Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............................................................
/home/mcc/execution
total 360K
-rw-r--r-- 1 mcc users 4.2K May 30 21:42 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 30 21:42 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.4K May 29 15:41 CTLFireability.txt
-rw-r--r-- 1 mcc users 21K May 29 15:41 CTLFireability.xml
-rw-r--r-- 1 mcc users 2.8K May 28 09:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 28 09:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.3K May 28 08:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.9K May 28 08:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 4.5K May 28 06:35 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 21K May 28 06:35 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 106 May 26 06:29 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 344 May 26 06:29 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 8.0K May 27 04:04 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 24K May 27 04:04 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 28 07:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 28 07:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 5 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw-r--r-- 1 mcc users 166K May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is MAPKbis-PT-5310, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r285-csrt-152749176000295
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-00
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-01
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-02
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-03
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-04
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-05
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-06
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-07
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-08
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-09
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-10
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-11
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-12
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-13
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-14
FORMULA_NAME MAPKbis-PT-5310-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1527991490827

FORMULA MAPKbis-PT-5310-ReachabilityCardinality-15 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityCardinality.pnml.gal, -t, CGAL, -reachable-file, ReachabilityCardinality.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityCardinality.pnml.gal -t CGAL -reachable-file ReachabilityCardinality.prop --nowitness
Loading property file ReachabilityCardinality.prop.
Read [reachable] property : MAPKbis-PT-5310-ReachabilityCardinality-00 with value :(((ATM_equals_0>=1)&&(p70_equals_0>=3))&&(!(p21_equals_1<=0)))
Read [invariant] property : MAPKbis-PT-5310-ReachabilityCardinality-01 with value :(ATM_equals_1<=RAF_equals_1)
Read [reachable] property : MAPKbis-PT-5310-ReachabilityCardinality-02 with value :(!((!(MEK1_2_equals_1<=0))||(!(Proliferation_equals_1>=1))))
Read [reachable] property : MAPKbis-PT-5310-ReachabilityCardinality-03 with value :((ELK1_equals_0<=0)&&((JUN_equals_1>=2)&&(!(PLCG_equals_0>=2))))
Read [invariant] property : MAPKbis-PT-5310-ReachabilityCardinality-04 with value :(((!(TAK1_equals_0>=2))||(Apoptosis_equals_0>=3))||(Apoptosis_equals_1<=Growth_Arrest_equals_1))
Read [invariant] property : MAPKbis-PT-5310-ReachabilityCardinality-05 with value :(((!(SMAD_equals_1>=3))||(MSK_equals_1<=Growth_Arrest_equals_0))||((!(Proliferation_equals_1>=2))||(!(PPP2CA_equals_1<=MAP3K1_3_equals_1))))
