Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r096-smll-155246587400256.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstools
Input is MAPK-PT-00020, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r096-smll-155246587400256
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 4.3K Feb 11 22:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 11 22:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 7 23:37 CTLFireability.txt
-rw-r--r-- 1 mcc users 13K Feb 7 23:37 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 100 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 338 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.3K Feb 5 00:12 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.9K Feb 5 00:12 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.9K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Feb 4 06:24 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 4 06:24 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Jan 31 23:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K Jan 31 23:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 25K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00020-CTLCardinality-00
FORMULA_NAME MAPK-PT-00020-CTLCardinality-01
FORMULA_NAME MAPK-PT-00020-CTLCardinality-02
FORMULA_NAME MAPK-PT-00020-CTLCardinality-03
FORMULA_NAME MAPK-PT-00020-CTLCardinality-04
FORMULA_NAME MAPK-PT-00020-CTLCardinality-05
FORMULA_NAME MAPK-PT-00020-CTLCardinality-06
FORMULA_NAME MAPK-PT-00020-CTLCardinality-07
FORMULA_NAME MAPK-PT-00020-CTLCardinality-08
FORMULA_NAME MAPK-PT-00020-CTLCardinality-09
FORMULA_NAME MAPK-PT-00020-CTLCardinality-10
FORMULA_NAME MAPK-PT-00020-CTLCardinality-11
FORMULA_NAME MAPK-PT-00020-CTLCardinality-12
FORMULA_NAME MAPK-PT-00020-CTLCardinality-13
FORMULA_NAME MAPK-PT-00020-CTLCardinality-14
FORMULA_NAME MAPK-PT-00020-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1552814762372

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.81258e+10,2.78114,68012,2,40643,5,394539,6,0,121,395362,0


Converting to forward existential form...Done !
original formula: (((!(((RasGTP>=1)&&(RasGTP<=MEKPP))) * AG((Raf>=2))) + AG(((ERK<=RasGTP)&&(RafP_Phase1>=1)))) + (ERKPP_Phase3>=1))
=> equivalent forward existential formula: [(FwdU(((Init * !((ERKPP_Phase3>=1))) * !((!(((RasGTP>=1)&&(RasGTP<=MEKPP))) * !(E(TRUE U !((Raf>=2))))))),TRUE) * !(((ERK<=RasGTP)&&(RafP_Phase1>=1))))] = FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 0,0,8.9807,146084,1,0,9,642511,22,3,859,699267,9
FORMULA MAPK-PT-00020-CTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(AG((((ERKPP_Phase3>=1)||(RasGTP>=1))||(!(MEKPP>=3)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((((ERKPP_Phase3>=1)||(RasGTP>=1))||(!(MEKPP>=3)))))] != FALSE
(forward)formula 1,1,9.13317,146612,1,0,12,651847,24,5,864,734698,10
FORMULA MAPK-PT-00020-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !((AG(((RafP<=Raf)||(ERK>=3))) * (((!(ERKPP_Phase3>=2))||((RafP_Phase1>=1)||(RasGTP<=MEKPP_Phase2))) + EF((RasGTP<=ERK)))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * !(((RafP<=Raf)||(ERK>=3))))] != FALSE + [((Init * !(((!(ERKPP_Phase3>=2))||((RafP_Phase1>=1)||(RasGTP<=MEKPP_Phase2))))) * !(E(TRUE U (RasGTP<=ERK))))] != FALSE)
