Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2019-input.r019-csrt-155225079700002.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2019-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
..................
=====================================================================
Generated by BenchKit 2-3954
Executing tool itstools
Input is Angiogenesis-PT-01, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-csrt-155225079700002
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.7K Feb 9 06:49 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K Feb 9 06:49 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Feb 5 03:33 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 5 03:33 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Mar 10 17:31 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 105 Feb 24 15:05 GlobalProperties.txt
-rw-r--r-- 1 mcc users 343 Feb 24 15:05 GlobalProperties.xml
-rw-r--r-- 1 mcc users 2.4K Feb 4 22:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.9K Feb 4 22:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K Feb 4 22:32 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.8K Feb 4 22:32 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.7K Feb 2 00:14 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K Feb 2 00:14 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Jan 29 11:28 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Jan 29 11:28 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 4 22:18 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 4 22:18 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 equiv_col
-rw-r--r-- 1 mcc users 3 Jan 29 09:34 instance
-rw-r--r-- 1 mcc users 6 Jan 29 09:34 iscolored
-rw-r--r-- 1 mcc users 33K Mar 10 17:31 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-00
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-01
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-02
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-03
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-04
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-05
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-06
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-07
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-08
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-09
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-10
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-11
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-12
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-13
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-14
FORMULA_NAME Angiogenesis-PT-01-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1552420378641

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201903111103/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-00 with value :KdStarGStarP3kStarP3
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-01 with value :AktStar
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-02 with value :Akt
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-03 with value :AktP3
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-04 with value :KdStarG
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-05 with value :Pten
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-06 with value :PtP2
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-07 with value :KdStarGStarPgP3
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-08 with value :Akt
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-09 with value :KdStarGStarPgStarP3
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-10 with value :KdStar
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-11 with value :GStarP3
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-12 with value :KdStar
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-13 with value :KdStarGStarPg
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-14 with value :KdStarGStarPgStarP3P2
Read [bounds] property : Angiogenesis-PT-01-UpperBounds-15 with value :Gab1
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis\_PT\_01\_flat,110,0.021221,4084,2,284,5,1209,6,0,220,974,0
Total reachable state count : 110

Verifying 16 reachability properties.
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-00 :0 <= KdStarGStarP3kStarP3 <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-00 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-00,0,0.021814,4116,1,0,7,1209,9,1,341,974,4
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-01 :0 <= AktStar <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-01 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-01,0,0.022219,4184,1,0,8,1209,10,1,406,974,5
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-02 :0 <= Akt <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-02 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-02,0,0.022693,4184,1,0,9,1209,11,1,475,974,6
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-03 :0 <= AktP3 <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-03 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-03,0,0.023101,4184,1,0,10,1209,12,1,542,974,7
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-04 :0 <= KdStarG <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-04 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-04,0,0.023309,4184,1,0,11,1209,13,1,571,974,8
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-05 :0 <= Pten <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-05 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-05,0,0.023721,4184,1,0,12,1209,14,1,634,974,9
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-06 :0 <= PtP2 <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-06 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-06,0,0.024172,4184,1,0,13,1209,15,1,705,974,10
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-07 :0 <= KdStarGStarPgP3 <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-07 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-07,0,0.024353,4184,1,0,14,1209,16,1,726,974,11
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-08 :0 <= Akt <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-08 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-08,0,0.024432,4184,1,0,14,1209,16,1,726,974,11
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-09 :0 <= KdStarGStarPgStarP3 <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-09 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-09,0,0.024832,4184,1,0,15,1209,17,1,781,974,12
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-10 :0 <= KdStar <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-10 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-10,0,0.025042,4184,1,0,16,1209,18,1,804,974,13
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-11 :0 <= GStarP3 <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-11 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-11,0,0.025321,4184,1,0,17,1209,19,1,823,974,14
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-12 :0 <= KdStar <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-12 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-12,0,0.025403,4184,1,0,17,1209,19,1,823,974,14
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-13 :0 <= KdStarGStarPg <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-13 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-13,0,0.025527,4184,1,0,18,1209,20,1,834,974,15
Min sum of variable value : 0
Maximum sum along a path : 0
Bounds property Angiogenesis-PT-01-UpperBounds-14 :0 <= KdStarGStarPgStarP3P2 <= 0
FORMULA Angiogenesis-PT-01-UpperBounds-14 0 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-14,0,0.025805,4184,1,0,18,1209,21,1,884,974,16
Min sum of variable value : 0
Maximum sum along a path : 1
Bounds property Angiogenesis-PT-01-UpperBounds-15 :0 <= Gab1 <= 1
FORMULA Angiogenesis-PT-01-UpperBounds-15 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-UpperBounds-15,0,0.026158,4184,1,0,19,1209,22,1,929,974,17

BK_STOP 1552420381313

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 66 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Mar 12, 2019 7:53:00 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 12 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 64 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 2 ms
Mar 12, 2019 7:53:00 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3954"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-csrt-155225079700002"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
if [ "UpperBounds" = "GlobalProperties" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
if [ "UpperBounds" = "UpperBounds" ] ; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;