Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2019-input.r074-smll-155234739000104.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
.......................
=====================================================================
Generated by BenchKit 2-3957
Executing tool itstools
Input is EGFr-PT-10421, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r074-smll-155234739000104
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 876K
-rw-r--r-- 1 mcc users 4.0K Feb 10 23:18 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 10 23:18 CTLCardinality.xml
-rw-r--r-- 1 mcc users 8.1K Feb 6 20:46 CTLFireability.txt
-rw-r--r-- 1 mcc users 22K Feb 6 20:46 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 100 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 338 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.9K Feb 4 23:40 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K Feb 4 23:40 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:35 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.5K Feb 4 22:35 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K Feb 3 08:02 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Feb 3 08:02 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 9.5K Jan 31 00:53 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 25K Jan 31 00:53 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:20 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 4 22:20 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw------- 1 mcc users 672K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME EGFr-PT-10421-CTLFireability-00
FORMULA_NAME EGFr-PT-10421-CTLFireability-01
FORMULA_NAME EGFr-PT-10421-CTLFireability-02
FORMULA_NAME EGFr-PT-10421-CTLFireability-03
FORMULA_NAME EGFr-PT-10421-CTLFireability-04
FORMULA_NAME EGFr-PT-10421-CTLFireability-05
FORMULA_NAME EGFr-PT-10421-CTLFireability-06
FORMULA_NAME EGFr-PT-10421-CTLFireability-07
FORMULA_NAME EGFr-PT-10421-CTLFireability-08
FORMULA_NAME EGFr-PT-10421-CTLFireability-09
FORMULA_NAME EGFr-PT-10421-CTLFireability-10
FORMULA_NAME EGFr-PT-10421-CTLFireability-11
FORMULA_NAME EGFr-PT-10421-CTLFireability-12
FORMULA_NAME EGFr-PT-10421-CTLFireability-13
FORMULA_NAME EGFr-PT-10421-CTLFireability-14
FORMULA_NAME EGFr-PT-10421-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1552711897344

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,2.70216e+16,1.52448,45528,2,405,5,248526,6,0,766,201279,0


Converting to forward existential form...Done !
original formula: (!(FALSE) * AF((((grb2_equals_0>=1)&&(nck_equals_0>=1))&&(pak1_equals_1>=1))))
=> equivalent forward existential formula: ([(Init * FALSE)] = FALSE * [FwdG(Init,!((((grb2_equals_0>=1)&&(nck_equals_0>=1))&&(pak1_equals_1>=1))))] = FALSE)
Hit Full ! (commute/partial/dont) 180/0/23
(forward)formula 0,0,3.68812,82308,1,0,7,451300,20,2,3733,413277,8
FORMULA EGFr-PT-10421-CTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(FALSE)
=> equivalent forward existential formula: [(Init * !(FALSE))] != FALSE
(forward)formula 1,1,3.68821,82308,1,0,7,451300,20,2,3733,413277,8
FORMULA EGFr-PT-10421-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (FALSE * (FALSE + AF(((((((((((erbb11_equals_0>=1)&&(erbb12_equals_0>=1))&&(erbb13_equals_0>=1))&&(erbb14_equals_0>=1))&&(erbb23_equals_0>=1))&&(erbb24_equals_0>=1))&&(erbb34_equals_0>=1))&&(erbb44_equals_0>=1))&&(grb2_equals_1>=1))&&(shc_equals_0>=1)))))
=> equivalent forward existential formula: ([(Init * !(FALSE))] = FALSE * [FwdG((Init * !(FALSE)),!(((((((((((erbb11_equals_0>=1)&&(erbb12_equals_0>=1))&&(erbb13_equals_0>=1))&&(erbb14_equals_0>=1))&&(erbb23_equals_0>=1))&&(erbb24_equals_0>=1))&&(erbb34_equals_0>=1))&&(erbb44_equals_0>=1))&&(grb2_equals_1>=1))&&(shc_equals_0>=1))))] = FALSE)
Hit Full ! (commute/partial/dont) 155/0/48
(forward)formula 2,0,6.89154,155768,1,0,8,863525,28,3,3920,802990,12
FORMULA EGFr-PT-10421-CTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: A(TRUE U (AG(((erbb14_equals_1>=1)&&(grb2_equals_0>=1))) + ((mkk3_equals_0>=1)&&(mlk3_equals_1>=1))))
=> equivalent forward existential formula: [((Init * !(EG(!((!(E(TRUE U !(((erbb14_equals_1>=1)&&(grb2_equals_0>=1))))) + ((mkk3_equals_0>=1)&&(mlk3_equals_1>=1))))))) * !(E(!((!(E(TRUE U !(((erbb14_equals_1>=1)&&(grb2_equals_0>=1))))) + ((mkk3_equals_0>=1)&&(mlk3_equals_1>=1)))) U (!(TRUE) * !((!(E(TRUE U !(((erbb14_equals_1>=1)&&(grb2_equals_0>=1))))) + ((mkk3_equals_0>=1)&&(mlk3_equals_1>=1))))))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions erbb11_equals_0_to_erbb11_equals_1_when_erbb1_equals_1_and_hbegf_equals_1_and_shp1d_equals_0, erbb11_equals_1_to_erbb11_equals_0_when_shp1d_equals_1, shp1_equals_0_to_shp1_equals_1_when_erbb11_equals_1, shp1_equals_1_to_shp1_equals_0_when_erbb11_equals_0, shp1d_equals_0_to_shp1d_equals_1_when_shp1_equals_1, shp1d_equals_1_to_shp1d_equals_0_when_shp1_equals_0, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :65/133/6/204
Using saturation style SCC detection
sparsehash FATAL ERROR: failed to allocate 34 groups