(forward)formula 2,1,9.20525,146876,1,0,15,653861,26,7,911,748500,11
FORMULA MAPK-PT-00020-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG((EF((MEKP<=RafP_Phase1)) + AG((Phase1>=2))))
=> equivalent forward existential formula: [(FwdU((FwdU(Init,TRUE) * !(E(TRUE U (MEKP<=RafP_Phase1)))),TRUE) * !((Phase1>=2)))] = FALSE
(forward)formula 3,1,9.54258,159020,1,0,19,658832,29,8,934,752752,15
FORMULA MAPK-PT-00020-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (AG((((Phase3<=ERK)||(MEK_RafP<=MEK))||(MEKP_RafP<=Phase3))) + !(AF(((Raf_RasGTP<=ERKP_Phase3)&&(Raf_RasGTP<=MEKPP)))))
=> equivalent forward existential formula: [(FwdU((Init * !(!(!(EG(!(((Raf_RasGTP<=ERKP_Phase3)&&(Raf_RasGTP<=MEKPP)))))))),TRUE) * !((((Phase3<=ERK)||(MEK_RafP<=MEK))||(MEKP_RafP<=Phase3))))] = FALSE
(forward)formula 4,0,22.0615,363348,1,0,24,1.71541e+06,41,12,1056,2.21365e+06,20
FORMULA MAPK-PT-00020-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (EF((MEK<=ERK_MEKPP)) * EF(EG((ERK_MEKPP>=1))))
=> equivalent forward existential formula: [FwdG(FwdU((Init * E(TRUE U (MEK<=ERK_MEKPP))),TRUE),(ERK_MEKPP>=1))] != FALSE
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 5,1,31.9682,551100,1,0,26,2.72992e+06,50,12,1100,3.45896e+06,27
FORMULA MAPK-PT-00020-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (((((ERKP<=Raf_RasGTP)||(!(ERKP_MEKPP<=MEK)))||(!(Raf_RasGTP>=2))) * EX(((RasGTP<=Phase1)||(Phase2<=MEKP)))) * (AX(((ERKPP_Phase3<=Phase3)||(MEKP>=3))) * !(AG((ERK>=3)))))
=> equivalent forward existential formula: (([(Init * !((((ERKP<=Raf_RasGTP)||(!(ERKP_MEKPP<=MEK)))||(!(Raf_RasGTP>=2)))))] = FALSE * [(Init * !(EX(((RasGTP<=Phase1)||(Phase2<=MEKP)))))] = FALSE) * ([(EY(Init) * !(((ERKPP_Phase3<=Phase3)||(MEKP>=3))))] = FALSE * [(Init * !(E(TRUE U !((ERK>=3)))))] = FALSE))
(forward)formula 6,1,55.2768,989420,1,0,35,5.08825e+06,57,16,1194,5.91324e+06,35
FORMULA MAPK-PT-00020-CTLCardinality-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E(!(((RasGTP>=3)&&(Phase3<=MEK))) U ((!(Raf>=3))&&((RafP<=ERKPP)||(Phase1<=MEKP_Phase2))))
=> equivalent forward existential formula: [(FwdU(Init,!(((RasGTP>=3)&&(Phase3<=MEK)))) * ((!(Raf>=3))&&((RafP<=ERKPP)||(Phase1<=MEKP_Phase2))))] != FALSE
Hit Full ! (commute/partial/dont) 18/0/12
(forward)formula 7,1,83.0352,1354004,1,0,40,7.09231e+06,66,17,1308,8.45777e+06,39
FORMULA MAPK-PT-00020-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(A((MEK>=1) U (Raf>=1)))
=> equivalent forward existential formula: ([(FwdU(FwdU(Init,TRUE),!((Raf>=1))) * (!((MEK>=1)) * !((Raf>=1))))] = FALSE * [FwdG(FwdU(Init,TRUE),!((Raf>=1)))] = FALSE)
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 8,0,83.0505,1354268,1,0,41,7.09432e+06,74,17,1324,8.4603e+06,43
FORMULA MAPK-PT-00020-CTLCardinality-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E((((Phase1>=2)&&(MEKP_Phase2>=3))||(MEK_RafP<=Raf)) U AG((MEKP_Phase2<=MEK)))
=> equivalent forward existential formula: [(FwdU(Init,(((Phase1>=2)&&(MEKP_Phase2>=3))||(MEK_RafP<=Raf))) * !(E(TRUE U !((MEKP_Phase2<=MEK)))))] != FALSE
(forward)formula 9,0,91.6534,1521380,1,0,42,7.87097e+06,76,17,1347,9.56442e+06,46
