Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r085-csrt-155246554300328.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
............................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstools
Input is GPPP-PT-C0001N0000000100, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r085-csrt-155246554300328
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.4K Feb 11 01:29 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K Feb 11 01:29 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K Feb 7 00:10 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K Feb 7 00:10 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 111 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 349 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.5K Feb 4 23:51 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K Feb 4 23:51 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 4 22:35 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.7K Feb 4 22:35 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.7K Feb 3 08:44 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Feb 3 08:44 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.9K Jan 31 01:39 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K Jan 31 01:39 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:20 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:20 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 17 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 1 Mar 10 17:31 large_marking
-rw-r--r-- 1 mcc users 21K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-00
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-01
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-02
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-03
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-04
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-05
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-06
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-07
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-08
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-09
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-10
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-11
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-12
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-13
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-14
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1552779138011

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.45477e+08,23.1196,334156,2,22057,5,1.20338e+06,6,0,161,1.4256e+06,0


Converting to forward existential form...Done !
original formula: ((((S7P<=Lac)||(c1<=E4P))&&(!(c1>=2))) + !(EF(((E4P>=3)&&(_2PG<=ADP)))))
=> equivalent forward existential formula: [(FwdU((Init * !((((S7P<=Lac)||(c1<=E4P))&&(!(c1>=2))))),TRUE) * ((E4P>=3)&&(_2PG<=ADP)))] = FALSE
(forward)formula 0,1,23.1924,334156,1,0,5,1.20338e+06,8,0,203,1.4256e+06,0
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG((Lac<=FBP))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((Lac<=FBP)))] = FALSE
(forward)formula 1,0,23.2556,334156,1,0,7,1.20338e+06,10,2,224,1.4256e+06,1
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(!((NADplus<=S7P)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (NADplus<=S7P))] = FALSE
(forward)formula 2,1,23.2898,334156,1,0,7,1.20338e+06,11,2,241,1.4256e+06,1
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AF(!(EF((start>=1))))
=> equivalent forward existential formula: [FwdG(Init,!(!(E(TRUE U (start>=1)))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions Transketolase2, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/21/1/22
(forward)formula 3,0,47.5783,423848,1,0,45,1.48815e+06,71,30,1840,1.72235e+06,62
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (AF(!((DHAP<=_2PG))) + (!(EG((Lac<=NADPH))) + E((NADPplus>=3) U (Pyr>=3))))
=> equivalent forward existential formula: [FwdG(((Init * !(!(EG(!(!((DHAP<=_2PG))))))) * !(E((NADPplus>=3) U (Pyr>=3)))),(Lac<=NADPH))] = FALSE
(forward)formula 4,1,94.8663,1154492,1,0,1830,5.22336e+06,87,679,1887,5.78646e+06,3481
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (EF(((!(ATP>=2))&&((NADPplus<=Lac)&&(Lac>=3)))) + (AX((F6P>=1)) * (AF((NADH>=3)) * (a2<=_2PG))))
