existential formula: [(FwdU((Init * !(E(TRUE U (ERKPP>=3)))),TRUE) * !(((MEKP_RafP<=ERK_MEKPP)&&(MEK_RafP<=MEKP_Phase2))))] = FALSE
(forward)formula 3,1,383.01,4556296,1,0,19,2.23382e+07,14,6,917,3.13209e+07,2
FORMULA MAPK-PT-00040-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((((ERKPP_Phase3>=3)&&((ERKP_Phase3<=MEKPP_Phase2)||(ERK_MEKPP<=MEKP_Phase2)))&&(MEKP_RafP>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (((ERKPP_Phase3>=3)&&((ERKP_Phase3<=MEKPP_Phase2)||(ERK_MEKPP<=MEKP_Phase2)))&&(MEKP_RafP>=1)))] != FALSE
(forward)formula 4,1,383.098,4556296,1,0,19,2.23382e+07,15,6,1015,3.13209e+07,3
FORMULA MAPK-PT-00040-CTLCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(EG(!((Phase2>=3))))
=> equivalent forward existential formula: [FwdG(FwdU(Init,TRUE),!((Phase2>=3)))] != FALSE
Hit Full ! (commute/partial/dont) 24/0/6
(forward)formula 5,1,383.758,4556296,1,0,19,2.23382e+07,27,6,1243,3.13209e+07,11
FORMULA MAPK-PT-00040-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(!((ERK<=MEKP_Phase2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (ERK<=MEKP_Phase2))] = FALSE
(forward)formula 6,0,383.91,4556296,1,0,19,2.23382e+07,28,6,1286,3.13209e+07,12
FORMULA MAPK-PT-00040-CTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E(TRUE U ((ERKP_Phase3>=1)&&(Phase2<=MEKP_Phase2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * ((ERKP_Phase3>=1)&&(Phase2<=MEKP_Phase2)))] != FALSE
(forward)formula 7,1,383.924,4556296,1,0,19,2.23382e+07,29,6,1309,3.13209e+07,13
FORMULA MAPK-PT-00040-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(EF((ERKP_Phase3>=3)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (ERKP_Phase3>=3))] = FALSE
(forward)formula 8,0,383.925,4556296,1,0,19,2.23382e+07,30,6,1310,3.13209e+07,14
FORMULA MAPK-PT-00040-CTLCardinality-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EX(((MEKP_RafP<=Raf)||(MEK>=3))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(((MEKP_RafP<=Raf)||(MEK>=3)))))] = FALSE
(forward)formula 9,0,385.132,4556296,1,0,20,2.23382e+07,31,6,1353,3.13209e+07,16
FORMULA MAPK-PT-00040-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(EF((ERKPP>=3)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (ERKPP>=3))] = FALSE
(forward)formula 10,0,385.134,4556296,1,0,21,2.23382e+07,31,7,1353,3.13209e+07,17
FORMULA MAPK-PT-00040-CTLCardinality-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(((Phase3>=2)&&(Phase1>=2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((Phase3>=2)&&(Phase1>=2))))] = FALSE
(forward)formula 11,0,385.185,4556296,1,0,24,2.23382e+07,33,9,1359,3.13209e+07,18
FORMULA MAPK-PT-00040-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG((Phase1>=3))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((Phase1>=3)))] = FALSE
(forward)formula 12,0,385.237,4556296,1,0,27,2.23382e+07,35,11,1361,3.13209e+07,19
FORMULA MAPK-PT-00040-CTLCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (E(!((MEKP>=3)) U (Phase1>=2)) * AG((ERK>=1)))
=> equivalent forward existential formula: ([(Init * !(E(!((MEKP>=3)) U (Phase1>=2))))] = FALSE * [(FwdU(Init,TRUE) * !((ERK>=1)))] = FALSE)
(forward)formula 13,0,385.239,4556296,1,0,29,2.23382e+07,37,13,1362,3.13209e+07,20
FORMULA MAPK-PT-00040-CTLCardinality-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E(!((Phase1<=ERKPP)) U (MEKPP_Phase2>=3))
=> equivalent forward existential formula: [(FwdU(Init,!((Phase1<=ERKPP))) * (MEKPP_Phase2>=3))] != FALSE
Hit Full ! (commute/partial/dont) 24/0/6
(forward)formula 14,1,413.397,4556296,1,0,34,2.23382e+07,46,14,1459,3.13209e+07,24
FORMULA MAPK-PT-00040-CTLCardinality-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(!((MEK<=MEKP_RafP)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (MEK<=MEKP_RafP))] = FALSE
(forward)formula 15,0,413.504,4556296,1,0,36,2.23382e+07,47,15,1501,3.13209e+07,25
FORMULA MAPK-PT-00040-CTLCardinality-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************


BK_STOP 1553723505911

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 27, 2019 9:44:49 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 27, 2019 9:44:49 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 27, 2019 9:44:49 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 40 ms
Mar 27, 2019 9:44:49 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Mar 27, 2019 9:44:49 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Mar 27, 2019 9:44:49 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 9 ms
Mar 27, 2019 9:44:50 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 52 ms
Mar 27, 2019 9:44:50 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30 transitions.
Mar 27, 2019 9:44:50 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 22 places.
Mar 27, 2019 9:44:50 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 30 transitions.
Mar 27, 2019 9:44:50 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 1 ms
Mar 27, 2019 9:44:50 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00040"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstoolsm"
echo " Input is MAPK-PT-00040, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r196-smll-155246587400265"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00040.tgz
mv MAPK-PT-00040 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;