FORMULA MAPK-PT-00020-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (AG(!(((Raf<=MEKP_Phase2)&&(MEKPP_Phase2<=ERK)))) + (!(((!(Phase2>=3))||((RasGTP<=ERK)||(MEKP>=2)))) * !(AX((Phase2>=3)))))
=> equivalent forward existential formula: [(FwdU((Init * !((!(((!(Phase2>=3))||((RasGTP<=ERK)||(MEKP>=2)))) * !(!(EX(!((Phase2>=3)))))))),TRUE) * ((Raf<=MEKP_Phase2)&&(MEKPP_Phase2<=ERK)))] = FALSE
(forward)formula 10,0,95.3893,1631732,1,0,49,7.96607e+06,81,21,1439,9.75057e+06,50
FORMULA MAPK-PT-00020-CTLCardinality-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG((((MEKP<=RasGTP)||((Phase3>=1)||(Raf_RasGTP<=MEKP_Phase2)))||((!(ERKPP_Phase3<=MEK_RafP))||(!(RasGTP>=2)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((((MEKP<=RasGTP)||((Phase3>=1)||(Raf_RasGTP<=MEKP_Phase2)))||((!(ERKPP_Phase3<=MEK_RafP))||(!(RasGTP>=2))))))] = FALSE
(forward)formula 11,0,97.6163,1652324,1,0,51,8.19668e+06,83,23,1494,1.01069e+07,51
FORMULA MAPK-PT-00020-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EF(((MEKP_RafP>=2)&&(ERKP_Phase3>=3))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U ((MEKP_RafP>=2)&&(ERKP_Phase3>=3)))))] = FALSE
(forward)formula 12,1,101.23,1706668,1,0,52,8.56164e+06,84,23,1496,1.04866e+07,54
FORMULA MAPK-PT-00020-CTLCardinality-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E(TRUE U (Phase2<=ERKP))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (Phase2<=ERKP))] != FALSE
(forward)formula 13,1,101.397,1712476,1,0,54,8.56695e+06,85,24,1518,1.04939e+07,55
FORMULA MAPK-PT-00020-CTLCardinality-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((((MEKP_Phase2>=1)&&(!(Phase1>=3))) * AG((RasGTP>=3))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * ((MEKP_Phase2>=1)&&(!(Phase1>=3)))) * !(E(TRUE U !((RasGTP>=3)))))] != FALSE
(forward)formula 14,0,101.403,1712740,1,0,55,8.56708e+06,87,24,1518,1.0494e+07,58
FORMULA MAPK-PT-00020-CTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EX(AG(((ERK_MEKPP<=MEKP)||(MEK>=2))))
=> equivalent forward existential formula: [(EY(Init) * !(E(TRUE U !(((ERK_MEKPP<=MEKP)||(MEK>=2))))))] != FALSE
(forward)formula 15,0,102.194,1722508,1,0,56,8.63039e+06,89,24,1541,1.05702e+07,61
FORMULA MAPK-PT-00020-CTLCardinality-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1552814868985

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 17, 2019 9:26:04 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 17, 2019 9:26:04 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 17, 2019 9:26:04 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 38 ms
Mar 17, 2019 9:26:04 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Mar 17, 2019 9:26:04 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Mar 17, 2019 9:26:04 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 8 ms
Mar 17, 2019 9:26:05 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 54 ms
Mar 17, 2019 9:26:05 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 2 ms
Mar 17, 2019 9:26:05 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00020"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstools"
echo " Input is MAPK-PT-00020, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r096-smll-155246587400256"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00020.tgz
mv MAPK-PT-00020 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;