Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2019-input.r193-ebro-155234659200236.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstoolsm
Input is Diffusion2D-PT-D50N050, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r193-ebro-155234659200236
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 4.5K Feb 10 21:36 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 10 21:36 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K Feb 6 17:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K Feb 6 17:58 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 109 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 347 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.5K Feb 4 23:33 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.4K Feb 4 23:32 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 4 22:34 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.5K Feb 4 22:34 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Feb 3 07:22 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K Feb 3 07:22 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.4K Jan 30 23:47 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Jan 30 23:46 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:19 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 4 22:19 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 8 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 7.3M Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-00
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-01
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-02
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-03
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-04
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-05
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-06
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-07
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-08
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-09
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-10
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-11
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-12
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-13
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-14
FORMULA_NAME Diffusion2D-PT-D50N050-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1553597249373

Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-00 with value :cAMP__25_17_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-01 with value :cAMP__6_43_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-02 with value :cAMP__24_13_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-03 with value :cAMP__16_49_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-04 with value :cAMP__17_20_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-05 with value :cAMP__50_20_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-06 with value :cAMP__27_22_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-07 with value :cAMP__14_7_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-08 with value :cAMP__9_2_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-09 with value :cAMP__26_18_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-10 with value :cAMP__45_36_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-11 with value :cAMP__5_47_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-12 with value :cAMP__10_49_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-13 with value :cAMP__24_11_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-14 with value :cAMP__40_48_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-15 with value :cAMP__8_28_
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-00 with value :cAMP__25_17_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-01 with value :cAMP__6_43_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-02 with value :cAMP__24_13_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-03 with value :cAMP__16_49_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-04 with value :cAMP__17_20_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-05 with value :cAMP__50_20_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-06 with value :cAMP__27_22_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-07 with value :cAMP__14_7_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-08 with value :cAMP__9_2_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-09 with value :cAMP__26_18_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-10 with value :cAMP__45_36_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-11 with value :cAMP__5_47_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-12 with value :cAMP__10_49_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-13 with value :cAMP__24_11_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-14 with value :cAMP__40_48_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-15 with value :cAMP__8_28_
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-00 with value :cAMP__25_17_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-01 with value :cAMP__6_43_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-02 with value :cAMP__24_13_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-03 with value :cAMP__16_49_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-04 with value :cAMP__17_20_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-05 with value :cAMP__50_20_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-06 with value :cAMP__27_22_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-07 with value :cAMP__14_7_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-08 with value :cAMP__9_2_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-09 with value :cAMP__26_18_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-10 with value :cAMP__45_36_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-11 with value :cAMP__5_47_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-12 with value :cAMP__10_49_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-13 with value :cAMP__24_11_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-14 with value :cAMP__40_48_
Read [bounds] property : Diffusion2D-PT-D50N050-UpperBounds-15 with value :cAMP__8_28_

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 26, 2019 10:47:32 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 26, 2019 10:47:33 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 26, 2019 10:47:33 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 734 ms
Mar 26, 2019 10:47:33 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2500 places.
Mar 26, 2019 10:47:34 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 19404 transitions.
Mar 26, 2019 10:47:37 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2326 ms
Mar 26, 2019 10:47:39 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 19404 transitions.
Mar 26, 2019 10:47:40 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 2500 places.
Mar 26, 2019 10:47:40 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 19404 transitions.
Mar 26, 2019 10:47:46 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 206 ms
Mar 26, 2019 10:47:46 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
Mar 26, 2019 11:07:49 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2012 ms
Mar 26, 2019 11:07:49 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 138 ms
Mar 26, 2019 11:07:49 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 0 ms
Mar 26, 2019 11:27:49 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Mar 26, 2019 11:27:51 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1976 ms
Mar 26, 2019 11:27:53 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1738 ms
Mar 26, 2019 11:27:54 AM fr.lip6.move.gal.application.MccTranslator applyOrder
WARNING: Could not apply decomposition. Using flat GAL structure.
java.lang.NullPointerException
at fr.lip6.move.gal.application.MccTranslator.applyOrder(MccTranslator.java:128)
at fr.lip6.move.gal.application.MccTranslator.flattenSpec(MccTranslator.java:156)
at fr.lip6.move.gal.application.Application.runMultiITS(Application.java:427)
at fr.lip6.move.gal.application.Application.start(Application.java:237)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:40)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:137)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:107)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:595)
at org.eclipse.equinox.launcher.Main.run(Main.java:1501)
at org.eclipse.equinox.launcher.Main.main(Main.java:1474)
Mar 26, 2019 11:27:55 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1760 ms
Mar 26, 2019 11:27:55 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 89 ms
Mar 26, 2019 11:27:55 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 0 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N050"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstoolsm"
echo " Input is Diffusion2D-PT-D50N050, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r193-ebro-155234659200236"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N050.tgz
mv Diffusion2D-PT-D50N050 execution
cd execution
if [ "UpperBounds" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "UpperBounds" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;