Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r189-csrt-155225079800034.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstoolsm
Input is Angiogenesis-PT-15, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r189-csrt-155225079800034
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.8K Feb 9 06:49 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K Feb 9 06:49 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Feb 5 03:33 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 5 03:33 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 105 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 343 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.7K Feb 4 22:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K Feb 4 22:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:32 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.6K Feb 4 22:32 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.5K Feb 2 00:15 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 2 00:15 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.5K Jan 29 11:28 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K Jan 29 11:28 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:18 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 4 22:18 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 3 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 33K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-00
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-01
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-02
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-03
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-04
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-05
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-06
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-07
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-08
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-09
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-10
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-11
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-12
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-13
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-14
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1553581383632

Working with output stream class java.io.PrintStream
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock, --load-order, /home/mcc/execution/model.ord], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903251645/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock --load-order /home/mcc/execution/model.ord
Read 16 LTL properties
Successfully loaded order from file /home/mcc/execution/model.ord
Checking formula 0 : !((G((("(KdStarGStarP3kP3>=1)")U("((PtP2>=1)&&(Pip3>=1))"))U(X(X("(PtP3>=1)"))))))
Formula 0 simplified : !G(("(KdStarGStarP3kP3>=1)" U "((PtP2>=1)&&(Pip3>=1))") U XX"(PtP3>=1)")
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 64 rows 39 cols
invariant :GStarP3kP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + P3k = 15
invariant :Pten + PtP2 + PtP3 + PtP3P2 = 15
invariant :Akt + AktP3 + AktStar = 15
invariant :DAGE + Enz = 15
invariant :Gab1 + GP3 + GStarP3 + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + -1'KdStarPg + -1'KdStarPgStar + -1'KdStarPgStarP2 + -1'P3k + -1'Pg = -15
invariant :GStarPgP3 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 + Pg = 15
invariant :KdStar + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 = 15
invariant :AktP3 + DAG + -1'Enz + -1'Gab1 + -1'KdStarG + -1'KdStarGStar + -1'KdStarGStarP3k + -1'KdStarGStarP3kStar + KdStarGStarP3kStarP3P2 + -1'KdStarGStarPg + -1'KdStarGStarPgStar + KdStarGStarPgStarP3P2 + KdStarPgStarP2 + Pip2 + Pip3 + PtP2 + PtP3 + 2'PtP3P2 = -15
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Compilation finished in 1209 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 95 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, []((((LTLAP0==true))U((LTLAP1==true)))U(X(X((LTLAP2==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 681 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-00 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(((LTLAP3==true))U(<>((LTLAP4==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 426 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-01 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, <>(<>([](<>([]((LTLAP0==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 377 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-02 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(<>(<>(((LTLAP5==true))U((LTLAP0==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 1079 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-03 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(<>((X((LTLAP6==true)))U(<>((LTLAP7==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 261 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-04 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, [](((LTLAP8==true))U((LTLAP9==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 745 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-05 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, (<>(<>([]((LTLAP10==true)))))U(X(<>(X((LTLAP11==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 1025 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-06 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, []((LTLAP12==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 539 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-07 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, false, --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 187 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-08 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, false, --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 179 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-09 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](X(((LTLAP13==true))U((LTLAP14==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 304 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-10 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>(<>(X(((LTLAP15==true))U((LTLAP13==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 496 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-11 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, false, --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 595 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-12 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(<>((<>((LTLAP16==true)))U(X((LTLAP13==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 655 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-13 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, false, --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 231 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-14 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, false, --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 154 ms.
FORMULA Angiogenesis-PT-15-LTLFireability-15 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1553581407331

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 26, 2019 6:23:05 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt]
Mar 26, 2019 6:23:05 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 26, 2019 6:23:05 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 47 ms
Mar 26, 2019 6:23:05 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Mar 26, 2019 6:23:06 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 20 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 74 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 24 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 39 places.
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.application.StructuralToGreatSPN handlePage
INFO: Transformed 64 transitions.
Mar 26, 2019 6:23:06 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 12 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
Mar 26, 2019 6:23:06 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 8 place invariants in 15 ms
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 39 variables to be positive in 102 ms
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 64 transitions.
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/64 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 64 transitions.
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 9 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 26, 2019 6:23:07 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 64 transitions.
Mar 26, 2019 6:23:10 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(11/64) took 2290 ms. Total solver calls (SAT/UNSAT): 537(537/0)
Mar 26, 2019 6:23:13 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(39/64) took 5395 ms. Total solver calls (SAT/UNSAT): 1298(1298/0)
Mar 26, 2019 6:23:14 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 6744 ms. Total solver calls (SAT/UNSAT): 1437(1437/0)
Mar 26, 2019 6:23:14 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 64 transitions.
Mar 26, 2019 6:23:17 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 2967 ms. Total solver calls (SAT/UNSAT): 371(0/371)
Mar 26, 2019 6:23:17 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 10978ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstoolsm"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstoolsm"
echo " Input is Angiogenesis-PT-15, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r189-csrt-155225079800034"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
if [ "LTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "LTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;