Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r019-csrt-155225079800004.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.....................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstools
Input is Angiogenesis-PT-01, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-csrt-155225079800004
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 200K
-rw-r--r-- 1 mcc users 3.7K Feb 9 06:49 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K Feb 9 06:49 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Feb 5 03:33 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 5 03:33 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Mar 10 17:31 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 105 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 343 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.4K Feb 4 22:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.9K Feb 4 22:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:32 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.8K Feb 4 22:32 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.7K Feb 2 00:14 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K Feb 2 00:14 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Jan 29 11:28 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Jan 29 11:28 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:18 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:18 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 3 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 33K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1552420378054

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,110,0.019439,4692,2,284,5,1209,6,0,220,974,0


Converting to forward existential form...Done !
original formula: (AG(((!(KdStarGStarPgStarP3P2>=3))||(Pip3>=3))) * E(!((Enz>=2)) U !((KdStarGStarPg<=AktStar))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * !(((!(KdStarGStarPgStarP3P2>=3))||(Pip3>=3))))] = FALSE * [(Init * !(E(!((Enz>=2)) U !((KdStarGStarPg<=AktStar)))))] = FALSE)
Reverse transition relation is NOT exact ! Due to transitions k2, k55, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :14/48/2/64
(forward)formula 0,1,0.067096,7268,1,0,59,11055,140,38,1379,4941,128
FORMULA Angiogenesis-PT-01-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(((KdStarGStarPgStarP3<=GP3)&&(KdStarGStarPgStarP3P2<=GStarPgP3)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * ((KdStarGStarPgStarP3<=GP3)&&(KdStarGStarPgStarP3P2<=GStarPgP3)))] != FALSE
(forward)formula 1,1,0.068186,7796,1,0,61,11063,141,39,1389,4981,129
FORMULA Angiogenesis-PT-01-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((EF(!((GP3<=KdStarPg))) * (Akt>=3)) * ((KdStarGStarP3k<=Pg)||(!((!(KdStarPgStarP2>=3))||((P3k>=1)&&(KdStarPg<=GStarP3))))))
=> equivalent forward existential formula: [(FwdU(((Init * ((KdStarGStarP3k<=Pg)||(!((!(KdStarPgStarP2>=3))||((P3k>=1)&&(KdStarPg<=GStarP3)))))) * (Akt>=3)),TRUE) * !((GP3<=KdStarPg)))] != FALSE
(forward)formula 2,0,0.068471,7796,1,0,61,11064,143,39,1396,4986,129
FORMULA Angiogenesis-PT-01-CTLCardinality-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((AktStar<=KdStarPg) + (EF((Akt<=KdStarG)) + (AG((KdStarGStarP3k>=1)) * AF((AktP3>=3)))))
=> equivalent forward existential formula: ([(FwdU(((Init * !((AktStar<=KdStarPg))) * !(E(TRUE U (Akt<=KdStarG)))),TRUE) * !((KdStarGStarP3k>=1)))] = FALSE * [FwdG(((Init * !((AktStar<=KdStarPg))) * !(E(TRUE U (Akt<=KdStarG)))),!((AktP3>=3)))] = FALSE)
(forward)formula 3,1,0.093103,8324,1,0,69,16598,153,44,1427,7576,142
FORMULA Angiogenesis-PT-01-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(((Pten<=GStarPgP3)||(((KdStarGStarP3k<=Enz)&&(Pip3>=1))&&(KdStarGStarP3kP3>=1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((Pten<=GStarPgP3)||(((KdStarGStarP3k<=Enz)&&(Pip3>=1))&&(KdStarGStarP3kP3>=1)))))] = FALSE
(forward)formula 4,0,0.09452,8324,1,0,71,16674,155,46,1445,7849,143
FORMULA Angiogenesis-PT-01-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: A((PtP3P2>=3) U (((KdStarGStarPgP3<=Gab1)&&(P3k<=Enz))||((KdStarGStarPg>=1)&&(PtP3<=PtP2))))
=> equivalent forward existential formula: [((Init * !(EG(!((((KdStarGStarPgP3<=Gab1)&&(P3k<=Enz))||((KdStarGStarPg>=1)&&(PtP3<=PtP2))))))) * !(E(!((((KdStarGStarPgP3<=Gab1)&&(P3k<=Enz))||((KdStarGStarPg>=1)&&(PtP3<=PtP2)))) U (!((PtP3P2>=3)) * !((((KdStarGStarPgP3<=Gab1)&&(P3k<=Enz))||((KdStarGStarPg>=1)&&(PtP3<=PtP2))))))))] != FALSE
