About the Execution of ITS-Tools for MAPKbis-PT-5320
Execution Summary | |||||
Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
302.320 | 5796.00 | 8951.00 | 317.60 | TTTTFTFFTFFTFTFF | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/data/fkordon/mcc2019-input.r096-smll-155246587500355.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
......................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstools
Input is MAPKbis-PT-5320, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r096-smll-155246587500355
=====================================================================
--------------------
preparation of the directory to be used:
/home/mcc/execution
total 364K
-rw-r--r-- 1 mcc users 4.5K Feb 11 22:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 11 22:58 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.1K Feb 7 23:51 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K Feb 7 23:51 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 102 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 340 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.6K Feb 5 00:14 LTLCardinality.txt
-rw-r--r-- 1 mcc users 10K Feb 5 00:14 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.4K Feb 4 06:30 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 4 06:30 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.1K Feb 1 00:04 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 24K Feb 1 00:04 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 5 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 166K Mar 10 17:31 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-00
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-01
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-02
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-03
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-04
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-05
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-06
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-07
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-08
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-09
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-10
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-11
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-12
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-13
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-14
FORMULA_NAME MAPKbis-PT-5320-CTLCardinality-15
=== Now, execution of the tool begins
BK_START 1552887140011
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.12646e+06,0.187653,8048,2,247,5,15136,6,0,555,11428,0
Converting to forward existential form...Done !
original formula: AX(AG(!((Growth_Arrest_equals_1>=2))))
=> equivalent forward existential formula: [(FwdU(EY(Init),TRUE) * (Growth_Arrest_equals_1>=2))] = FALSE
(forward)formula 0,1,0.188951,8048,1,0,5,15136,8,0,557,11428,0
FORMULA MAPKbis-PT-5320-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: !(((DUSP1_equals_1<=Apoptosis_equals_0) * (AF((TGFBR_equals_1<=PI3K_equals_1)) * EF((BCL2_equals_0>=2)))))
=> equivalent forward existential formula: ([(Init * !((DUSP1_equals_1<=Apoptosis_equals_0)))] != FALSE + ([FwdG(Init,!((TGFBR_equals_1<=PI3K_equals_1)))] != FALSE + [(Init * !(E(TRUE U (BCL2_equals_0>=2))))] != FALSE))
Reverse transition relation is NOT exact ! Due to transitions AP1_equals_1_to_AP1_equals_0_when_ATF2_equals_0_and_FOS_equals_0, AP1_equals_1_to_AP1_equals_0_when_JUN_equals_0, ATF2_equals_1_to_ATF2_equals_0_when_JNK_equals_0_and_p38_equals_0, ATM_equals_0_to_ATM_equals_1_when_DNA_damage_equals_1, Apoptosis_equals_1_to_Apoptosis_equals_0_when_FOXO3_equals_0, Apoptosis_equals_1_to_Apoptosis_equals_0_when_p53_equals_0, CREB_equals_1_to_CREB_equals_0_when_MSK_equals_0, DUSP1_equals_1_to_DUSP1_equals_0_when_CREB_equals_0, ELK1_equals_1_to_ELK1_equals_0_when_ERK_equals_0_and_JNK_equals_0_and_p38_equals_0, FOXO3_equals_1_to_FOXO3_equals_0_when_JNK_equals_0, GADD45_equals_1_to_GADD45_equals_0_when_SMAD_equals_0_and_p53_equals_0, Growth_Arrest_equals_1_to_Growth_Arrest_equals_0_when_p21_equals_0, JNK_equals_1_to_JNK_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, JUN_equals_1_to_JUN_equals_0_when_JNK_equals_0, MAX_equals_1_to_MAX_equals_0_when_p38_equals_0, MDM2_equals_1_to_MDM2_equals_0_when_AKT_equals_0_and_p53_equals_0, MSK_equals_1_to_MSK_equals_0_when_ERK_equals_0_and_p38_equals_0, MTK1_equals_0_to_MTK1_equals_1_when_GADD45_equals_1, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, MYC_equals_1_to_MYC_equals_0_when_AKT_equals_0_and_MAX_equals_0, MYC_equals_1_to_MYC_equals_0_when_MSK_equals_0, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, PTEN_equals_1_to_PTEN_equals_0_when_p53_equals_0, TAOK_equals_0_to_TAOK_equals_1_when_ATM_equals_1, p14_equals_1_to_p14_equals_0_when_MYC_equals_0, p21_equals_1_to_p21_equals_0_when_p53_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAOK_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_MDM2_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_p38_equals_1, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :106/32/31/169
(forward)formula 1,1,0.301474,8684,1,0,161,15136,264,66,3221,12348,240
FORMULA MAPKbis-PT-5320-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: AF((AG((GRB2_equals_1<=JNK_equals_1)) + (((Proliferation_equals_1>=2)||(GAB1_equals_0<=MSK_equals_1))||((PTEN_equals_0<=ATF2_equals_1)&&(SMAD_equals_1<=GADD45_equals_1)))))
=> equivalent forward existential formula: [FwdG(Init,!((!(E(TRUE U !((GRB2_equals_1<=JNK_equals_1)))) + (((Proliferation_equals_1>=2)||(GAB1_equals_0<=MSK_equals_1))||((PTEN_equals_0<=ATF2_equals_1)&&(SMAD_equals_1<=GADD45_equals_1))))))] = FALSE
(forward)formula 2,1,0.305153,8948,1,0,162,15136,270,67,3245,12833,242
FORMULA MAPKbis-PT-5320-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: EF(AG(!((FOXO3_equals_1<=PTEN_equals_0))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !(!((FOXO3_equals_1<=PTEN_equals_0))))))] != FALSE
(forward)formula 3,1,0.376779,10268,1,0,181,22513,273,79,3303,26952,268
FORMULA MAPKbis-PT-5320-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: (EF((RAS_equals_1>=3)) * AG((GRB2_equals_0>=1)))
=> equivalent forward existential formula: ([(Init * !(E(TRUE U (RAS_equals_1>=3))))] = FALSE * [(FwdU(Init,TRUE) * !((GRB2_equals_0>=1)))] = FALSE)
(forward)formula 4,0,0.378124,10532,1,0,181,22513,276,79,3305,26952,269
FORMULA MAPKbis-PT-5320-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
original formula: (!(E((GAB1_equals_0>=1) U (PI3K_equals_1>=1))) * ((MSK_equals_1>=2) + ((((GADD45_equals_1<=RAS_equals_0)||(ATF2_equals_1>=3))&&((Apoptosis_equals_1<=0)||(p70_equals_1<=GADD45_equals_0))) + AG((FOS_equals_0<=MDM2_equals_0)))))
=> equivalent forward existential formula: ([(FwdU(Init,(GAB1_equals_0>=1)) * (PI3K_equals_1>=1))] = FALSE * [(FwdU(((Init * !((MSK_equals_1>=2))) * !((((GADD45_equals_1<=RAS_equals_0)||(ATF2_equals_1>=3))&&((Apoptosis_equals_1<=0)||(p70_equals_1<=GADD45_equals_0))))),TRUE) * !((FOS_equals_0<=MDM2_equals_0)))] = FALSE)
(forward)formula 5,1,0.381433,10796,1,0,184,22520,281,80,3332,27032,271
FORMULA MAPKbis-PT-5320-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: (EF(((TGFBR_equals_1>=3)&&(TGFBR_equals_0<=1))) + ((((FOXO3_equals_1<=MDM2_equals_1)&&(!(BCL2_equals_0<=SMAD_equals_0)))&&(((MSK_equals_0>=1)&&(JUN_equals_0<=p14_equals_0))||(p21_equals_1>=3))) * E((p70_equals_0<=RSK_equals_1) U (ATM_equals_1>=2))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * ((TGFBR_equals_1>=3)&&(TGFBR_equals_0<=1)))] != FALSE + [(FwdU((Init * (((FOXO3_equals_1<=MDM2_equals_1)&&(!(BCL2_equals_0<=SMAD_equals_0)))&&(((MSK_equals_0>=1)&&(JUN_equals_0<=p14_equals_0))||(p21_equals_1>=3)))),(p70_equals_0<=RSK_equals_1)) * (ATM_equals_1>=2))] != FALSE)
(forward)formula 6,0,0.382041,10796,1,0,184,22520,283,80,3336,27032,271
FORMULA MAPKbis-PT-5320-CTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
original formula: EF((AKT_equals_1>=1))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (AKT_equals_1>=1))] != FALSE
(forward)formula 7,0,0.382308,10796,1,0,184,22520,284,80,3336,27032,271
FORMULA MAPKbis-PT-5320-CTLCardinality-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
original formula: AG(((EGFR_equals_1<=1)||(ATM_equals_1<=Growth_Arrest_equals_1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((EGFR_equals_1<=1)||(ATM_equals_1<=Growth_Arrest_equals_1))))] = FALSE
(forward)formula 8,1,0.382988,10796,1,0,184,22520,286,80,3346,27048,271
FORMULA MAPKbis-PT-5320-CTLCardinality-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: !(AG((GADD45_equals_1<=GAB1_equals_0)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((GADD45_equals_1<=GAB1_equals_0)))] != FALSE
