Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r190-smll-155225126800221.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstoolsm
Input is CircularTrains-PT-768, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r190-smll-155225126800221
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 756K
-rw-r--r-- 1 mcc users 4.0K Feb 9 08:35 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K Feb 9 08:35 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K Feb 5 07:19 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K Feb 5 07:19 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 108 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 346 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.6K Feb 4 23:07 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K Feb 4 23:07 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K Feb 4 22:33 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.2K Feb 4 22:32 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K Feb 2 01:45 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K Feb 2 01:45 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.3K Jan 29 15:24 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Jan 29 15:24 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:18 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:18 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 4 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 591K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME CircularTrains-PT-768-CTLFireability-00
FORMULA_NAME CircularTrains-PT-768-CTLFireability-01
FORMULA_NAME CircularTrains-PT-768-CTLFireability-02
FORMULA_NAME CircularTrains-PT-768-CTLFireability-03
FORMULA_NAME CircularTrains-PT-768-CTLFireability-04
FORMULA_NAME CircularTrains-PT-768-CTLFireability-05
FORMULA_NAME CircularTrains-PT-768-CTLFireability-06
FORMULA_NAME CircularTrains-PT-768-CTLFireability-07
FORMULA_NAME CircularTrains-PT-768-CTLFireability-08
FORMULA_NAME CircularTrains-PT-768-CTLFireability-09
FORMULA_NAME CircularTrains-PT-768-CTLFireability-10
FORMULA_NAME CircularTrains-PT-768-CTLFireability-11
FORMULA_NAME CircularTrains-PT-768-CTLFireability-12
FORMULA_NAME CircularTrains-PT-768-CTLFireability-13
FORMULA_NAME CircularTrains-PT-768-CTLFireability-14
FORMULA_NAME CircularTrains-PT-768-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1553664959548

Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
P-invariant computation with GreatSPN timed out. Skipping.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201903251645/bin/convert-linux64, -i, /tmp/graph2248524907677534462.txt, -o, /tmp/graph2248524907677534462.bin, -w, /tmp/graph2248524907677534462.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201903251645/bin/louvain-linux64, /tmp/graph2248524907677534462.bin, -l, -1, -v, -w, /tmp/graph2248524907677534462.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 28 ordering constraints for composite.
built 27 ordering constraints for composite.
built 5 ordering constraints for composite.
built 6 ordering constraints for composite.
built 7 ordering constraints for composite.
built 8 ordering constraints for composite.
built 7 ordering constraints for composite.
built 5 ordering constraints for composite.
built 9 ordering constraints for composite.
built 7 ordering constraints for composite.
built 5 ordering constraints for composite.
built 6 ordering constraints for composite.
built 9 ordering constraints for composite.
built 7 ordering constraints for composite.
built 5 ordering constraints for composite.
built 9 ordering constraints for composite.
built 5 ordering constraints for composite.
built 37 ordering constraints for composite.
built 24 ordering constraints for composite.
built 29 ordering constraints for composite.
built 29 ordering constraints for composite.
built 29 ordering constraints for composite.
built 31 ordering constraints for composite.
built 33 ordering constraints for composite.
built 27 ordering constraints for composite.
built 34 ordering constraints for composite.
built 26 ordering constraints for composite.
built 21 ordering constraints for composite.
built 31 ordering constraints for composite.
built 32 ordering constraints for composite.
built 19 ordering constraints for composite.
built 29 ordering constraints for composite.
built 29 ordering constraints for composite.
built 40 ordering constraints for composite.
built 28 ordering constraints for composite.
built 29 ordering constraints for composite.
built 31 ordering constraints for composite.
built 28 ordering constraints for composite.
built 26 ordering constraints for composite.
built 28 ordering constraints for composite.
built 32 ordering constraints for composite.
built 26 ordering constraints for composite.
built 29 ordering constraints for composite.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_STOP 1553668421296

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 27, 2019 5:36:02 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 27, 2019 5:36:02 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 27, 2019 5:36:02 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 232 ms
Mar 27, 2019 5:36:02 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1536 places.
Mar 27, 2019 5:36:03 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 768 transitions.
Mar 27, 2019 5:36:03 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 63 ms
Mar 27, 2019 5:36:03 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 416 ms
Mar 27, 2019 5:36:04 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 768 transitions.
Mar 27, 2019 5:36:04 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 1536 places.
Mar 27, 2019 5:36:04 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 768 transitions.
Mar 27, 2019 5:36:34 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 7 ms
Mar 27, 2019 5:36:34 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
Mar 27, 2019 5:56:35 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 174 ms
Mar 27, 2019 5:56:35 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 7 ms
Mar 27, 2019 5:56:35 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms
Mar 27, 2019 6:16:35 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Mar 27, 2019 6:16:35 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 119 ms
Mar 27, 2019 6:16:35 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 183 ms
Begin: Wed Mar 27 06:16:35 2019

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Wed Mar 27 06:16:35 2019
network size: 1536 nodes, 6144 links, 1536 weight
quality increased from -0.000651042 to 0.447517
end computation: Wed Mar 27 06:16:35 2019
level 1:
start computation: Wed Mar 27 06:16:35 2019
network size: 537 nodes, 2619 links, 1536 weight
quality increased from 0.447517 to 0.805143
end computation: Wed Mar 27 06:16:35 2019
level 2:
start computation: Wed Mar 27 06:16:35 2019
network size: 144 nodes, 432 links, 1536 weight
quality increased from 0.805143 to 0.904554
end computation: Wed Mar 27 06:16:35 2019
level 3:
start computation: Wed Mar 27 06:16:35 2019
network size: 60 nodes, 180 links, 1536 weight
quality increased from 0.904554 to 0.926654
end computation: Wed Mar 27 06:16:35 2019
level 4:
start computation: Wed Mar 27 06:16:35 2019
network size: 29 nodes, 87 links, 1536 weight
quality increased from 0.926654 to 0.926699
end computation: Wed Mar 27 06:16:35 2019
level 5:
start computation: Wed Mar 27 06:16:35 2019
network size: 28 nodes, 84 links, 1536 weight
quality increased from 0.926699 to 0.926699
end computation: Wed Mar 27 06:16:35 2019
End: Wed Mar 27 06:16:35 2019
Total duration: 0 sec
0.926699
Mar 27, 2019 6:16:35 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
Mar 27, 2019 6:16:36 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
Mar 27, 2019 6:16:36 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 389 ms
Mar 27, 2019 6:16:36 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 19 ms
Mar 27, 2019 6:16:36 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="CircularTrains-PT-768"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstoolsm"
echo " Input is CircularTrains-PT-768, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r190-smll-155225126800221"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/CircularTrains-PT-768.tgz
mv CircularTrains-PT-768 execution
cd execution
if [ "CTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;