Read [reachable] property : MAPKbis-PT-5310-ReachabilityCardinality-06 with value :((((Growth_Arrest_equals_1>=3)||(PPP2CA_equals_1>=2))&&(!(EGFR_equals_0<=AP1_equals_1)))||(!((p70_equals_1>=1)||(BCL2_equals_1<=CREB_equals_1))))
Read [reachable] property : MAPKbis-PT-5310-ReachabilityCardinality-07 with value :(MYC_equals_1>=2)
Read [invariant] property : MAPKbis-PT-5310-ReachabilityCardinality-08 with value :((((Growth_Arrest_equals_1<=PPP2CA_equals_1)||(Proliferation_equals_0>=1))&&((GRB2_equals_0>=3)&&(RAS_equals_0<=p70_equals_0)))||(((p53_equals_1<=AP1_equals_1)&&(ELK1_equals_0<=MYC_equals_1))||(FOS_equals_1<=TAK1_equals_1)))
Read [invariant] property : MAPKbis-PT-5310-ReachabilityCardinality-09 with value :(!(((EGFR_equals_1>=2)||(p14_equals_1>=1))&&(MAP3K1_3_equals_0>=3)))
Read [reachable] property : MAPKbis-PT-5310-ReachabilityCardinality-11 with value :((!((TAOK_equals_1<=0)&&(AP1_equals_1>=1)))&&(((PKC_equals_0>=3)&&(p53_equals_1<=PDK1_equals_0))||((EGFR_equals_0<=FOXO3_equals_0)&&(TAK1_equals_1>=2))))
Read [invariant] property : MAPKbis-PT-5310-ReachabilityCardinality-12 with value :((!((PPP2CA_equals_1>=3)&&(PLCG_equals_1<=PPP2CA_equals_0)))||((!(BCL2_equals_0<=FOXO3_equals_1))||(p21_equals_0>=1)))
Read [invariant] property : MAPKbis-PT-5310-ReachabilityCardinality-13 with value :(p14_equals_0>=1)
Read [reachable] property : MAPKbis-PT-5310-ReachabilityCardinality-14 with value :(SMAD_equals_0>=2)
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 95
// Phase 1: matrix 95 rows 98 cols
invariant :EGFR_equals_0 + EGFR_equals_1 = 1
invariant :GAB1_equals_0 + GAB1_equals_1 = 1
invariant :MYC_equals_0 + MYC_equals_1 = 1
invariant :MEK1_2_equals_0 + MEK1_2_equals_1 = 1
invariant :RSK_equals_0 + RSK_equals_1 = 1
invariant :FRS2_equals_0 + FRS2_equals_1 = 1
invariant :Growth_Arrest_equals_0 + Growth_Arrest_equals_1 = 1
invariant :JNK_equals_0 + JNK_equals_1 = 1
invariant :SPRY_equals_0 + SPRY_equals_1 = 1
invariant :p38_equals_0 + p38_equals_1 = 1
invariant :FGFR3_equals_0 + FGFR3_equals_1 = 1
invariant :MSK_equals_0 + MSK_equals_1 = 1
invariant :RAS_equals_0 + RAS_equals_1 = 1
invariant :MAP3K1_3_equals_0 + MAP3K1_3_equals_1 = 1
invariant :CREB_equals_0 + CREB_equals_1 = 1
invariant :p14_equals_0 + p14_equals_1 = 1
invariant :TGFBR_equals_0 + TGFBR_equals_1 = 1
invariant :PTEN_equals_0 + PTEN_equals_1 = 1
invariant :MTK1_equals_0 + MTK1_equals_1 = 1
invariant :PLCG_equals_0 + PLCG_equals_1 = 1
invariant :ELK1_equals_0 + ELK1_equals_1 = 1
invariant :PI3K_equals_0 + PI3K_equals_1 = 1
invariant :SMAD_equals_0 + SMAD_equals_1 = 1
invariant :RAF_equals_0 + RAF_equals_1 = 1
invariant :AKT_0 + AKT_equals_1 = 1
invariant :ATF2_equals_0 + ATF2_equals_1 = 1
invariant :TAK1_equals_0 + TAK1_equals_1 = 1
invariant :GADD45_equals_0 + GADD45_equals_1 = 1
invariant :GRB2_equals_0 + GRB2_equals_1 = 1
invariant :PPP2CA_equals_0 + PPP2CA_equals_1 = 1
invariant :FOXO3_equals_0 + FOXO3_equals_1 = 1
invariant :Apoptosis_equals_0 + Apoptosis_equals_1 = 1
invariant :DUSP1_equals_0 + DUSP1_equals_1 = 1
invariant :PKC_equals_0 + PKC_equals_1 = 1
invariant :FOS_equals_0 + FOS_equals_1 = 1
invariant :Proliferation_equals_0 + Proliferation_equals_1 = 1
invariant :JUN_equals_0 + JUN_equals_1 = 1
invariant :p53_equals_0 + p53_equals_1 = 1
invariant :p70_equals_0 + p70_equals_1 = 1
invariant :PDK1_equals_0 + PDK1_equals_1 = 1
invariant :p21_equals_0 + p21_equals_1 = 1
invariant :AP1_equals_0 + AP1_equals_1 = 1
invariant :SOS_equals_0 + SOS_equals_1 = 1
invariant :ATM_equals_0 + ATM_equals_1 = 1
invariant :ERK_equals_0 + ERK_equals_1 = 1
invariant :MAX_equals_0 + MAX_equals_1 = 1
invariant :TAOK_equals_0 + TAOK_equals_1 = 1
invariant :MDM2_equals_0 + MDM2_equals_1 = 1
invariant :BCL2_equals_0 + BCL2_equals_1 = 1
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis\_PT\_5310\_flat\_flat,3.84641e+12,0.592258,20900,2,323,5,97038,6,0,554,87942,0
Total reachable state count : 3846411649024

