Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r096-smll-155246587400248.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
....................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstools
Input is MAPK-PT-00008, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r096-smll-155246587400248
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 196K
-rw-r--r-- 1 mcc users 3.1K Feb 11 22:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K Feb 11 22:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 7 23:37 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K Feb 7 23:37 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 100 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 338 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.5K Feb 5 00:12 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K Feb 5 00:12 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.2K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K Feb 4 06:24 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 4 06:24 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.6K Jan 31 23:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Jan 31 23:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 25K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00008-CTLFireability-00
FORMULA_NAME MAPK-PT-00008-CTLFireability-01
FORMULA_NAME MAPK-PT-00008-CTLFireability-02
FORMULA_NAME MAPK-PT-00008-CTLFireability-03
FORMULA_NAME MAPK-PT-00008-CTLFireability-04
FORMULA_NAME MAPK-PT-00008-CTLFireability-05
FORMULA_NAME MAPK-PT-00008-CTLFireability-06
FORMULA_NAME MAPK-PT-00008-CTLFireability-07
FORMULA_NAME MAPK-PT-00008-CTLFireability-08
FORMULA_NAME MAPK-PT-00008-CTLFireability-09
FORMULA_NAME MAPK-PT-00008-CTLFireability-10
FORMULA_NAME MAPK-PT-00008-CTLFireability-11
FORMULA_NAME MAPK-PT-00008-CTLFireability-12
FORMULA_NAME MAPK-PT-00008-CTLFireability-13
FORMULA_NAME MAPK-PT-00008-CTLFireability-14
FORMULA_NAME MAPK-PT-00008-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1552814584051

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,6.11064e+06,0.147507,8668,2,2639,5,23385,6,0,121,23413,0


