Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r096-smll-155246587500356.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
.......................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstools
Input is MAPKbis-PT-5320, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r096-smll-155246587500356
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 364K
-rw-r--r-- 1 mcc users 4.5K Feb 11 22:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 11 22:58 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.1K Feb 7 23:51 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K Feb 7 23:51 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 102 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 340 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.6K Feb 5 00:14 LTLCardinality.txt
-rw-r--r-- 1 mcc users 10K Feb 5 00:14 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.4K Feb 4 06:30 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 4 06:30 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.1K Feb 1 00:04 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 24K Feb 1 00:04 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 5 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 166K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-00
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-01
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-02
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-03
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-04
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-05
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-06
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-07
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-08
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-09
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-10
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-11
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-12
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-13
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-14
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1552887164792

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.12646e+06,0.149481,7984,2,247,5,15136,6,0,555,11428,0


Converting to forward existential form...Done !
original formula: (AF(!(((((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_1>=1))&&(!((Proliferation_equals_1>=1)&&(p70_equals_0>=1)))))) * AG(!(((((Proliferation_equals_1>=1)&&(p21_equals_1>=1))&&((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1)))&&(((MSK_equals_0>=1)&&(MYC_equals_1>=1))&&((Proliferation_equals_1>=1)&&(p70_equals_0>=1)))))))
=> equivalent forward existential formula: ([FwdG(Init,!(!(((((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_1>=1))&&(!((Proliferation_equals_1>=1)&&(p70_equals_0>=1)))))))] = FALSE * [(FwdU(Init,TRUE) * ((((Proliferation_equals_1>=1)&&(p21_equals_1>=1))&&((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1)))&&(((MSK_equals_0>=1)&&(MYC_equals_1>=1))&&((Proliferation_equals_1>=1)&&(p70_equals_0>=1)))))] = FALSE)
(forward)formula 0,1,0.201281,8416,1,0,8,15136,19,1,2631,11428,6
FORMULA MAPKbis-PT-5320-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(AX(((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(!(((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1))))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions AP1_equals_1_to_AP1_equals_0_when_ATF2_equals_0_and_FOS_equals_0, AP1_equals_1_to_AP1_equals_0_when_JUN_equals_0, ATF2_equals_1_to_ATF2_equals_0_when_JNK_equals_0_and_p38_equals_0, ATM_equals_0_to_ATM_equals_1_when_DNA_damage_equals_1, Apoptosis_equals_1_to_Apoptosis_equals_0_when_FOXO3_equals_0, Apoptosis_equals_1_to_Apoptosis_equals_0_when_p53_equals_0, CREB_equals_1_to_CREB_equals_0_when_MSK_equals_0, DUSP1_equals_1_to_DUSP1_equals_0_when_CREB_equals_0, ELK1_equals_1_to_ELK1_equals_0_when_ERK_equals_0_and_JNK_equals_0_and_p38_equals_0, FOXO3_equals_1_to_FOXO3_equals_0_when_JNK_equals_0, GADD45_equals_1_to_GADD45_equals_0_when_SMAD_equals_0_and_p53_equals_0, Growth_Arrest_equals_1_to_Growth_Arrest_equals_0_when_p21_equals_0, JNK_equals_1_to_JNK_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, JUN_equals_1_to_JUN_equals_0_when_JNK_equals_0, MAX_equals_1_to_MAX_equals_0_when_p38_equals_0, MDM2_equals_1_to_MDM2_equals_0_when_AKT_equals_0_and_p53_equals_0, MSK_equals_1_to_MSK_equals_0_when_ERK_equals_0_and_p38_equals_0, MTK1_equals_0_to_MTK1_equals_1_when_GADD45_equals_1, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, MYC_equals_1_to_MYC_equals_0_when_AKT_equals_0_and_MAX_equals_0, MYC_equals_1_to_MYC_equals_0_when_MSK_equals_0, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, PTEN_equals_1_to_PTEN_equals_0_when_p53_equals_0, TAOK_equals_0_to_TAOK_equals_1_when_ATM_equals_1, p14_equals_1_to_p14_equals_0_when_MYC_equals_0, p21_equals_1_to_p21_equals_0_when_p53_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAOK_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_MDM2_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_p38_equals_1, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :106/32/31/169
(forward)formula 1,1,0.268066,9476,1,0,166,18155,259,69,3259,21139,243
FORMULA MAPKbis-PT-5320-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(AG(AX(((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !(!(EX(!(((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1)))))))))] != FALSE
(forward)formula 2,1,0.288211,10004,1,0,173,20879,266,75,3301,25446,254
FORMULA MAPKbis-PT-5320-CTLFireability-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (E(!(((((((AP1_equals_0>=1)&&(MAP3K1_3_equals_0>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(RAF_equals_1>=1))&&(((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&(p38_equals_1>=1)))) U EF(((FOXO3_equals_1>=1)&&(JNK_equals_0>=1)))) + (((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))
=> equivalent forward existential formula: ([(FwdU(FwdU(Init,!(((((((AP1_equals_0>=1)&&(MAP3K1_3_equals_0>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(RAF_equals_1>=1))&&(((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&(p38_equals_1>=1))))),TRUE) * ((FOXO3_equals_1>=1)&&(JNK_equals_0>=1)))] != FALSE + [(Init * (((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))] != FALSE)
(forward)formula 3,1,0.395214,12908,1,0,175,33312,270,76,3463,35537,260
FORMULA MAPKbis-PT-5320-CTLFireability-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (EX(((EGFR_equals_1>=1)&&(GRB2_equals_0>=1))) + AG(!(EF(((EGFR_equals_1>=1)&&(PKC_equals_1>=1))))))
=> equivalent forward existential formula: [(FwdU(FwdU((Init * !(EX(((EGFR_equals_1>=1)&&(GRB2_equals_0>=1))))),TRUE),TRUE) * ((EGFR_equals_1>=1)&&(PKC_equals_1>=1)))] = FALSE
(forward)formula 4,1,0.395755,12908,1,0,175,33312,271,76,3463,35537,260
FORMULA MAPKbis-PT-5320-CTLFireability-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EX(AF(((!(((GAB1_equals_1>=1)&&(GRB2_equals_0>=1))&&(PI3K_equals_0>=1)))&&(((((AP1_equals_0>=1)&&(ATF2_equals_0>=1))&&(FOS_equals_1>=1))&&(JUN_equals_1>=1))||((PTEN_equals_0>=1)&&(p53_equals_1>=1))))))
=> equivalent forward existential formula: [(EY(Init) * !(EG(!(((!(((GAB1_equals_1>=1)&&(GRB2_equals_0>=1))&&(PI3K_equals_0>=1)))&&(((((AP1_equals_0>=1)&&(ATF2_equals_0>=1))&&(FOS_equals_1>=1))&&(JUN_equals_1>=1))||((PTEN_equals_0>=1)&&(p53_equals_1>=1))))))))] != FALSE
(forward)formula 5,0,1.1212,36092,1,0,485,153794,277,220,3482,240817,617
FORMULA MAPKbis-PT-5320-CTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(!(EF((((MYC_equals_0>=1)&&(p14_equals_1>=1))&&((((AKT_0>=1)&&(ERK_equals_0>=1))&&(RAF_equals_0>=1))&&(RAS_equals_1>=1))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U (((MYC_equals_0>=1)&&(p14_equals_1>=1))&&((((AKT_0>=1)&&(ERK_equals_0>=1))&&(RAF_equals_0>=1))&&(RAS_equals_1>=1))))))] != FALSE
(forward)formula 6,1,1.12335,36356,1,0,485,153794,278,220,3486,240817,618
FORMULA MAPKbis-PT-5320-CTLFireability-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EX(!(EF((((GAB1_equals_0>=1)&&(PI3K_equals_1>=1))&&(SOS_equals_0>=1)))))
=> equivalent forward existential formula: [(EY(Init) * !(E(TRUE U (((GAB1_equals_0>=1)&&(PI3K_equals_1>=1))&&(SOS_equals_0>=1)))))] != FALSE
(forward)formula 7,1,1.12461,36356,1,0,485,153794,279,221,3487,240832,619