(forward)formula 5,1,0.099841,8324,1,0,79,17117,165,54,1485,8171,159
FORMULA Angiogenesis-PT-01-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (KdStarGStarP3>=3)
=> equivalent forward existential formula: [(Init * (KdStarGStarP3>=3))] != FALSE
(forward)formula 6,0,0.100026,8324,1,0,79,17117,166,54,1486,8171,159
FORMULA Angiogenesis-PT-01-CTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: A((Pten>=1) U ((!(KdStarG>=1))&&(!(KdStarGStarP3kStarP3P2>=2))))
=> equivalent forward existential formula: [((Init * !(EG(!(((!(KdStarG>=1))&&(!(KdStarGStarP3kStarP3P2>=2))))))) * !(E(!(((!(KdStarG>=1))&&(!(KdStarGStarP3kStarP3P2>=2)))) U (!((Pten>=1)) * !(((!(KdStarG>=1))&&(!(KdStarGStarP3kStarP3P2>=2))))))))] != FALSE
(forward)formula 7,1,0.104325,8588,1,0,89,17798,176,61,1494,8426,187
FORMULA Angiogenesis-PT-01-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EG((Enz<=PtP3))
=> equivalent forward existential formula: [FwdG(Init,(Enz<=PtP3))] != FALSE
(forward)formula 8,0,0.10474,8588,1,0,90,17808,182,62,1499,8442,188
FORMULA Angiogenesis-PT-01-CTLCardinality-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((KdStarGStarPgStar>=1)||(GStarP3kP3>=2)) + (EF(((Enz>=1)&&(GStarP3kP3>=3))) * EG(((AktStar<=Akt)&&(KdStarGStarP3k<=GStarP3kP3)))))
=> equivalent forward existential formula: ([(Init * ((KdStarGStarPgStar>=1)||(GStarP3kP3>=2)))] != FALSE + [FwdG((Init * E(TRUE U ((Enz>=1)&&(GStarP3kP3>=3)))),((AktStar<=Akt)&&(KdStarGStarP3k<=GStarP3kP3)))] != FALSE)
(forward)formula 9,0,0.106067,8588,1,0,91,17891,190,62,1512,8457,191
FORMULA Angiogenesis-PT-01-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarGStarP3kStar<=KdStarPgStar)
=> equivalent forward existential formula: [(Init * (KdStarGStarP3kStar<=KdStarPgStar))] != FALSE
(forward)formula 10,1,0.106355,8588,1,0,91,17891,191,62,1515,8459,192
FORMULA Angiogenesis-PT-01-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(!((KdStarGStarP3k>=2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((KdStarGStarP3k>=2)))] != FALSE
(forward)formula 11,1,0.106739,8588,1,0,91,17891,193,62,1517,8459,193
FORMULA Angiogenesis-PT-01-CTLCardinality-11 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AF(!(((KdStarGStarPgStarP2<=Akt)&&((Enz<=Pten)&&(KdStarGStarP3<=KdStar)))))
=> equivalent forward existential formula: [FwdG(Init,!(!(((KdStarGStarPgStarP2<=Akt)&&((Enz<=Pten)&&(KdStarGStarP3<=KdStar))))))] = FALSE
Hit Full ! (commute/partial/dont) 32/32/32
(forward)formula 12,0,0.114037,8588,1,0,93,18927,200,64,1593,9668,197
FORMULA Angiogenesis-PT-01-CTLCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (AF(((!(Enz<=KdStarGStarPgP3))||(KdStarGStarP3kStar>=2))) + AF(!(((KdStarGStarP3k<=KdStarGStarPgStar)||(Gab1>=1)))))
=> equivalent forward existential formula: [FwdG((Init * !(!(EG(!(((!(Enz<=KdStarGStarPgP3))||(KdStarGStarP3kStar>=2))))))),!(!(((KdStarGStarP3k<=KdStarGStarPgStar)||(Gab1>=1)))))] = FALSE
(forward)formula 13,1,0.117182,8852,1,0,97,19347,212,68,1609,9840,212
FORMULA Angiogenesis-PT-01-CTLCardinality-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (KdStarGStarPgP3<=KdStarGStarPgStarP3)
=> equivalent forward existential formula: [(Init * (KdStarGStarPgP3<=KdStarGStarPgStarP3))] != FALSE
(forward)formula 14,1,0.117459,9116,1,0,98,19351,213,68,1611,9842,213
FORMULA Angiogenesis-PT-01-CTLCardinality-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (KdStarGStarP3kStarP3>=1)
=> equivalent forward existential formula: [(Init * (KdStarGStarP3kStarP3>=1))] != FALSE
(forward)formula 15,0,0.117779,9116,1,0,99,19352,214,68,1611,9842,214
FORMULA Angiogenesis-PT-01-CTLCardinality-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************


BK_STOP 1552420381109

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 50 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Mar 12, 2019 7:53:00 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 10 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 52 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 4 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-csrt-155225079800004"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
if [ "CTLCardinality" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "CTLCardinality" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;