Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r196-smll-155246587400257.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstoolsm
Input is MAPK-PT-00020, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r196-smll-155246587400257
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 4.3K Feb 11 22:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 11 22:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 7 23:37 CTLFireability.txt
-rw-r--r-- 1 mcc users 13K Feb 7 23:37 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 100 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 338 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.3K Feb 5 00:12 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.9K Feb 5 00:12 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.9K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Feb 4 06:24 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 4 06:24 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Jan 31 23:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K Jan 31 23:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 25K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00020-CTLFireability-00
FORMULA_NAME MAPK-PT-00020-CTLFireability-01
FORMULA_NAME MAPK-PT-00020-CTLFireability-02
FORMULA_NAME MAPK-PT-00020-CTLFireability-03
FORMULA_NAME MAPK-PT-00020-CTLFireability-04
FORMULA_NAME MAPK-PT-00020-CTLFireability-05
FORMULA_NAME MAPK-PT-00020-CTLFireability-06
FORMULA_NAME MAPK-PT-00020-CTLFireability-07
FORMULA_NAME MAPK-PT-00020-CTLFireability-08
FORMULA_NAME MAPK-PT-00020-CTLFireability-09
FORMULA_NAME MAPK-PT-00020-CTLFireability-10
FORMULA_NAME MAPK-PT-00020-CTLFireability-11
FORMULA_NAME MAPK-PT-00020-CTLFireability-12
FORMULA_NAME MAPK-PT-00020-CTLFireability-13
FORMULA_NAME MAPK-PT-00020-CTLFireability-14
FORMULA_NAME MAPK-PT-00020-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1553722873404

Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.81258e+10,0.219684,9788,2,2788,5,28469,6,0,121,28541,0