FORMULA MAPKbis-PT-5320-CTLFireability-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (!((AG(!((((AKT_equals_1>=1)&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))) + (AX(((AKT_equals_1>=1)&&(FOXO3_equals_1>=1))) * ((((AKT_0>=1)&&(ERK_equals_0>=1))&&(PKC_equals_1>=1))&&(RAF_equals_0>=1))))) + A(AF(((((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&(p38_equals_1>=1))) U EX(((ATF2_equals_0>=1)&&(p38_equals_1>=1)))))
=> equivalent forward existential formula: (([(EY((Init * !(!(E(TRUE U !(!((((AKT_equals_1>=1)&&(MSK_equals_1>=1))&&(MYC_equals_0>=1))))))))) * !(((AKT_equals_1>=1)&&(FOXO3_equals_1>=1))))] != FALSE + [((Init * !(!(E(TRUE U !(!((((AKT_equals_1>=1)&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))))))) * !(((((AKT_0>=1)&&(ERK_equals_0>=1))&&(PKC_equals_1>=1))&&(RAF_equals_0>=1))))] != FALSE) + [((Init * !(EG(!(EX(((ATF2_equals_0>=1)&&(p38_equals_1>=1))))))) * !(E(!(EX(((ATF2_equals_0>=1)&&(p38_equals_1>=1)))) U (!(!(EG(!(((((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&(p38_equals_1>=1)))))) * !(EX(((ATF2_equals_0>=1)&&(p38_equals_1>=1))))))))] != FALSE)
Using saturation style SCC detection
(forward)formula 8,0,2.95545,95584,1,0,1107,444888,297,571,3545,767132,1285
FORMULA MAPKbis-PT-5320-CTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(E(!((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))) U (((PPP2CA_equals_1>=1)&&(p38_equals_0>=1))||((ERK_equals_0>=1)&&(FOS_equals_1>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(!((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))) U (((PPP2CA_equals_1>=1)&&(p38_equals_0>=1))||((ERK_equals_0>=1)&&(FOS_equals_1>=1))))))] = FALSE
(forward)formula 9,0,3.02847,97960,1,0,1128,456674,300,586,3552,784808,1322
FORMULA MAPKbis-PT-5320-CTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (AG(!((((((ERK_equals_1>=1)&&(PDK1_equals_1>=1))&&(p70_equals_0>=1))||((((ATM_equals_1>=1)&&(MDM2_equals_1>=1))&&(p38_equals_0>=1))&&(p53_equals_1>=1)))&&((((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&(p38_equals_1>=1))))) * ((EF(((((PI3K_equals_0>=1)&&(RAS_equals_1>=1))&&(SOS_equals_1>=1))&&(((GAB1_equals_1>=1)&&(GRB2_equals_0>=1))&&(PI3K_equals_0>=1)))) + EG(!(((RAS_equals_0>=1)&&(SOS_equals_1>=1))))) + (EF(((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&((ELK1_equals_0>=1)&&(p38_equals_1>=1)))) + (((!((Apoptosis_equals_1>=1)&&(ERK_equals_1>=1)))||(!(((DUSP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(p38_equals_0>=1))))&&((!((AKT_equals_1>=1)&&(FOXO3_equals_1>=1)))&&(((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_1>=1)))))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * (((((ERK_equals_1>=1)&&(PDK1_equals_1>=1))&&(p70_equals_0>=1))||((((ATM_equals_1>=1)&&(MDM2_equals_1>=1))&&(p38_equals_0>=1))&&(p53_equals_1>=1)))&&((((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&(p38_equals_1>=1))))] = FALSE * [(((Init * !((E(TRUE U ((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&((ELK1_equals_0>=1)&&(p38_equals_1>=1)))) + (((!((Apoptosis_equals_1>=1)&&(ERK_equals_1>=1)))||(!(((DUSP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(p38_equals_0>=1))))&&((!((AKT_equals_1>=1)&&(FOXO3_equals_1>=1)))&&(((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_1>=1))))))) * !(EG(!(((RAS_equals_0>=1)&&(SOS_equals_1>=1)))))) * !(E(TRUE U ((((PI3K_equals_0>=1)&&(RAS_equals_1>=1))&&(SOS_equals_1>=1))&&(((GAB1_equals_1>=1)&&(GRB2_equals_0>=1))&&(PI3K_equals_0>=1))))))] = FALSE)
(forward)formula 10,1,3.16986,102448,1,0,1207,475961,305,665,3561,822056,1488
FORMULA MAPKbis-PT-5320-CTLFireability-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (E(EF((((AKT_0>=1)&&(FOXO3_equals_0>=1))&&(JNK_equals_1>=1))) U ((((ELK1_equals_0>=1)&&(ERK_equals_1>=1))&&((TAK1_equals_0>=1)&&(TGFBR_equals_1>=1)))&&((((AKT_equals_1>=1)&&(MSK_equals_1>=1))&&(MYC_equals_0>=1))&&((JNK_equals_0>=1)&&(JUN_equals_1>=1))))) + (((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAOK_equals_1>=1)))
=> equivalent forward existential formula: ([(FwdU(Init,E(TRUE U (((AKT_0>=1)&&(FOXO3_equals_0>=1))&&(JNK_equals_1>=1)))) * ((((ELK1_equals_0>=1)&&(ERK_equals_1>=1))&&((TAK1_equals_0>=1)&&(TGFBR_equals_1>=1)))&&((((AKT_equals_1>=1)&&(MSK_equals_1>=1))&&(MYC_equals_0>=1))&&((JNK_equals_0>=1)&&(JUN_equals_1>=1)))))] != FALSE + [(Init * (((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAOK_equals_1>=1)))] != FALSE)
(forward)formula 11,0,3.1713,102712,1,0,1208,475998,307,665,3563,822056,1489