BK_STOP 1552712768624

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 16, 2019 4:51:39 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 16, 2019 4:51:39 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 144 ms
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 208 places.
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 378 transitions.
Mar 16, 2019 4:51:40 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 54 ms
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 56 fixed domain variables (out of 208 variables) in GAL type EGFr_PT_10421
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 56 constant array cells/variables (out of 208 variables) in type EGFr_PT_10421
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: pp2b_equals_0,pp2a_equals_1,nrg2a_equals_1,mkp_equals_1,erbb4_equals_1,hbegf_equals_0,tgfa_equals_1,eps8r_equals_0,epr_equals_0,pdk1_equals_1,egf_equals_1,nrg1b_equals_1,ar_equals_1,nrg3_equals_0,nrg4_equals_0,btc_equals_0,mkp_equals_0,ship2_equals_0,bir_equals_0,erbb1_equals_0,eps8r_equals_1,mtorr_equals_0,pi3kr_equals_1,nrg1a_equals_0,erbb3_equals_0,nrg3_equals_1,nrg2b_equals_1,pp2a_equals_0,mtorr_equals_1,sos1r_equals_1,hbegf_equals_1,pi3kr_equals_0,ship2_equals_1,erbb1_equals_1,pdk1_equals_0,sos1r_equals_0,csrc_equals_0,pten_equals_1,pp2b_equals_1,csrc_equals_1,nrg2a_equals_0,pten_equals_0,nrg1b_equals_0,nrg4_equals_1,epr_equals_1,erbb2_equals_1,erbb4_equals_0,nrg2b_equals_0,btc_equals_1,ar_equals_0,erbb3_equals_1,bir_equals_1,erbb2_equals_0,tgfa_equals_0,egf_equals_0,nrg1a_equals_1,
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 56 constant variables :pp2b_equals_0=1, pp2a_equals_1=0, nrg2a_equals_1=1, mkp_equals_1=0, erbb4_equals_1=1, hbegf_equals_0=0, tgfa_equals_1=1, eps8r_equals_0=1, epr_equals_0=0, pdk1_equals_1=1, egf_equals_1=1, nrg1b_equals_1=1, ar_equals_1=1, nrg3_equals_0=0, nrg4_equals_0=0, btc_equals_0=0, mkp_equals_0=1, ship2_equals_0=1, bir_equals_0=0, erbb1_equals_0=0, eps8r_equals_1=0, mtorr_equals_0=1, pi3kr_equals_1=1, nrg1a_equals_0=0, erbb3_equals_0=0, nrg3_equals_1=1, nrg2b_equals_1=1, pp2a_equals_0=1, mtorr_equals_1=0, sos1r_equals_1=0, hbegf_equals_1=1, pi3kr_equals_0=0, ship2_equals_1=0, erbb1_equals_1=1, pdk1_equals_0=0, sos1r_equals_0=1, csrc_equals_0=1, pten_equals_1=0, pp2b_equals_1=0, csrc_equals_1=0, nrg2a_equals_0=0, pten_equals_0=1, nrg1b_equals_0=0, nrg4_equals_1=1, epr_equals_1=1, erbb2_equals_1=1, erbb4_equals_0=0, nrg2b_equals_0=0, btc_equals_1=1, ar_equals_0=0, erbb3_equals_1=1, bir_equals_1=1, erbb2_equals_0=0, tgfa_equals_0=0, egf_equals_0=0, nrg1a_equals_1=1
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 1068 expressions due to constant valuations.
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 174 false transitions.
Mar 16, 2019 4:51:40 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 308 ms
Mar 16, 2019 4:51:40 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 5 ms
Mar 16, 2019 4:51:40 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="EGFr-PT-10421"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3957"
echo " Executing tool itstools"
echo " Input is EGFr-PT-10421, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r074-smll-155234739000104"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/EGFr-PT-10421.tgz
mv EGFr-PT-10421 execution
cd execution
if [ "CTLFireability" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLFireability" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;