Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fko/mcc2019-input.r192-oct2-155234410200633.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fko/mcc2019-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstoolsm
Input is DNAwalker-PT-05track28LR, examination is GlobalProperties
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r192-oct2-155234410200633
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 264K
-rw-r--r-- 1 mcc users 3.7K Feb 10 20:04 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K Feb 10 20:04 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Feb 6 15:41 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 6 15:41 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 111 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 349 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.4K Feb 4 23:25 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K Feb 4 23:25 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K Feb 4 22:34 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.6K Feb 4 22:34 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.8K Feb 3 06:28 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 3 06:28 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Jan 30 22:49 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Jan 30 22:49 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:19 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:19 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 12 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 108K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME DNAwalker-PT-05track28LR-GlobalProperties-0

=== Now, execution of the tool begins

BK_START 1553606132083

Working with output stream class java.io.PrintStream
Flatten gal took : 69 ms
Applied a total of 0 rules in 4 ms. Remains 34 /34 variables (removed 0) and now considering 250/250 (removed 0) transitions.
Random walk for 250 k steps run took 2412 ms.
Normalized transition count is 247
// Phase 1: matrix 247 rows 34 cols
Random walk for 4 * 500 k steps run took 15180 ms.
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 247
// Phase 1: matrix 247 rows 34 cols
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/GlobalProperties.pnml.gal, -t, CGAL, -ctl, DEADLOCK, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/GlobalProperties.pnml.gal -t CGAL -ctl DEADLOCK --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.35341e+08,2.21075,58092,2,6719,5,234534,6,0,421,276471,0


Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
dead,106288,3.04937,58972,2,566,7,343258,9,1,1465,276471,2

System contains 106288 deadlocks (shown below if less than --print-limit option) !
FORMULA DNAwalker-PT-05track28LR-GlobalProperties-0 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
[ 106288 states ] showing 10 first states
[ A17=1 A20=1 A25=1 A28=1 A2=2 ]
[ A17=1 A20=1 A25=1 A28=1 A4=2 ]
[ A17=1 A20=1 A25=1 A28=1 A3=2 ]
[ A17=1 A20=1 A25=1 A28=1 A9=2 ]
[ A17=1 A20=1 A25=1 A28=1 A5=2 ]
[ A17=1 A20=1 A25=1 A28=1 A10=2 ]
[ A17=1 A20=1 A25=1 A28=1 A11=1 A2=2 ]
[ A17=1 A20=1 A25=1 A28=1 A11=2 ]
[ A17=1 A20=1 A25=1 A28=1 A11=2 A2=1 ]
[ A17=1 A20=1 A25=1 A28=1 A12=1 A2=2 ]
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1553606155792

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ GlobalProperties = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution GlobalProperties -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination GlobalProperties -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, GlobalProperties, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 46 ms
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 34 places.
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 250 transitions.
Mar 26, 2019 1:15:33 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 11 ms
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.instantiate.PropertySimplifier evalInInitialState
WARNING: Unexpected boolean logic operator in evalInInitialState fr.lip6.move.gal.impl.EXImpl
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property DNAwalker-PT-05track28LR-GlobalProperties-0 is trivially true : it is verified in initial state.
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 66 ms
Mar 26, 2019 1:15:33 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 3 ms
Mar 26, 2019 1:15:33 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 250 transitions.
Mar 26, 2019 1:15:51 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property DNAwalker-PT-05track28LR-GlobalProperties-0 is trivially true : it is verified in initial state.
Mar 26, 2019 1:15:51 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 33 ms
Mar 26, 2019 1:15:51 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 250 transitions.
Mar 26, 2019 1:15:51 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 34 places.
Mar 26, 2019 1:15:51 PM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 250 transitions.
Mar 26, 2019 1:15:51 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 250 transitions.
Mar 26, 2019 1:15:51 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 0 place invariants in 18 ms
Mar 26, 2019 1:15:52 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/GlobalProperties.pnml.gal : 1 ms
Mar 26, 2019 1:15:52 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 34 variables to be positive in 315 ms
Mar 26, 2019 1:15:52 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 250 transitions.
Mar 26, 2019 1:15:52 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/250 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 1:15:52 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 23 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 1:15:52 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 250 transitions.
Mar 26, 2019 1:15:52 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 17 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 1:15:52 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 250 transitions.
SMT solver raised 'unknown', retrying with same input.
Skipping mayMatrices nes/nds SMT solver raised an error :unknown
java.lang.RuntimeException: SMT solver raised an error :unknown
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.computeCoEnablingMatrix(NecessaryEnablingsolver.java:490)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:530)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
Mar 26, 2019 1:15:55 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 3549ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="DNAwalker-PT-05track28LR"
export BK_EXAMINATION="GlobalProperties"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstoolsm"
echo " Input is DNAwalker-PT-05track28LR, examination is GlobalProperties"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r192-oct2-155234410200633"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/DNAwalker-PT-05track28LR.tgz
mv DNAwalker-PT-05track28LR execution
cd execution
if [ "GlobalProperties" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "GlobalProperties" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "GlobalProperties" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "GlobalProperties" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "GlobalProperties.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property GlobalProperties.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "GlobalProperties.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' GlobalProperties.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;