FORMULA MAPKbis-PT-5320-CTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(EX(((((ERK_equals_0>=1)&&(p70_equals_1>=1))&&(((ATM_equals_1>=1)&&(p38_equals_1>=1))&&(p53_equals_0>=1)))&&(((AKT_0>=1)&&(MDM2_equals_1>=1))&&(p53_equals_0>=1)))))
=> equivalent forward existential formula: [(EY(FwdU(Init,TRUE)) * ((((ERK_equals_0>=1)&&(p70_equals_1>=1))&&(((ATM_equals_1>=1)&&(p38_equals_1>=1))&&(p53_equals_0>=1)))&&(((AKT_0>=1)&&(MDM2_equals_1>=1))&&(p53_equals_0>=1))))] != FALSE
(forward)formula 12,0,3.17209,102712,1,0,1208,475998,308,665,3564,822056,1489
FORMULA MAPKbis-PT-5320-CTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(AX(EF((((AKT_equals_1>=1)&&(PDK1_equals_0>=1))&&(((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1))))))
=> equivalent forward existential formula: [(EY(Init) * !(E(TRUE U (((AKT_equals_1>=1)&&(PDK1_equals_0>=1))&&(((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1))))))] != FALSE
(forward)formula 13,1,3.1736,102712,1,0,1208,475998,309,665,3568,822056,1490
FORMULA MAPKbis-PT-5320-CTLFireability-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG((E(((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1)) U ((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1))) + EX(!(((ELK1_equals_0>=1)&&(ERK_equals_1>=1))))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !(EX(!(((ELK1_equals_0>=1)&&(ERK_equals_1>=1)))))) * !(E(((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1)) U ((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))))] = FALSE
(forward)formula 14,0,3.17644,102712,1,0,1208,475998,316,665,3573,822059,1493
FORMULA MAPKbis-PT-5320-CTLFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((CREB_equals_1>=1)&&(MSK_equals_0>=1)) + (EF(((FRS2_equals_1>=1)&&(GRB2_equals_1>=1))) + ((((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1))&&(((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))||((((DUSP1_equals_0>=1)&&(TAK1_equals_1>=1))&&(p38_equals_0>=1))&&((((AKT_0>=1)&&(ERK_equals_0>=1))&&(RAF_equals_0>=1))&&(RAS_equals_1>=1))))))
=> equivalent forward existential formula: ([(Init * ((CREB_equals_1>=1)&&(MSK_equals_0>=1)))] != FALSE + ([(FwdU(Init,TRUE) * ((FRS2_equals_1>=1)&&(GRB2_equals_1>=1)))] != FALSE + [(Init * ((((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1))&&(((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))||((((DUSP1_equals_0>=1)&&(TAK1_equals_1>=1))&&(p38_equals_0>=1))&&((((AKT_0>=1)&&(ERK_equals_0>=1))&&(RAF_equals_0>=1))&&(RAS_equals_1>=1)))))] != FALSE))
(forward)formula 15,0,3.17848,102976,1,0,1209,476072,319,665,3576,822059,1494
FORMULA MAPKbis-PT-5320-CTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************


BK_STOP 1552887173496

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 98 ms
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Mar 18, 2019 5:32:48 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 27 ms
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5320
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5320
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: EGFR_stimulus_equals_0,TGFBR_stimulus_equals_1,TGFBR_stimulus_equals_0,FGFR3_stimulus_equals_1,DNA_damage_equals_0,DNA_damage_equals_1,EGFR_stimulus_equals_1,FGFR3_stimulus_equals_0,
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :EGFR_stimulus_equals_0=1, TGFBR_stimulus_equals_1=0, TGFBR_stimulus_equals_0=1, FGFR3_stimulus_equals_1=0, DNA_damage_equals_0=0, DNA_damage_equals_1=1, EGFR_stimulus_equals_1=0, FGFR3_stimulus_equals_0=1
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 9 expressions due to constant valuations.
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 4 false transitions.
Mar 18, 2019 5:32:48 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 144 ms
Mar 18, 2019 5:32:48 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 7 ms
Mar 18, 2019 5:32:48 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 3 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5320"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5320, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r096-smll-155246587500356"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5320.tgz
mv MAPKbis-PT-5320 execution
cd execution
if [ "CTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;