Converting to forward existential form...Done !
original formula: E(!(((MEK>=1)&&(RafP>=1))) U (ERKP_MEKPP>=1))
=> equivalent forward existential formula: [(FwdU(Init,!(((MEK>=1)&&(RafP>=1)))) * (ERKP_MEKPP>=1))] != FALSE
Hit Full ! (commute/partial/dont) 20/0/10
(forward)formula 0,0,0.222874,10108,1,0,9,28469,16,1,225,28541,4
FORMULA MAPK-PT-00020-CTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (AG(((((MEKPP_Phase2>=1)&&(MEKP_Phase2>=1))&&(!((MEKP>=1)&&(RafP>=1)))) + EF((ERK_MEKPP>=1)))) * AF(!((ERKP_Phase3>=1))))
=> equivalent forward existential formula: ([((FwdU(Init,TRUE) * !((((MEKPP_Phase2>=1)&&(MEKP_Phase2>=1))&&(!((MEKP>=1)&&(RafP>=1)))))) * !(E(TRUE U (ERK_MEKPP>=1))))] = FALSE * [FwdG(Init,!(!((ERKP_Phase3>=1))))] = FALSE)
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 1,1,0.431533,12220,1,0,11,41009,32,2,875,28541,12
FORMULA MAPK-PT-00020-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(((((ERKP_Phase3>=1)||(Raf_RasGTP>=1))||((MEKPP>=1)&&(ERKP>=1))) + !(AG((ERKP_MEKPP>=1)))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !((((ERKP_Phase3>=1)||(Raf_RasGTP>=1))||((MEKPP>=1)&&(ERKP>=1))))) * !(E(TRUE U !((ERKP_MEKPP>=1)))))] = FALSE
(forward)formula 2,1,0.436311,12484,1,0,12,41811,33,2,876,28541,15
FORMULA MAPK-PT-00020-CTLFireability-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(((ERKPP_Phase3>=1) * AG((MEKP_Phase2>=1))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * (ERKPP_Phase3>=1)) * !(E(TRUE U !((MEKP_Phase2>=1)))))] != FALSE
(forward)formula 3,0,0.455098,13012,1,0,13,43558,35,2,877,29575,18
FORMULA MAPK-PT-00020-CTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(AX(EF((MEKP_Phase2>=1))))
=> equivalent forward existential formula: [(EY(FwdU(Init,TRUE)) * !(E(TRUE U (MEKP_Phase2>=1))))] = FALSE
(forward)formula 4,1,0.465947,13276,1,0,14,44394,35,2,877,30281,21
FORMULA MAPK-PT-00020-CTLFireability-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: FALSE
=> equivalent forward existential formula: [(Init * FALSE)] != FALSE
(forward)formula 5,0,0.465993,13276,1,0,14,44394,35,2,877,30281,21
FORMULA MAPK-PT-00020-CTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: FALSE
=> equivalent forward existential formula: [(Init * FALSE)] != FALSE
(forward)formula 6,0,0.466027,13276,1,0,14,44394,35,2,877,30281,21
FORMULA MAPK-PT-00020-CTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AX((MEKP_Phase2>=1))
=> equivalent forward existential formula: [(EY(Init) * !((MEKP_Phase2>=1)))] = FALSE
(forward)formula 7,0,0.467901,13540,1,0,16,44424,35,4,877,31426,22
FORMULA MAPK-PT-00020-CTLFireability-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: TRUE
=> equivalent forward existential formula: [(Init * TRUE)] != FALSE
(forward)formula 8,1,0.467948,13540,1,0,16,44424,35,4,877,31426,22
FORMULA MAPK-PT-00020-CTLFireability-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: FALSE
=> equivalent forward existential formula: [(Init * FALSE)] != FALSE
(forward)formula 9,0,0.46798,13540,1,0,16,44424,35,4,877,31426,22
FORMULA MAPK-PT-00020-CTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: FALSE
=> equivalent forward existential formula: [(Init * FALSE)] != FALSE
(forward)formula 10,0,0.46801,13540,1,0,16,44424,35,4,877,31426,22
FORMULA MAPK-PT-00020-CTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(((AG((ERKP_MEKPP>=1)) * (Raf_RasGTP>=1)) + EX(((MEKP_Phase2>=1)||(MEKP_RafP>=1)))))
=> equivalent forward existential formula: ([(FwdU((FwdU(Init,TRUE) * !(EX(((MEKP_Phase2>=1)||(MEKP_RafP>=1))))),TRUE) * !((ERKP_MEKPP>=1)))] = FALSE * [((FwdU(Init,TRUE) * !(EX(((MEKP_Phase2>=1)||(MEKP_RafP>=1))))) * !((Raf_RasGTP>=1)))] = FALSE)
(forward)formula 11,0,0.498839,14068,1,0,23,51253,38,8,879,39961,25
FORMULA MAPK-PT-00020-CTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: FALSE
=> equivalent forward existential formula: [(Init * FALSE)] != FALSE
(forward)formula 12,0,0.498923,14068,1,0,23,51253,38,8,879,39961,25
FORMULA MAPK-PT-00020-CTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(EX(EF(!((MEKPP_Phase2>=1)))))
=> equivalent forward existential formula: [(FwdU(EY(Init),TRUE) * !((MEKPP_Phase2>=1)))] = FALSE
(forward)formula 13,0,0.617963,16444,1,0,26,62743,41,10,901,52202,28
FORMULA MAPK-PT-00020-CTLFireability-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: FALSE
=> equivalent forward existential formula: [(Init * FALSE)] != FALSE
(forward)formula 14,0,0.618033,16444,1,0,26,62743,41,10,901,52202,28
FORMULA MAPK-PT-00020-CTLFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: FALSE
=> equivalent forward existential formula: [(Init * FALSE)] != FALSE
(forward)formula 15,0,0.618067,16444,1,0,26,62743,41,10,901,52202,28
FORMULA MAPK-PT-00020-CTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************


BK_STOP 1553722878129

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 27, 2019 9:41:15 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 27, 2019 9:41:15 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 27, 2019 9:41:15 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 43 ms
Mar 27, 2019 9:41:15 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Mar 27, 2019 9:41:16 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Mar 27, 2019 9:41:16 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 8 ms
Mar 27, 2019 9:41:16 PM fr.lip6.move.gal.instantiate.CTLSimplifier simplifyTemporal
INFO: Initial state reduction rules for CTL removed 8 formulas.
Mar 27, 2019 9:41:16 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 34 ms
Mar 27, 2019 9:41:16 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30 transitions.
Mar 27, 2019 9:41:16 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 22 places.
Mar 27, 2019 9:41:16 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 30 transitions.
Mar 27, 2019 9:41:16 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
Mar 27, 2019 9:41:16 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00020"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstoolsm"
echo " Input is MAPK-PT-00020, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r196-smll-155246587400257"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00020.tgz
mv MAPK-PT-00020 execution
cd execution
if [ "CTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;