Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2019-input.r063-ebro-155234659200222.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
.....................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstools
Input is Diffusion2D-PT-D40N150, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r063-ebro-155234659200222
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 4.8M
-rw-r--r-- 1 mcc users 4.3K Feb 10 21:36 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K Feb 10 21:36 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Feb 6 17:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K Feb 6 17:58 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 109 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 347 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 3.0K Feb 4 23:32 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K Feb 4 23:32 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 4 22:34 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.6K Feb 4 22:34 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Feb 3 07:22 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Feb 3 07:22 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.0K Jan 30 23:46 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K Jan 30 23:46 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:19 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 4 22:19 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 8 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 4.7M Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-00
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-01
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-02
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-03
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-04
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-05
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-06
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-07
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-08
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-09
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-10
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-11
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-12
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-13
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-14
FORMULA_NAME Diffusion2D-PT-D40N150-LTLCardinality-15

=== Now, execution of the tool begins

BK_START 1552805084321

Working with output stream class java.io.PrintStream
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((X(G(("(cAMP__15_31_<=cAMP__15_7_)")U("(cAMP__10_37_<=cAMP__4_37_)")))))
Formula 0 simplified : !XG("(cAMP__15_31_<=cAMP__15_7_)" U "(cAMP__10_37_<=cAMP__4_37_)")
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_STOP 1552808311303

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 17, 2019 6:44:47 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 17, 2019 6:44:47 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 17, 2019 6:44:48 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 591 ms
Mar 17, 2019 6:44:48 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1600 places.
Mar 17, 2019 6:44:48 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 12324 transitions.
Mar 17, 2019 6:44:50 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1935 ms
Mar 17, 2019 6:44:51 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 263 ms
Mar 17, 2019 6:44:51 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 2 ms
Mar 17, 2019 6:44:52 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 12324 transitions.
Mar 17, 2019 6:44:52 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (12324) to apply POR reductions. Disabling POR matrices.
Mar 17, 2019 6:44:53 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 2416ms conformant to PINS in folder :/home/mcc/execution
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:78)
at java.lang.Thread.run(Thread.java:748)
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D40N150"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D40N150, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r063-ebro-155234659200222"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D40N150.tgz
mv Diffusion2D-PT-D40N150 execution
cd execution
if [ "LTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "LTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;