Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2019-input.r063-ebro-155234659200231.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
.....................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstools
Input is Diffusion2D-PT-D50N010, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r063-ebro-155234659200231
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 3.5K Feb 10 21:36 CTLCardinality.txt
-rw-r--r-- 1 mcc users 16K Feb 10 21:36 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.3K Feb 6 17:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K Feb 6 17:58 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 109 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 347 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.6K Feb 4 23:32 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K Feb 4 23:32 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Feb 4 22:34 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K Feb 4 22:34 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K Feb 3 07:22 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K Feb 3 07:22 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.1K Jan 30 23:46 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K Jan 30 23:46 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:19 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 4 22:19 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 8 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 7.3M Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-00
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-01
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-02
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-03
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-04
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-05
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-06
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-07
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-08
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-09
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-10
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-11
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-12
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-13
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-14
FORMULA_NAME Diffusion2D-PT-D50N010-LTLCardinality-15

=== Now, execution of the tool begins

BK_START 1552807984632

Working with output stream class java.io.PrintStream
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !(((X("(cAMP__30_29_>=3)"))U("(cAMP__30_19_>=1)")))
Formula 0 simplified : !(X"(cAMP__30_29_>=3)" U "(cAMP__30_19_>=1)")
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
108697 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1089.38,6280708,1,0,7,3.42867e+07,16,0,96312,2.64993e+06,9
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA Diffusion2D-PT-D50N010-LTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !(("(cAMP__23_7_>=3)"))
Formula 1 simplified : !"(cAMP__23_7_>=3)"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
9891 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1188.29,6280708,1,0,7,3.42867e+07,20,0,103810,2.64993e+06,17
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA Diffusion2D-PT-D50N010-LTLCardinality-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !((X(X("(cAMP__29_3_<=cAMP__8_26_)"))))
Formula 2 simplified : !XX"(cAMP__29_3_<=cAMP__8_26_)"
3 unique states visited
0 strongly connected components in search stack
2 transitions explored
3 items max in DFS search stack
10 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1188.4,6280708,1,0,7,3.42867e+07,23,0,103814,2.64993e+06,22
no accepting run found
Formula 2 is TRUE no accepting run found.
FORMULA Diffusion2D-PT-D50N010-LTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 3 : !(((G("(cAMP__48_18_>=2)"))U(G(F("(cAMP__25_10_>=2)")))))
Formula 3 simplified : !(G"(cAMP__48_18_>=2)" U GF"(cAMP__25_10_>=2)")
3 unique states visited
3 strongly connected components in search stack
4 transitions explored
3 items max in DFS search stack
3350 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1221.91,6281424,1,0,9,3.42867e+07,32,0,103816,4.71408e+06,35
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA Diffusion2D-PT-D50N010-LTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 4 : !((X(X("(cAMP__7_7_<=cAMP__4_40_)"))))
Formula 4 simplified : !XX"(cAMP__7_7_<=cAMP__4_40_)"
3 unique states visited
0 strongly connected components in search stack
2 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1221.91,6281424,1,0,9,3.42867e+07,35,0,103820,4.71408e+06,37
no accepting run found
Formula 4 is TRUE no accepting run found.
FORMULA Diffusion2D-PT-D50N010-LTLCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 5 : !((F(G(("(cAMP__50_38_>=3)")U("(cAMP__48_29_<=cAMP__29_13_)")))))
Formula 5 simplified : !FG("(cAMP__50_38_>=3)" U "(cAMP__48_29_<=cAMP__29_13_)")

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 17, 2019 7:33:07 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 17, 2019 7:33:07 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 17, 2019 7:33:08 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 779 ms
Mar 17, 2019 7:33:08 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2500 places.
Mar 17, 2019 7:33:09 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 19404 transitions.
Mar 17, 2019 7:33:12 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2773 ms
Mar 17, 2019 7:33:12 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 296 ms
Mar 17, 2019 7:33:12 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 2 ms
Mar 17, 2019 7:33:14 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 19404 transitions.
Mar 17, 2019 7:33:14 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (19404) to apply POR reductions. Disabling POR matrices.
Mar 17, 2019 7:33:16 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 3512ms conformant to PINS in folder :/home/mcc/execution
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:78)
at java.lang.Thread.run(Thread.java:748)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N010"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D50N010, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r063-ebro-155234659200231"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N010.tgz
mv Diffusion2D-PT-D50N010 execution
cd execution
if [ "LTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "LTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;