(forward)formula 9,0,0.383462,10796,1,0,184,22520,288,80,3351,27048,271
FORMULA MAPKbis-PT-5320-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
original formula: EG(E((PI3K_equals_1<=AKT_0) U (p14_equals_0>=3)))
=> equivalent forward existential formula: [FwdG(Init,E((PI3K_equals_1<=AKT_0) U (p14_equals_0>=3)))] != FALSE
(forward)formula 10,0,0.384621,10796,1,0,184,22520,290,80,3355,27048,273
FORMULA MAPKbis-PT-5320-CTLCardinality-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
original formula: AG(TRUE)
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(TRUE))] = FALSE
(forward)formula 11,1,0.384688,10796,1,0,184,22520,290,80,3355,27048,273
FORMULA MAPKbis-PT-5320-CTLCardinality-11 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: AF(((GAB1_equals_0>=3) + EF((DUSP1_equals_0>=3))))
=> equivalent forward existential formula: [FwdG(Init,!(((GAB1_equals_0>=3) + E(TRUE U (DUSP1_equals_0>=3)))))] = FALSE
(forward)formula 12,0,0.50569,13172,1,0,184,34851,293,82,3500,37322,278
FORMULA MAPKbis-PT-5320-CTLCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
original formula: (EG((PI3K_equals_1>=3)) + AG(((p70_equals_1>=3)||(GADD45_equals_1<=PLCG_equals_0))))
=> equivalent forward existential formula: [(FwdU((Init * !(EG((PI3K_equals_1>=3)))),TRUE) * !(((p70_equals_1>=3)||(GADD45_equals_1<=PLCG_equals_0))))] = FALSE
(forward)formula 13,1,0.506421,13172,1,0,184,34851,295,82,3509,37322,278
FORMULA MAPKbis-PT-5320-CTLCardinality-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !
***************************************
original formula: (E((AP1_equals_0>=3) U ((MTK1_equals_1>=3)||(ELK1_equals_1<=p70_equals_0))) * ((((!(Proliferation_equals_0>=1))&&(!(AKT_0>=1))) * EF((MEK1_2_equals_1<=TAOK_equals_0))) + (EF((SOS_equals_1>=2)) * (p70_equals_1<=MSK_equals_0))))
=> equivalent forward existential formula: ([(FwdU(((Init * E((AP1_equals_0>=3) U ((MTK1_equals_1>=3)||(ELK1_equals_1<=p70_equals_0)))) * ((!(Proliferation_equals_0>=1))&&(!(AKT_0>=1)))),TRUE) * (MEK1_2_equals_1<=TAOK_equals_0))] != FALSE + [(FwdU(((Init * E((AP1_equals_0>=3) U ((MTK1_equals_1>=3)||(ELK1_equals_1<=p70_equals_0)))) * (p70_equals_1<=MSK_equals_0)),TRUE) * (SOS_equals_1>=2))] != FALSE)
(forward)formula 14,0,0.508922,13436,1,0,185,34872,298,82,3519,37326,280
FORMULA MAPKbis-PT-5320-CTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
original formula: E(!(((MEK1_2_equals_1<=MDM2_equals_1)&&(MEK1_2_equals_0>=2))) U (TAK1_equals_1>=1))
=> equivalent forward existential formula: [(FwdU(Init,!(((MEK1_2_equals_1<=MDM2_equals_1)&&(MEK1_2_equals_0>=2)))) * (TAK1_equals_1>=1))] != FALSE
(forward)formula 15,0,0.509254,13436,1,0,185,34872,299,82,3519,37326,280
FORMULA MAPKbis-PT-5320-CTLCardinality-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !
***************************************
BK_STOP 1552887145807
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 77 ms
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Mar 18, 2019 5:32:23 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 37 ms
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5320
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5320
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: FGFR3_stimulus_equals_1,TGFBR_stimulus_equals_0,EGFR_stimulus_equals_1,DNA_damage_equals_1,TGFBR_stimulus_equals_1,DNA_damage_equals_0,EGFR_stimulus_equals_0,FGFR3_stimulus_equals_0,
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :FGFR3_stimulus_equals_1=0, TGFBR_stimulus_equals_0=1, EGFR_stimulus_equals_1=0, DNA_damage_equals_1=1, TGFBR_stimulus_equals_1=0, DNA_damage_equals_0=0, EGFR_stimulus_equals_0=1, FGFR3_stimulus_equals_0=1
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 15 expressions due to constant valuations.
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 4 false transitions.
Mar 18, 2019 5:32:23 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 185 ms
Mar 18, 2019 5:32:23 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 8 ms
Mar 18, 2019 5:32:23 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5320"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5320, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r096-smll-155246587500355"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5320.tgz
mv MAPKbis-PT-5320 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;