=> equivalent forward existential formula: ([(EY((Init * !(E(TRUE U ((!(ATP>=2))&&((NADPplus<=Lac)&&(Lac>=3))))))) * !((F6P>=1)))] = FALSE * ([FwdG((Init * !(E(TRUE U ((!(ATP>=2))&&((NADPplus<=Lac)&&(Lac>=3)))))),!((NADH>=3)))] = FALSE * [((Init * !(E(TRUE U ((!(ATP>=2))&&((NADPplus<=Lac)&&(Lac>=3)))))) * !((a2<=_2PG)))] = FALSE))
Hit Full ! (commute/partial/dont) 20/0/2
(forward)formula 5,0,100.059,1260088,1,0,1834,5.87099e+06,98,682,1927,6.4211e+06,3487
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF((!(((Lac<=b2)||(Xu5P>=3))) * EX((c2<=ADP))))
=> equivalent forward existential formula: [(EY((FwdU(Init,TRUE) * !(((Lac<=b2)||(Xu5P>=3))))) * (c2<=ADP))] != FALSE
(forward)formula 6,1,100.27,1270120,1,0,1838,5.87416e+06,101,685,1977,6.43019e+06,3490
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E(AF((DHAP<=GAP)) U EF((GSSG<=FBP)))
=> equivalent forward existential formula: [(FwdU(FwdU(Init,!(EG(!((DHAP<=GAP))))),TRUE) * (GSSG<=FBP))] != FALSE
(forward)formula 7,1,2019.83,4339380,1,0,3848,1.46757e+07,17,2484,1251,2.05011e+07,3729
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((ATP<=Lac))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (ATP<=Lac))] != FALSE
(forward)formula 8,0,2019.83,4339380,1,0,3848,1.46757e+07,18,2484,1268,2.05011e+07,3729
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(EF(((c1>=1)&&((F6P>=3)&&(Gluc>=3)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * ((c1>=1)&&((F6P>=3)&&(Gluc>=3))))] = FALSE
(forward)formula 9,1,2019.84,4339380,1,0,3848,1.46757e+07,19,2484,1273,2.05011e+07,3729
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((AG((_2PG>=1)) * AF((c1<=NADPH))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !(E(TRUE U !((_2PG>=1))))) * !(EG(!((c1<=NADPH)))))] != FALSE
(forward)formula 10,0,2021.77,4339380,1,0,3848,1.46757e+07,32,2488,1828,2.05011e+07,3745
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (E((R5P>=3) U ((a2<=NADplus)&&(a1<=Ru5P))) * E(((Pyr>=2)||(GAP<=DHAP)) U ((a2<=NADplus)||(b2>=3))))
=> equivalent forward existential formula: [(FwdU((Init * E((R5P>=3) U ((a2<=NADplus)&&(a1<=Ru5P)))),((Pyr>=2)||(GAP<=DHAP))) * ((a2<=NADplus)||(b2>=3)))] != FALSE
(forward)formula 11,0,2022.31,4339380,1,0,3848,1.46757e+07,44,2490,1877,2.05011e+07,3756
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(AX(AG((_3PG>=3))))
=> equivalent forward existential formula: [(FwdU(EY(Init),TRUE) * !((_3PG>=3)))] != FALSE
(forward)formula 12,1,2043.39,4339908,1,0,3848,1.4733e+07,46,2492,1879,2.05011e+07,3760
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((PEP<=ADP))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (PEP<=ADP))] != FALSE
(forward)formula 13,1,2043.47,4339908,1,0,3848,1.4733e+07,47,2492,1909,2.05011e+07,3761
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (_1_3_BPG>=2)
=> equivalent forward existential formula: [(Init * (_1_3_BPG>=2))] != FALSE
(forward)formula 14,0,2043.48,4339908,1,0,3848,1.4733e+07,48,2492,1910,2.05011e+07,3762
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !((((start>=3)||(((PEP<=b1)&&(_2PG<=ADP))&&(ADP>=2))) + AF(((NADPH<=FBP)||(Gluc>=3)))))
=> equivalent forward existential formula: [FwdG((Init * !(((start>=3)||(((PEP<=b1)&&(_2PG<=ADP))&&(ADP>=2))))),!(((NADPH<=FBP)||(Gluc>=3))))] != FALSE
(forward)formula 15,0,2043.57,4339908,1,0,3848,1.47342e+07,59,2493,2334,2.05011e+07,3764
FORMULA GPPP-PT-C0001N0000000100-CTLCardinality-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1552781185488

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 16, 2019 11:32:20 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 16, 2019 11:32:20 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 16, 2019 11:32:20 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 31 ms
Mar 16, 2019 11:32:20 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 33 places.
Mar 16, 2019 11:32:20 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 transitions.
Mar 16, 2019 11:32:20 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 14 ms
Mar 16, 2019 11:32:20 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 53 ms
Mar 16, 2019 11:32:20 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 2 ms
Mar 16, 2019 11:32:20 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000100"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstools"
echo " Input is GPPP-PT-C0001N0000000100, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r085-csrt-155246554300328"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000100.tgz
mv GPPP-PT-C0001N0000000100 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;