Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r096-smll-155246587400247.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstools
Input is MAPK-PT-00008, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r096-smll-155246587400247
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 196K
-rw-r--r-- 1 mcc users 3.1K Feb 11 22:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K Feb 11 22:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 7 23:37 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K Feb 7 23:37 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 100 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 338 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.5K Feb 5 00:12 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K Feb 5 00:12 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:36 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.2K Feb 4 22:36 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K Feb 4 06:24 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 4 06:24 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.6K Jan 31 23:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Jan 31 23:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Feb 4 22:21 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 4 22:21 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 0 Jan 29 09:34 model-fix.log
-rw-r--r-- 1 mcc users 25K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-00008-CTLCardinality-00
FORMULA_NAME MAPK-PT-00008-CTLCardinality-01
FORMULA_NAME MAPK-PT-00008-CTLCardinality-02
FORMULA_NAME MAPK-PT-00008-CTLCardinality-03
FORMULA_NAME MAPK-PT-00008-CTLCardinality-04
FORMULA_NAME MAPK-PT-00008-CTLCardinality-05
FORMULA_NAME MAPK-PT-00008-CTLCardinality-06
FORMULA_NAME MAPK-PT-00008-CTLCardinality-07
FORMULA_NAME MAPK-PT-00008-CTLCardinality-08
FORMULA_NAME MAPK-PT-00008-CTLCardinality-09
FORMULA_NAME MAPK-PT-00008-CTLCardinality-10
FORMULA_NAME MAPK-PT-00008-CTLCardinality-11
FORMULA_NAME MAPK-PT-00008-CTLCardinality-12
FORMULA_NAME MAPK-PT-00008-CTLCardinality-13
FORMULA_NAME MAPK-PT-00008-CTLCardinality-14
FORMULA_NAME MAPK-PT-00008-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1552814563603

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,6.11064e+06,0.141794,8648,2,2639,5,23385,6,0,121,23413,0