Verifying 14 reachability properties.
Reachability property MAPKbis-PT-5310-ReachabilityCardinality-00 does not hold.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : MAPKbis-PT-5310-ReachabilityCardinality-00

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-00,0,0.592983,21064,1,0,5,97038,7,0,558,87942,0
Invariant property MAPKbis-PT-5310-ReachabilityCardinality-01 is true.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-01,0,0.593287,21096,1,0,5,97038,8,0,561,87942,0
Reachability property MAPKbis-PT-5310-ReachabilityCardinality-02 is true.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-02,2.40518e+11,0.593983,21160,2,199,6,97038,9,0,565,87942,0
Reachability property MAPKbis-PT-5310-ReachabilityCardinality-03 does not hold.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : MAPKbis-PT-5310-ReachabilityCardinality-03

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-03,0,0.594483,21160,1,0,6,97038,10,0,569,87942,0
Invariant property MAPKbis-PT-5310-ReachabilityCardinality-04 is true.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-04,0,0.595082,21160,1,0,6,97038,11,0,579,87942,0
Invariant property MAPKbis-PT-5310-ReachabilityCardinality-05 is true.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-05,0,0.595524,21160,1,0,6,97038,12,0,584,87942,0
Reachability property MAPKbis-PT-5310-ReachabilityCardinality-06 is true.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-06,903168,0.596331,21160,2,185,7,97038,13,0,597,87942,0
Reachability property MAPKbis-PT-5310-ReachabilityCardinality-07 does not hold.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : MAPKbis-PT-5310-ReachabilityCardinality-07

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-07,0,0.596511,21160,1,0,7,97038,14,0,598,87942,0
Invariant property MAPKbis-PT-5310-ReachabilityCardinality-08 does not hold.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-08,1.44507e+07,0.59773,21160,2,241,8,97038,15,0,622,87942,0
Invariant property MAPKbis-PT-5310-ReachabilityCardinality-09 is true.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-09,0,0.598085,21160,1,0,8,97038,16,0,627,87942,0
Reachability property MAPKbis-PT-5310-ReachabilityCardinality-11 does not hold.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : MAPKbis-PT-5310-ReachabilityCardinality-11

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-11,0,0.599115,21160,1,0,8,97038,17,0,637,87942,0
Invariant property MAPKbis-PT-5310-ReachabilityCardinality-12 is true.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-12,0,0.599613,21160,1,0,8,97038,18,0,642,87942,0
Invariant property MAPKbis-PT-5310-ReachabilityCardinality-13 does not hold.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-13,2.40401e+11,0.599889,21160,2,316,9,97038,19,0,644,87942,0
Reachability property MAPKbis-PT-5310-ReachabilityCardinality-14 does not hold.
FORMULA MAPKbis-PT-5310-ReachabilityCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : MAPKbis-PT-5310-ReachabilityCardinality-14

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
MAPKbis-PT-5310-ReachabilityCardinality-14,0,0.60007,21160,1,0,9,97038,20,0,645,87942,0
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1527991494227

