Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2019-input.r063-ebro-155234659100195.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2019-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
........................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstools
Input is Diffusion2D-PT-D40N010, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r063-ebro-155234659100195
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 4.8M
-rw-r--r-- 1 mcc users 4.6K Feb 10 21:35 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 10 21:35 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.7K Feb 6 17:57 CTLFireability.txt
-rw-r--r-- 1 mcc users 22K Feb 6 17:57 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 109 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 347 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.9K Feb 4 23:32 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K Feb 4 23:32 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 4 22:34 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.2K Feb 4 22:34 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Feb 3 07:22 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Feb 3 07:22 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.3K Jan 30 23:46 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K Jan 30 23:46 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:19 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 4 22:19 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 8 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 4.7M Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-00
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-01
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-02
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-03
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-04
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-05
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-06
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-07
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-08
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-09
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-10
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-11
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-12
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-13
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-14
FORMULA_NAME Diffusion2D-PT-D40N010-LTLCardinality-15

=== Now, execution of the tool begins

BK_START 1552796188387

Working with output stream class java.io.PrintStream
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((G(F(("(cAMP__35_2_<=cAMP__11_37_)")U("(cAMP__9_26_<=cAMP__40_1_)")))))
Formula 0 simplified : !GF("(cAMP__35_2_<=cAMP__11_37_)" U "(cAMP__9_26_<=cAMP__40_1_)")
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
3 unique states visited
3 strongly connected components in search stack
4 transitions explored
3 items max in DFS search stack
43486 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,436.225,2545248,1,0,7,1.45241e+07,20,0,61470,3.90101e+06,18
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA Diffusion2D-PT-D40N010-LTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !(((G(G("(cAMP__5_22_>=2)")))U(F(X("(cAMP__11_27_<=cAMP__32_20_)")))))
Formula 1 simplified : !(G"(cAMP__5_22_>=2)" U FX"(cAMP__11_27_<=cAMP__32_20_)")
2 unique states visited
0 strongly connected components in search stack
1 transitions explored
2 items max in DFS search stack
4519 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,481.416,2545516,1,0,8,1.45241e+07,30,0,66269,4.08466e+06,26
no accepting run found
Formula 1 is TRUE no accepting run found.
FORMULA Diffusion2D-PT-D40N010-LTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !((F((F("(cAMP__27_20_<=cAMP__11_14_)"))U(X("(cAMP__34_15_>=3)")))))
Formula 2 simplified : !F(F"(cAMP__27_20_<=cAMP__11_14_)" U X"(cAMP__34_15_>=3)")

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 17, 2019 4:16:31 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 17, 2019 4:16:31 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 17, 2019 4:16:32 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 591 ms
Mar 17, 2019 4:16:32 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1600 places.
Mar 17, 2019 4:16:32 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 12324 transitions.
Mar 17, 2019 4:16:34 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1897 ms
Mar 17, 2019 4:16:34 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 228 ms
Mar 17, 2019 4:16:34 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 2 ms
Mar 17, 2019 4:16:36 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 12324 transitions.
Mar 17, 2019 4:16:36 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (12324) to apply POR reductions. Disabling POR matrices.
Mar 17, 2019 4:16:36 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 2014ms conformant to PINS in folder :/home/mcc/execution
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:78)
at java.lang.Thread.run(Thread.java:748)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D40N010"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D40N010, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r063-ebro-155234659100195"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D40N010.tgz
mv Diffusion2D-PT-D40N010 execution
cd execution
if [ "LTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "LTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;