Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r189-csrt-155225079800040.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.....................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstoolsm
Input is Angiogenesis-PT-20, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r189-csrt-155225079800040
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 200K
-rw-r--r-- 1 mcc users 3.4K Feb 9 06:49 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K Feb 9 06:49 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Feb 5 03:34 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K Feb 5 03:34 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 105 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 343 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.8K Feb 4 22:53 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K Feb 4 22:53 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:32 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K Feb 4 22:32 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K Feb 2 00:15 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K Feb 2 00:15 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.6K Jan 29 11:29 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Jan 29 11:29 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:18 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:18 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 3 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 33K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-20-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1553581402385

Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl --load-order /home/mcc/execution/model.ord
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,3.5182e+17,637.834,5739020,2,692423,5,3.59024e+07,6,0,220,3.608e+07,0


Converting to forward existential form...Done !
original formula: !(AG(((KdStarGStarP3kStarP3P2<=AktStar)||(AktP3>=1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((KdStarGStarP3kStarP3P2<=AktStar)||(AktP3>=1))))] != FALSE
(forward)formula 0,1,655.686,5754448,1,0,8,3.59024e+07,9,2,290,3.608e+07,1
FORMULA Angiogenesis-PT-20-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(EF((KdStarGStarP3kStarP3>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (KdStarGStarP3kStarP3>=1))] = FALSE
(forward)formula 1,0,656.89,5754448,1,0,10,3.59024e+07,10,3,310,3.608e+07,2
FORMULA Angiogenesis-PT-20-CTLCardinality-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EX(((KdStarG>=2)||(KdStarGStarPgStar<=GStarP3kP3))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(((KdStarG>=2)||(KdStarGStarPgStar<=GStarP3kP3)))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions t12, t51, t57, t61, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 14 CTL formulae.
Detected timeout of ITS tools.
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 14 CTL formulae.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 48 ms
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Mar 26, 2019 6:23:25 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 14 ms
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 80 ms
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 39 places.
Mar 26, 2019 6:23:25 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 64 transitions.
Mar 26, 2019 6:23:25 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 2 ms
Mar 26, 2019 6:23:25 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms
Mar 26, 2019 6:43:26 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 35 ms
Mar 26, 2019 6:43:26 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 5 ms
Mar 26, 2019 6:43:26 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms
Mar 26, 2019 7:03:26 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 67 ms
Mar 26, 2019 7:03:26 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 8 ms
Mar 26, 2019 7:03:26 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 7 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstoolsm"
echo " Input is Angiogenesis-PT-20, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r189-csrt-155225079800040"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;