Converting to forward existential form...Done !
original formula: EF(AG(!((MEKPP_Phase2<=ERK_MEKPP))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !(!((MEKPP_Phase2<=ERK_MEKPP))))))] != FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 0,0,0.486496,16144,1,0,6,58538,14,0,634,58904,5
FORMULA MAPK-PT-00008-CTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF((ERKPP_Phase3>=3))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (ERKPP_Phase3>=3))] != FALSE
(forward)formula 1,1,0.491377,16408,1,0,8,59469,15,1,635,59855,6
FORMULA MAPK-PT-00008-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(EF((Phase2>=2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U (Phase2>=2))))] = FALSE
(forward)formula 2,1,0.539407,17856,1,0,9,66729,16,1,636,67863,9
FORMULA MAPK-PT-00008-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E(AX((MEK>=3)) U ((ERK_MEKPP>=3)&&(ERKP_Phase3<=MEKPP)))
=> equivalent forward existential formula: [(FwdU(Init,!(EX(!((MEK>=3))))) * ((ERK_MEKPP>=3)&&(ERKP_Phase3<=MEKPP)))] != FALSE
(forward)formula 3,0,0.56921,18644,1,0,57,72388,23,50,686,73094,84
FORMULA MAPK-PT-00008-CTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((EF((MEKPP_Phase2>=3)) * E((ERK>=1) U (ERK_MEKPP<=RafP))) * (AX((MEKPP<=MEKP_RafP)) + (MEK<=MEKPP_Phase2)))
=> equivalent forward existential formula: (([(Init * !(E(TRUE U (MEKPP_Phase2>=3))))] = FALSE * [(Init * !(E((ERK>=1) U (ERK_MEKPP<=RafP))))] = FALSE) * [(EY((Init * !((MEK<=MEKPP_Phase2)))) * !((MEKPP<=MEKP_RafP)))] = FALSE)
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 4,1,0.906936,26828,1,0,65,115967,36,54,749,125234,93
FORMULA MAPK-PT-00008-CTLCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((!((Raf_RasGTP>=2)) * EG(!((MEK>=2)))) + E(((ERK_MEKPP>=2)||(ERKP_MEKPP<=ERK_MEKPP)) U !((RafP<=Phase3))))
=> equivalent forward existential formula: ([FwdG((Init * !((Raf_RasGTP>=2))),!((MEK>=2)))] != FALSE + [(FwdU(Init,((ERK_MEKPP>=2)||(ERKP_MEKPP<=ERK_MEKPP))) * !((RafP<=Phase3)))] != FALSE)
Hit Full ! (commute/partial/dont) 24/0/6
(forward)formula 5,1,1.06172,30992,1,0,72,134184,57,57,821,149170,101
FORMULA MAPK-PT-00008-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E((((MEKPP>=3)&&(RafP_Phase1>=3))||(!(ERKPP>=1))) U (MEKPP_Phase2>=3))
=> equivalent forward existential formula: [(FwdU(Init,(((MEKPP>=3)&&(RafP_Phase1>=3))||(!(ERKPP>=1)))) * (MEKPP_Phase2>=3))] != FALSE
Hit Full ! (commute/partial/dont) 16/0/14
(forward)formula 6,1,1.70003,45244,1,0,76,199261,64,58,858,242173,104
FORMULA MAPK-PT-00008-CTLCardinality-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(AG((ERKP_MEKPP<=Phase2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((ERKP_MEKPP<=Phase2)))] != FALSE
(forward)formula 7,0,1.70418,45508,1,0,76,199261,66,58,867,242222,104
FORMULA MAPK-PT-00008-CTLCardinality-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EF((Raf<=RafP_Phase1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U (Raf<=RafP_Phase1))))] = FALSE
(forward)formula 8,1,1.72336,46300,1,0,77,200539,67,58,883,243389,107
FORMULA MAPK-PT-00008-CTLCardinality-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(E((RafP<=MEK) U (ERKPP_Phase3<=MEKP)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E((RafP<=MEK) U (ERKPP_Phase3<=MEKP))))] = FALSE
Hit Full ! (commute/partial/dont) 20/0/10
(forward)formula 9,0,1.89111,48940,1,0,81,215285,75,60,928,265880,111
FORMULA MAPK-PT-00008-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(AG((ERK>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((ERK>=1)))] != FALSE
(forward)formula 10,1,1.89331,49204,1,0,83,215575,76,62,929,266998,111
FORMULA MAPK-PT-00008-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(AF(!((Phase1<=ERKPP))))
=> equivalent forward existential formula: [FwdG(FwdU(Init,TRUE),!(!((Phase1<=ERKPP))))] = FALSE
Hit Full ! (commute/partial/dont) 24/0/6
(forward)formula 11,0,1.95826,51052,1,0,84,223100,83,62,973,281002,115
FORMULA MAPK-PT-00008-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E(((!(MEK_RafP<=Raf_RasGTP))||(!(MEKPP>=2))) U FALSE)
=> equivalent forward existential formula: [(FwdU(Init,((!(MEK_RafP<=Raf_RasGTP))||(!(MEKPP>=2)))) * FALSE)] != FALSE
(forward)formula 12,0,1.95833,51052,1,0,84,223100,83,62,973,281002,115
FORMULA MAPK-PT-00008-CTLCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(((MEKP_Phase2<=ERK_MEKPP) * (EF((ERKP_MEKPP>=3)) * AG((RafP<=Phase1)))))
=> equivalent forward existential formula: ([(Init * !((MEKP_Phase2<=ERK_MEKPP)))] != FALSE + ([(Init * !(E(TRUE U (ERKP_MEKPP>=3))))] != FALSE + [(FwdU(Init,TRUE) * !((RafP<=Phase1)))] != FALSE))
(forward)formula 13,1,2.05153,53956,1,0,89,234133,88,64,1003,290950,120
FORMULA MAPK-PT-00008-CTLCardinality-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (!(EX((MEKP_Phase2>=3))) + AG(!(((ERKPP_Phase3>=3)&&(ERKPP>=2)))))
=> equivalent forward existential formula: [(FwdU((Init * !(!(EX((MEKP_Phase2>=3))))),TRUE) * ((ERKPP_Phase3>=3)&&(ERKPP>=2)))] = FALSE
(forward)formula 14,1,2.07966,54484,1,0,93,238187,90,65,1006,295804,123
FORMULA MAPK-PT-00008-CTLCardinality-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(AF((MEKP>=2)))
=> equivalent forward existential formula: [FwdG(Init,!((MEKP>=2)))] != FALSE
Hit Full ! (commute/partial/dont) 24/0/6
(forward)formula 15,1,2.14012,56068,1,0,94,245874,98,66,1036,305125,127
FORMULA MAPK-PT-00008-CTLCardinality-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************


BK_STOP 1552814569584

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 17, 2019 9:22:45 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 17, 2019 9:22:45 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 17, 2019 9:22:45 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 38 ms
Mar 17, 2019 9:22:45 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Mar 17, 2019 9:22:46 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Mar 17, 2019 9:22:46 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 8 ms
Mar 17, 2019 9:22:46 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 49 ms
Mar 17, 2019 9:22:46 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 2 ms
Mar 17, 2019 9:22:46 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-00008"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstools"
echo " Input is MAPK-PT-00008, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r096-smll-155246587400247"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-00008.tgz
mv MAPK-PT-00008 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;