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 03, 2018 2:04:52 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
Jun 03, 2018 2:04:52 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 03, 2018 2:04:52 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 67 ms
Jun 03, 2018 2:04:52 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Jun 03, 2018 2:04:52 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Jun 03, 2018 2:04:53 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 18 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5310
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5310
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: DNA_damage_equals_0,TGFBR_stimulus_equals_1,DNA_damage_equals_1,FGFR3_stimulus_equals_0,TGFBR_stimulus_equals_0,EGFR_stimulus_equals_0,FGFR3_stimulus_equals_1,EGFR_stimulus_equals_1,
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :DNA_damage_equals_0=1, TGFBR_stimulus_equals_1=0, DNA_damage_equals_1=0, FGFR3_stimulus_equals_0=1, TGFBR_stimulus_equals_0=1, EGFR_stimulus_equals_0=0, FGFR3_stimulus_equals_1=0, EGFR_stimulus_equals_1=1
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 16 expressions due to constant valuations.
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 5 false transitions.
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 99 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 45 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityCardinality.pnml.gal : 5 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/ReachabilityCardinality.prop : 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 68 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 168 transitions.
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 168 transitions.
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 49 place invariants in 20 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd checkProperties
INFO: Ran tautology test, simplified 0 / 14 in 474 ms.
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-00(UNSAT) depth K=0 took 17 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-01(UNSAT) depth K=0 took 16 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-02(UNSAT) depth K=0 took 10 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 168 transitions.
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-03(UNSAT) depth K=0 took 38 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-04(UNSAT) depth K=0 took 0 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-05(UNSAT) depth K=0 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-06(UNSAT) depth K=0 took 0 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-07(UNSAT) depth K=0 took 0 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-08(UNSAT) depth K=0 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-09(UNSAT) depth K=0 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-11(UNSAT) depth K=0 took 0 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-12(UNSAT) depth K=0 took 0 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-13(UNSAT) depth K=0 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-14(UNSAT) depth K=0 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-00(UNSAT) depth K=1 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-01(UNSAT) depth K=1 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-02(UNSAT) depth K=1 took 1 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-03(UNSAT) depth K=1 took 0 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-04(UNSAT) depth K=1 took 13 ms
Jun 03, 2018 2:04:53 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-05(UNSAT) depth K=1 took 11 ms
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd checkProperties
WARNING: Interrupting SMT solver.
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property MAPKbis-PT-5310-ReachabilityCardinality-06(UNSAT) depth K=1 took 10 ms
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver checkSat
WARNING: SMT solver unexpectedly returned 'unknown' answer, retrying.
java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:297)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:305)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verifyAssertion(NextBMCSolver.java:452)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verify(NextBMCSolver.java:435)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runBMC(Gal2SMTFrontEnd.java:378)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.access$0(Gal2SMTFrontEnd.java:350)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd$1.run(Gal2SMTFrontEnd.java:159)
at java.lang.Thread.run(Thread.java:748)
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
WARNING: Unexpected error occurred while running SMT. Was verifying MAPKbis-PT-5310-ReachabilityCardinality-07 SMT depth 1
java.lang.RuntimeException: java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runBMC(Gal2SMTFrontEnd.java:404)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.access$0(Gal2SMTFrontEnd.java:350)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd$1.run(Gal2SMTFrontEnd.java:159)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:297)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:305)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verifyAssertion(NextBMCSolver.java:452)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verify(NextBMCSolver.java:435)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runBMC(Gal2SMTFrontEnd.java:378)
... 3 more
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: During BMC, SMT solver timed out at depth 1
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solving timed out (3600000 secs) at depth 1
Jun 03, 2018 2:04:54 AM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (define-fun trsrc160 ((src (Array Int Int))(dst (Array Int Int))) Bool (and (_enabledsrc__160 src) (= (store (store src 95 (+ (select src 95) 1)) 94 (- (select src 94) 1)) dst))) with error (error "Error writing to Z3 solver: java.io.IOException: Stream closed")
Exception in thread "Thread-8" java.lang.RuntimeException: Error when declaring system variables to SMT solver.(error "Error writing to Z3 solver: java.io.IOException: Stream closed")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.init(NextBMCSolver.java:93)
at fr.lip6.move.gal.gal2smt.bmc.KInductionSolver.init(KInductionSolver.java:59)
at fr.lip6.move.gal.gal2smt.smt.ISMTSolver.init(ISMTSolver.java:17)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runKInduction(Gal2SMTFrontEnd.java:278)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.access$1(Gal2SMTFrontEnd.java:274)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd$2.run(Gal2SMTFrontEnd.java:166)
at java.lang.Thread.run(Thread.java:748)
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.application.SMTRunner$2 run
INFO: SMT solved 0/ 14 properties. Interrupting other analysis methods.
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver checkSat
WARNING: SMT solver unexpectedly returned 'unknown' answer, retrying.
Skipping mayMatrices nes/nds SMT solver raised an exception or timeout :(error "Failed to check-sat")
java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:297)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:305)
at fr.lip6.move.gal.gal2smt.bmc.KInductionSolver.init(KInductionSolver.java:116)
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.init(NecessaryEnablingsolver.java:71)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:471)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
Jun 03, 2018 2:04:54 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 602ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5310"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5310.tgz
mv MAPKbis-PT-5310 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is MAPKbis-PT-5310, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r285-csrt-152749176000295"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;