Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r096-smll-155246587500349.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
.....................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstools
Input is MAPKbis-PT-5310, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r096-smll-155246587500349
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 364K
-rw-r--r-- 1 mcc users 4.4K Feb 11 22:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 11 22:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.7K Feb 7 23:45 CTLFireability.txt
-rw-r--r-- 1 mcc users 22K Feb 7 23:45 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 102 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 340 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.8K Feb 5 00:14 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K Feb 5 00:14 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.5K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.5K Feb 4 06:27 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 21K Feb 4 06:27 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 5.8K Feb 1 00:01 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 1 00:01 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 5 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 166K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-00
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-01
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-02
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-03
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-04
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-05
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-06
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-07
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-08
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-09
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-10
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-11
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-12
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-13
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-14
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1552886984201

Working with output stream class java.io.PrintStream
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((false))
Formula 0 simplified : 1
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 95
// Phase 1: matrix 95 rows 98 cols
invariant :EGFR_equals_0 + EGFR_equals_1 = 1
invariant :GAB1_equals_0 + GAB1_equals_1 = 1
invariant :MYC_equals_0 + MYC_equals_1 = 1
invariant :MEK1_2_equals_0 + MEK1_2_equals_1 = 1
invariant :RSK_equals_0 + RSK_equals_1 = 1
invariant :FRS2_equals_0 + FRS2_equals_1 = 1
invariant :Growth_Arrest_equals_0 + Growth_Arrest_equals_1 = 1
invariant :JNK_equals_0 + JNK_equals_1 = 1
invariant :SPRY_equals_0 + SPRY_equals_1 = 1
invariant :p38_equals_0 + p38_equals_1 = 1
invariant :FGFR3_equals_0 + FGFR3_equals_1 = 1
invariant :MSK_equals_0 + MSK_equals_1 = 1
invariant :RAS_equals_0 + RAS_equals_1 = 1
invariant :MAP3K1_3_equals_0 + MAP3K1_3_equals_1 = 1
invariant :CREB_equals_0 + CREB_equals_1 = 1
invariant :p14_equals_0 + p14_equals_1 = 1
invariant :TGFBR_equals_0 + TGFBR_equals_1 = 1
invariant :PTEN_equals_0 + PTEN_equals_1 = 1
invariant :MTK1_equals_0 + MTK1_equals_1 = 1
invariant :PLCG_equals_0 + PLCG_equals_1 = 1
invariant :ELK1_equals_0 + ELK1_equals_1 = 1
invariant :PI3K_equals_0 + PI3K_equals_1 = 1
invariant :SMAD_equals_0 + SMAD_equals_1 = 1
invariant :RAF_equals_0 + RAF_equals_1 = 1
invariant :AKT_0 + AKT_equals_1 = 1
invariant :ATF2_equals_0 + ATF2_equals_1 = 1
invariant :TAK1_equals_0 + TAK1_equals_1 = 1
invariant :GADD45_equals_0 + GADD45_equals_1 = 1
invariant :GRB2_equals_0 + GRB2_equals_1 = 1
invariant :PPP2CA_equals_0 + PPP2CA_equals_1 = 1
invariant :FOXO3_equals_0 + FOXO3_equals_1 = 1
invariant :Apoptosis_equals_0 + Apoptosis_equals_1 = 1
invariant :DUSP1_equals_0 + DUSP1_equals_1 = 1
invariant :PKC_equals_0 + PKC_equals_1 = 1
invariant :FOS_equals_0 + FOS_equals_1 = 1
invariant :Proliferation_equals_0 + Proliferation_equals_1 = 1
invariant :JUN_equals_0 + JUN_equals_1 = 1
invariant :p53_equals_0 + p53_equals_1 = 1
invariant :p70_equals_0 + p70_equals_1 = 1
invariant :PDK1_equals_0 + PDK1_equals_1 = 1
invariant :p21_equals_0 + p21_equals_1 = 1
invariant :AP1_equals_0 + AP1_equals_1 = 1
invariant :SOS_equals_0 + SOS_equals_1 = 1
invariant :ATM_equals_0 + ATM_equals_1 = 1
invariant :ERK_equals_0 + ERK_equals_1 = 1
invariant :MAX_equals_0 + MAX_equals_1 = 1
invariant :TAOK_equals_0 + TAOK_equals_1 = 1
invariant :MDM2_equals_0 + MDM2_equals_1 = 1
invariant :BCL2_equals_0 + BCL2_equals_1 = 1
Reverse transition relation is NOT exact ! Due to transitions EGFR_equals_1_to_EGFR_equals_0_when_GRB2_equals_1, EGFR_equals_1_to_EGFR_equals_0_when_PKC_equals_1, ERK_equals_0_to_ERK_equals_1_when_MEK1_2_equals_1, GADD45_equals_0_to_GADD45_equals_1_when_p53_equals_1, MAP3K1_3_equals_1_to_MAP3K1_3_equals_0_when_RAS_equals_0, MEK1_2_equals_1_to_MEK1_2_equals_0_when_AP1_equals_1, MEK1_2_equals_1_to_MEK1_2_equals_0_when_PPP2CA_equals_1, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, PKC_equals_1_to_PKC_equals_0_when_PLCG_equals_0, PLCG_equals_0_to_PLCG_equals_1_when_EGFR_equals_1, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, RAS_equals_0_to_RAS_equals_1_when_PLCG_equals_1, RAS_equals_0_to_RAS_equals_1_when_SOS_equals_1, RSK_equals_1_to_RSK_equals_0_when_ERK_equals_0, SOS_equals_1_to_SOS_equals_0_when_GRB2_equals_0, SOS_equals_1_to_SOS_equals_0_when_RSK_equals_1, p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_MAP3K1_3_equals_1, p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_MTK1_equals_1, p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_MTK1_equals_1, p53_equals_1_to_p53_equals_0_when_ATM_equals_0_and_MDM2_equals_1, p53_equals_1_to_p53_equals_0_when_ATM_equals_0_and_p38_equals_0, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :36/111/21/168
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
148 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1.5631,41832,1,0,278,149032,323,133,3788,145369,316
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !(("((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))&&(TAK1_equals_1>=1))"))
Formula 1 simplified : !"((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))&&(TAK1_equals_1>=1))"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1.56724,42252,1,0,279,149470,326,133,3796,145469,323
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !((X(G(G(X(X("((FOS_equals_1>=1)&&(RSK_equals_0>=1))")))))))
Formula 2 simplified : !XGXX"((FOS_equals_1>=1)&&(RSK_equals_0>=1))"
6 unique states visited
6 strongly connected components in search stack
6 transitions explored
6 items max in DFS search stack
50 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.06937,54388,1,0,282,215847,332,133,3799,205365,339