Converting to forward existential form...Done !
original formula: !(EF(EG(((MEKP_RafP>=1)&&(ERKPP_Phase3>=1)))))
=> equivalent forward existential formula: [FwdG(FwdU(Init,TRUE),((MEKP_RafP>=1)&&(ERKPP_Phase3>=1)))] = FALSE
Hit Full ! (commute/partial/dont) 24/6/6
(forward)formula 0,0,0.459256,14268,1,0,6,42011,19,0,677,46040,8
FORMULA MAPK-PT-00008-CTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(EG(AG(((ERK>=1)&&(MEKPP>=1)))))
=> equivalent forward existential formula: [FwdG(FwdU(Init,TRUE),!(E(TRUE U !(((ERK>=1)&&(MEKPP>=1))))))] != FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 1,0,0.480025,14796,1,0,7,43226,28,0,707,48212,11
FORMULA MAPK-PT-00008-CTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(AG((RafP_Phase1>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !((RafP_Phase1>=1)))))] != FALSE
(forward)formula 2,0,0.485577,14796,1,0,8,43370,30,0,708,48390,14
FORMULA MAPK-PT-00008-CTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF((EX((((Raf>=1)&&(RasGTP>=1))&&(MEKP_RafP>=1))) * (AF((ERK_MEKPP>=1)) * (MEKPP_Phase2>=1))))
=> equivalent forward existential formula: [(((FwdU(Init,TRUE) * EX((((Raf>=1)&&(RasGTP>=1))&&(MEKP_RafP>=1)))) * (MEKPP_Phase2>=1)) * !(EG(!((ERK_MEKPP>=1)))))] != FALSE
(forward)formula 3,1,0.51592,15324,1,0,15,45955,40,4,714,52804,19
FORMULA MAPK-PT-00008-CTLFireability-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((MEKP_Phase2>=1)&&(ERKP_MEKPP>=1))
=> equivalent forward existential formula: [(Init * ((MEKP_Phase2>=1)&&(ERKP_MEKPP>=1)))] != FALSE
(forward)formula 4,0,0.517258,15588,1,0,16,45973,41,4,715,52804,20
FORMULA MAPK-PT-00008-CTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (ERK_MEKPP>=1)
=> equivalent forward existential formula: [(Init * (ERK_MEKPP>=1))] != FALSE
(forward)formula 5,0,0.517911,15588,1,0,17,45980,41,4,715,52804,21
FORMULA MAPK-PT-00008-CTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (Raf_RasGTP>=1)
=> equivalent forward existential formula: [(Init * (Raf_RasGTP>=1))] != FALSE
(forward)formula 6,0,0.518381,15588,1,0,18,45980,42,4,715,52804,22
FORMULA MAPK-PT-00008-CTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((EG((MEK_RafP>=1)) * (MEK_RafP>=1)) + AF((EF((RafP_Phase1>=1)) * EG((MEKP_Phase2>=1)))))
=> equivalent forward existential formula: [FwdG((Init * !((EG((MEK_RafP>=1)) * (MEK_RafP>=1)))),!((E(TRUE U (RafP_Phase1>=1)) * EG((MEKP_Phase2>=1)))))] = FALSE
(forward)formula 7,0,3.32992,73416,1,0,164,336664,59,153,721,509042,177
FORMULA MAPK-PT-00008-CTLFireability-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((MEKP>=1)&&(RafP>=1))
=> equivalent forward existential formula: [(Init * ((MEKP>=1)&&(RafP>=1)))] != FALSE
(forward)formula 8,0,3.33107,73680,1,0,165,336673,60,153,722,509042,178
FORMULA MAPK-PT-00008-CTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (MEKPP_Phase2>=1)
=> equivalent forward existential formula: [(Init * (MEKPP_Phase2>=1))] != FALSE
(forward)formula 9,0,3.33178,73680,1,0,166,336674,60,153,722,509042,179
FORMULA MAPK-PT-00008-CTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(!((((((Phase1>=1)&&(RafP>=1))||((ERK>=1)&&(MEKPP>=1)))||(((ERK>=1)&&(MEKPP>=1))||((Raf>=1)&&(RasGTP>=1))))||(!(((Phase1>=1)&&(RafP>=1))&&(MEKP_RafP>=1))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((((((Phase1>=1)&&(RafP>=1))||((ERK>=1)&&(MEKPP>=1)))||(((ERK>=1)&&(MEKPP>=1))||((Raf>=1)&&(RasGTP>=1))))||(!(((Phase1>=1)&&(RafP>=1))&&(MEKP_RafP>=1))))))] != FALSE
(forward)formula 10,0,3.33662,73944,1,0,166,336729,62,153,736,509066,179
FORMULA MAPK-PT-00008-CTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (!(AG((MEKPP_Phase2>=1))) * (MEKPP_Phase2>=1))
=> equivalent forward existential formula: [(FwdU((Init * (MEKPP_Phase2>=1)),TRUE) * !((MEKPP_Phase2>=1)))] != FALSE
(forward)formula 11,0,3.34249,74208,1,0,168,337889,63,154,737,511648,179
FORMULA MAPK-PT-00008-CTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (E(((ERK_MEKPP>=1)&&(!((Phase2>=1)&&(MEKP>=1)))) U EG((ERKP_Phase3>=1))) * (E(((MEK_RafP>=1)&&(Raf_RasGTP>=1)) U (((ERKP>=1)&&(Phase3>=1))||((Phase1>=1)&&(RafP>=1)))) + (RafP_Phase1>=1)))
=> equivalent forward existential formula: ([(FwdU((Init * E(((ERK_MEKPP>=1)&&(!((Phase2>=1)&&(MEKP>=1)))) U EG((ERKP_Phase3>=1)))),((MEK_RafP>=1)&&(Raf_RasGTP>=1))) * (((ERKP>=1)&&(Phase3>=1))||((Phase1>=1)&&(RafP>=1))))] != FALSE + [((Init * E(((ERK_MEKPP>=1)&&(!((Phase2>=1)&&(MEKP>=1)))) U EG((ERKP_Phase3>=1)))) * (RafP_Phase1>=1))] != FALSE)
Hit Full ! (commute/partial/dont) 18/4/12
(forward)formula 12,0,3.56217,79488,1,0,174,365866,84,155,785,544206,186
FORMULA MAPK-PT-00008-CTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E((((!(RafP_Phase1>=1))&&((MEKP_RafP>=1)||(ERKP_Phase3>=1)))||(!((MEKP_RafP>=1)||((Phase2>=1)&&(MEKP>=1))))) U !((MEK_RafP>=1)))
=> equivalent forward existential formula: [(FwdU(Init,(((!(RafP_Phase1>=1))&&((MEKP_RafP>=1)||(ERKP_Phase3>=1)))||(!((MEKP_RafP>=1)||((Phase2>=1)&&(MEKP>=1)))))) * !((MEK_RafP>=1)))] != FALSE
Hit Full ! (commute/partial/dont) 14/0/16
(forward)formula 13,1,3.58123,79488,1,0,178,367779,92,156,824,546085,189
FORMULA MAPK-PT-00008-CTLFireability-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((EG(AX(((ERK>=1)&&(MEKPP>=1)))) + AF(((!((MEKP>=1)&&(RafP>=1)))&&((ERKP_Phase3>=1)&&(MEKP_RafP>=1))))) + (AG(AX((Raf_RasGTP>=1))) + (MEKP_Phase2>=1)))
=> equivalent forward existential formula: [(EY(FwdU(((Init * !((EG(!(EX(!(((ERK>=1)&&(MEKPP>=1)))))) + !(EG(!(((!((MEKP>=1)&&(RafP>=1)))&&((ERKP_Phase3>=1)&&(MEKP_RafP>=1))))))))) * !((MEKP_Phase2>=1))),TRUE)) * !((Raf_RasGTP>=1)))] = FALSE
Using saturation style SCC detection
(forward)formula 14,0,3.83108,85560,1,0,187,399166,108,163,883,587057,197
FORMULA MAPK-PT-00008-CTLFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (EF(AG(((RafP_Phase1>=1)||(ERKP_MEKPP>=1)))) + !(((!(((MEKPP_Phase2>=1)||((MEKPP>=1)&&(ERKP>=1)))&&((ERK>=1)&&(MEKPP>=1))))||(!(Raf_RasGTP>=1)))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * !(E(TRUE U !(((RafP_Phase1>=1)||(ERKP_MEKPP>=1))))))] != FALSE + [(Init * !(((!(((MEKPP_Phase2>=1)||((MEKPP>=1)&&(ERKP>=1)))&&((ERK>=1)&&(MEKPP>=1))))||(!(Raf_RasGTP>=1)))))] != FALSE)
(forward)formula 15,0,3.83938,86088,1,0,189,400333,112,163,894,587612,201
FORMULA MAPK-PT-00008-CTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************


BK_STOP 1552814592361

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 17, 2019 9:23:06 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 17, 2019 9:23:06 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 17, 2019 9:23:06 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 44 ms
Mar 17, 2019 9:23:06 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Mar 17, 2019 9:23:06 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Mar 17, 2019 9:23:06 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 9 ms
Mar 17, 2019 9:23:06 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 34 ms
Mar 17, 2019 9:23:06 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
Mar 17, 2019 9:23:06 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 3 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00008"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstools"
echo " Input is MAPK-PT-00008, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r096-smll-155246587400248"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00008.tgz
mv MAPK-PT-00008 execution
cd execution
if [ "CTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;