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 3 : !(("((Apoptosis_equals_1>=1)&&(BCL2_equals_1>=1))"))
Formula 3 simplified : !"((Apoptosis_equals_1>=1)&&(BCL2_equals_1>=1))"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.07003,54388,1,0,282,215847,335,133,3802,205367,341
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 4 : !(("(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))"))
Formula 4 simplified : !"(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.07075,54652,1,0,282,215847,338,133,3804,205367,343
an accepting run exists (use option '-e' to print it)
Formula 4 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 5 : !((F(F((X("(ATM_equals_1>=1)"))U(X("((((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_1>=1))&&(TAOK_equals_1>=1))"))))))
Formula 5 simplified : !F(X"(ATM_equals_1>=1)" U X"((((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_1>=1))&&(TAOK_equals_1>=1))")
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Compilation finished in 2612 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 51 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>(<>((X((LTLAP4==true)))U(X((LTLAP5==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 344 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-05 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, (<>([]([]((LTLAP6==true)))))U(<>([]([]((LTLAP7==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 301 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-06 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>(X(<>(((LTLAP8==true))U((LTLAP9==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 145 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-07 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, (LTLAP10==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 185 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-08 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(<>((LTLAP11==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 327 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-09 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, ((<>((LTLAP12==true)))U(X((LTLAP13==true))))U(((LTLAP14==true))U(X((LTLAP15==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 547 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-10 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(((LTLAP16==true))U((LTLAP17==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 528 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-11 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, [](X(<>([](X((LTLAP18==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 708 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-12 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, -p, --pins-guards, --when, --ltl, []([](((LTLAP19==true))U(<>((LTLAP20==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 538 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-13 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, X(X(<>(<>(<>((LTLAP14==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 988 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-14 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, (X(((LTLAP21==true))U(false)))U((<>((LTLAP22==true)))U(X((LTLAP23==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 133 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-15 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1552887004494

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 18, 2019 5:29:47 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 18, 2019 5:29:47 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 18, 2019 5:29:47 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 135 ms
Mar 18, 2019 5:29:47 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Mar 18, 2019 5:29:48 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 56 ms
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5310
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5310
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: EGFR_stimulus_equals_0,TGFBR_stimulus_equals_1,TGFBR_stimulus_equals_0,FGFR3_stimulus_equals_1,DNA_damage_equals_0,DNA_damage_equals_1,EGFR_stimulus_equals_1,FGFR3_stimulus_equals_0,
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :EGFR_stimulus_equals_0=0, TGFBR_stimulus_equals_1=0, TGFBR_stimulus_equals_0=1, FGFR3_stimulus_equals_1=0, DNA_damage_equals_0=1, DNA_damage_equals_1=0, EGFR_stimulus_equals_1=1, FGFR3_stimulus_equals_0=1
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 13 expressions due to constant valuations.
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 5 false transitions.
Mar 18, 2019 5:29:48 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 203 ms
Mar 18, 2019 5:29:48 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 10 ms
Mar 18, 2019 5:29:48 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 2 ms
Mar 18, 2019 5:29:49 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 168 transitions.
Mar 18, 2019 5:29:49 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 49 place invariants in 43 ms
Mar 18, 2019 5:29:49 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 98 variables to be positive in 402 ms
Mar 18, 2019 5:29:49 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 168 transitions.
Mar 18, 2019 5:29:49 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/168 took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 18, 2019 5:29:49 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 32 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 18, 2019 5:29:50 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 168 transitions.
Mar 18, 2019 5:29:50 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 18 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 18, 2019 5:29:51 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 168 transitions.
Mar 18, 2019 5:29:53 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(42/168) took 1215 ms. Total solver calls (SAT/UNSAT): 779(375/404)
Mar 18, 2019 5:29:55 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 3826 ms. Total solver calls (SAT/UNSAT): 2205(900/1305)
Mar 18, 2019 5:29:55 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 168 transitions.
Mar 18, 2019 5:29:55 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 10 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Mar 18, 2019 5:29:55 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 6840ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5310"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5310, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r096-smll-155246587500349"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5310.tgz
mv MAPKbis-PT-5310 execution
cd execution
if [ "LTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "LTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;